Array 1 56799-57011 **** Predicted by CRISPRDetect 2.4 *** >NZ_QICT01000012.1 Gilliamella apicola strain DSM 104097 Ga0215725_112, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 56799 29 96.6 33 ............T................ ATACCTATGGTGGTGAATGGGAAGAAAAAAAAC 56861 29 100.0 32 ............................. CGCAAAACAAGATTTGCAGGATGGATTAAAAA 56922 29 100.0 32 ............................. CTCTGGAATGTTGGTTCATCAAATTCTTTGAG 56983 29 93.1 0 ............T........A....... | ========== ====== ====== ====== ============================= ================================= ================== 4 29 97.4 33 ATGTTCCCTGTACACACAGGGGTAAACCG # Left flank : GATATATGGTGGAGTTTATAACCTGTTTGACAAAGATGTCTCAAATGCTGACTTCGGTAAAACTTTAGAAGGTCGACGTTACTTCATAGGTACCGAGATTAACTTCTAAATTAACTAATAAGTATTTTCCTATAAAAAAGATGACTGTTCAAACAGCCATCTTTTTCTATTTATACTAATATAGATTATTTATAATCCAAAAATAGAAATACCTTTTTTCACCCATCGATAAAATAACTTAATGCAATGTCAACATAGTAACTTTTTGCTATTTAATAAAATCTAATTATATATTTCAAGGTATTATTATTATTAATCTAGTGAAAAATAACAATTTATTGGTAGAATCCTATGAATATTAATTTTAACTACCGTTAATTTAAATTAACTCAATAAAAACATAGTGTTATAAATACTAATTTTATTACAAATTAACCCAAAAAATCGGTAGAAATTTGACAGCCAATATTTTAATTATAAAACAGTATGTTATAATTGGT # Right flank : GTTCTATAAAGCTGGTTAGTCAGACTAAGAACAAAGAATTGACTAAAATAATTCACGAAATGGATTACATCCCATGGATAGCGGTATCAACTCCAAGAGATGTTTATGCTCATGAGACGGGACACGCATTACATTAGCTACACCAGGAAGAAATTGATAATATCATTAAGAAATTGTGAGGACGAGGTTGGGCACATGCAATTAGTAATTATGCTCTACATAACAAACGAGAATTTGTTGCTGAAGCGTTTTCGTTGTATATTGAAAATCGCAGAGAAGCTAAAAAGCGACTTTCTCCAGAATTATTTAAACTTTTCGAATCACTAGATAAGGACATTAAATGAATAAGTTTGATTTATTAGTTGAGCAAGCAACTGAACTGATTAACACCGAGCCACTTCCTGATGATGCAGAGGAGCAATTGCAACAAATTATCGACCAAGCTGACGACAAAACGGAAAGACACATGTTAGGGAGACTTGCTGAAGCTCTGTTTGTTA # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCTGTACACACAGGGGTAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCTATACACATAGGGATAAACCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.10,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 4740-4343 **** Predicted by CRISPRDetect 2.4 *** >NZ_QICT01000013.1 Gilliamella apicola strain DSM 104097 Ga0215725_113, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4739 29 93.1 33 ..A..........G............... ATGTCGCGTTACCTAAAACCCAAATCATCACTA 4677 29 100.0 33 ............................. TTCAAAATTGATCAGTGCATTTATGTTATCTAC 4615 29 100.0 32 ............................. GTTATTTGGGCATCTTAGCAGAATTCGTATTA 4554 29 100.0 32 ............................. CTCGAACAACTCGAAAAACAGCATCAAATTAA 4493 29 100.0 32 ............................. GGCGTACGCCTTGTCGCCCTTAGTCAATTTCT 4432 29 100.0 32 ............................. GCTGTTCGAGCTGGTGCGGTAGTTTTTCGTGA 4371 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 7 29 99.0 32 ATGTTCCCTGTATACACAGGGATAAACCG # Left flank : CAGTATAAATATCAATAAATAATTTATTTATCTTAAATCTATTGTTATAAACAAAATACCATGTTGAGCTAACATAAACATTTACTTTTAAAATTGAGTAATAGATTACAAATAACAGCGCTTATAAAATTATTTTCATTCAAAAAATATATTGGATTACTCAAAATTACAGAAATGCACTTACAAAAAACGAGTACTTGAGATTAATTTGTGAAAATTTTATAACCAAGCTACATAAACAAGCAACTTAAAAAGTAGAGTCATTTTGATAACAACAAAGCACTAATAACATCTCAATAAAACTTACCATTTTTTAACTAAATGAGAAATCAGAACTTATCGGTAGAATTCCGTAGAATCTAATTTTAATTTCCATCAATTTTAATTAATTTAATAAAAACATAACGTTATAAATACTGGTTTTAATAAAAAATAGCCTAAAAAATCGGTAGAAATTTAGCAGTCAATATTTTAATTATAAAACAGTATGTTATAATAGG # Right flank : AGATAGGAGTTTTTTATGCTGTATTTTGTTAGATTTTTTACGTTAGTATTTATTTATTCTTCTTGTTTTGTAATTCCAGCTCAAAATATTGTAAATGCTGGATTAATCATAATTTTTGATGTGACCATTTATTATCTTGTTTTTTTTAAATATACAAAAGCAGTTGTTAAAAGTTTTAATAAAATAGGGGTAGAAACTTTTAAAAGTAACTATAAAAAAAGCAATTTATATATATCAAGAAATTATGCTAGTGCAATATATTTTGATGACGTTGAAAGAAAAATCCACTTTTTAAATCCAAGAAGATGTGTTTCTAAATTTTGTTATTCAGATTTAGTAGAGGCTGAATTTGAAAAAAATACATTAATTCTATATTTTACTGGAGAAAAAAGGCTGAGTGCACCATTCTATTATAAAAAAGAGGATTTTGGTCATTTACATTCAATGATAGGGGTTATATTTGATAGAGGCTGAATTTAATAAAAATACATTATTTCTAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCTGTATACACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: R [matched GTGTTCCCTATACACATAGGGATAAACCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 8073-7434 **** Predicted by CRISPRDetect 2.4 *** >NZ_QICT01000013.1 Gilliamella apicola strain DSM 104097 Ga0215725_113, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8072 29 100.0 32 ............................. GGCGTTGCATATAAAACTCCTATTTATTAAAA 8011 29 100.0 32 ............................. GTAAATAACATGCGACAAAAACTATTTAATTC 7950 29 100.0 32 ............................. CCACCTCGTTTTACGTCAATAAAGTTTTGCAT 7889 29 100.0 32 ............................. GGAATAATGAAAATGACAAATATTATCGAAAT 7828 29 100.0 32 ............................. TCTCAGATAAATGTTCTATTGGAGAAGAAAAG 7767 29 100.0 32 ............................. TTATCGCACAGCGCTACCGCTAGCACTTTCAC 7706 29 100.0 32 ............................. ATTTGGAATAAAAGGATGAAAAAATGGATACC 7645 29 100.0 32 ............................. TCCTGATACCTATATCCGTCAGGATTGGTTGA 7584 29 100.0 32 ............................. CGGATTCTCATATTGGTGAAATGTATTTAGAT 7523 29 100.0 32 ............................. GGGTCGTTTTGCTGTATCTATTATATTATGCT 7462 29 79.3 0 .............A...CT..T....T.T | ========== ====== ====== ====== ============================= ================================ ================== 11 29 98.1 32 ATGTTCCCTGTATGCACAGGGATAAACCG # Left flank : TTCAGTATAAAAATCAATAAATAATTCAAATTAACTTTATGGTTATAAAGAAAACATAATATTTGGTCAATATAAGCATTTACTTTTAAAATTTAGTAATAGATTTGCAATAACAGCCTTACATAATGGTTTTTACAAAAAAATATAGTTGATTACTTTAAGATTGCTGAAATGATATTAACTAAAAACGAGTATATGAATCATAGATTATGAAAATTTGGTAACTAAGATATACAAACAAACCACTTTAAAAATAGAGTAATTTTGATAACAACAAAACAGTAATAATATCTCAATAAAATCTACTATTTTTTAACTAAATTAAAAATATAAACTTATCGGTAGAATTTCGTAGAATCTAATTTTAATTTCCATCAATTTTAATTAATTAAATAAAAACATAAGGTTATAAATACTGGTTTTGATGAAAAATAGCCTAAAAAATCCGTAGAAATTAAGCAGTCAATATTTTAATTATAAAACAGTATGTTATAATTAGT # Right flank : TGGAGGAGCAATGATTGATTCAGCAGTTGCAGATAGCCTTGATGATTAAATAGAGGAGTTTACAAAGTGGAACATACGTTAAATGAAAAAGATCTTTATATTGCTCTTTCAGATCTATTTGTAGATAATGAAGTTGATTACAACCATATAGCCTCTGTAGTAAAATTATTTCCAACATCCTATGTCGAACATGCTTTATTTAATTATGTCGCACCTTATTGTTACCACAATATGCTTACGCCAGTCCCATCTGTATGCTACTTTTTTGATGAAGATGAATTATTAAGTGCAATTGATAATATCAAAAGAAAAGAAAACCGTCCCATTAGTAAAATCAAAATGCGTATTTTAGCTTTCTATCTCAAGTTTAGATTTAAAGATGAATGGCAGAAAATAAAAAGCCTATTATGATTATTTATGTTTAAAATATTATTTAAATTCAATTAATTATATTAATTTGTTATAAACATAGATATGAAATTTTGTCAAAAAGTTTCAGA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCTGTATGCACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTGTTCCCCGTATGCACGGGGATAAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2779-2506 **** Predicted by CRISPRDetect 2.4 *** >NZ_QICT01000019.1 Gilliamella apicola strain DSM 104097 Ga0215725_119, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2778 29 100.0 32 ............................. ATCCTTTTTACAATCAGCTTTTATGATTTGTT 2717 29 100.0 32 ............................. TGCCTGACAATTACAATCCAGAAACTAGGGAG 2656 29 100.0 32 ............................. GCGGCAGTGGTTGGAATTCCTATTTTAATGTT 2595 29 100.0 32 ............................. ACAAGGTATGGCTTGTAGCACCGCCAATAATT 2534 29 86.2 0 ....................A..T..T.A | ========== ====== ====== ====== ============================= ================================ ================== 5 29 97.2 32 ATGTTCCCTGTATACACAGGGATAAACCG # Left flank : TTATCATTTTTAAGCTAAATTAAAATTATTAAAATAATCAATATAGTTATTGTTAGCAACCGATTCGTTAATATCAGCTTTATAACATTAATTATGCTTTCAATAAAAATATTCGTTAAATCAATATGATTTGATTATAAAACAACCTAAAAAGTTGATAAAAATTTTAATGTTGCTATTTTAATTATAAAACAAACAGTTATAATTAGAGTGTTCCCTGTATACATAGAGATAAACCTTCGATGTGTTAATATTGCATAGCATTTTTTTGCTATTCAAAAATCGCAATTCTGTATTTCATTGTTTACTTTTTTAATTACATGAAAAATATAAACTAATCGGTAGAATCCCGTAGAATCTAATTTTAACTTCTATTAATTTTAATTAATCAAATAAAAACATAATGTTATAAATACTAATTTTGATAAAAAATAACCTAAAAAATCGGTAGAAATTTGACAGTCAAGATTTTAATTATAAAACAATATGTTATAATCGGT # Right flank : ATAGTAGGCATAAATTTTTCCTACAGTGCTACAATTGGTTGGTATTTGTAAAAAAAATATTGCTACCGCCATCGACCAGTTGAATGATTTGCGAGAAAAAACAAAATCACCTGATAAAAAGCAACTATACTCTATTACCATTACAAAATTGCAGGGCGCGCAAAGGTGGGCAGTCAAGGTCTTAACGATTCAGATACCTGTTCATAACCAAATATCTATTTACACTCATTAACACAAAAAATCAGATTAATAGAGCTATGTTGTATAAACTATATACATATTCACAGTGGATACCATGCCACAATATGAGGATGTAGTATGAGTAAGCAAGTAGCTATTTTGGGTGATGCAACTAATTATGGTGGTAGGATCATTACAGCGTCAGGTTATGGGTATAGTGATGGTGATGGCATTGCTCTATTAGGTGATTTGGTTTCCTGTCCTAGATGTAGTAGTACTGGCAGAATCATAGAAGGGACAAACGATTTTATTATCGATGG # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCTGTATACACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: R [matched GTGTTCCCTATACACATAGGGATAAACCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 200930-200596 **** Predicted by CRISPRDetect 2.4 *** >NZ_QICT01000004.1 Gilliamella apicola strain DSM 104097 Ga0215725_104, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 200929 29 100.0 32 ............................. TAAATTTGTTATTTACCATCCATTATATAAAT 200868 29 100.0 32 ............................. GGACCTATTGCCATTTCACCCATAGTCGCACC 200807 29 100.0 32 ............................. CGCTGAGTTATCGATGTGATGCATTTGGTCGT 200746 29 100.0 32 ............................. CGAAACTGTACACGGAATTGGTGGGATAGCAG 200685 29 100.0 32 ............................. GTCGAGTGGAGTTCTCACGATTTTAGACGTAC 200624 29 79.3 0 ............C..........TTTT.T | ========== ====== ====== ====== ============================= ================================ ================== 6 29 96.5 32 ATGTTCCCTGTATACACAGGGATAAACCG # Left flank : TTACTGAAATGGTACTAACTAAAAATCGGTGCTTGAGTCTAATTTATATAAATTTTGTAACCGAACCACATAAACAAACAATTCTAAAAATAGAGTGATGTTGATAACAACAAAGCATTAAAAACATCTCAAAAAAATCATATTAAAAACATAAAAAAACTGGTGGAAATTTTCAGCAAAGTATTTTAATTAATAAGTTATAGTGATGACGTTCCCTGTATACATAGAGATAAACCGTCGATGTGTTAATATTGCATAGCATTTTTTTGCTCTTCAAAAATCGCAATTCTGTATTTCATTGTTTACCTTTTTTTAATTACATGAAAAATATAAACTTATCGGTAGAATCCCGTAGAATCTAATTTTAACTTCTATTAATTTTAATTAATAAAATAAAAACATAGTGTTATATATCATGATTTTGATGAAAAATATCCCAAAAAATCGGTAGAAATTTGACAACCAAGATTTTAATTATAAAACAGTATGTTATAATTGGT # Right flank : TTTATGCAAGATTTTGCTAATTTTTGTCAAAAAGTTTCAGATTATGGCTATGTTTCAGTATAAAAACATCGAGAATTCATTTAGTTTAATGGTTAATTTTATATAAACCAATGTTTTATAAAAATGCATATCATTCAATGTTTTAAGGTATTACTATTGTAAAGGCAATGGTTAAAGTAACGCTCTGTTAGTTCTTGATGTTCATTAGTTATCTTCGTACAATAAAAAAAATTTTTATTTTGGTTTGTTATGCAATTACATTTAGTGGTTAATACGTTTGGATCCGATTTGCAGCGTCGTTATGGCGAAAAGATCTATAAATTAACGTTACATGGTGGATTTAGTTGTCCAAATCGTGATGGTACTCTTGGTGTTGGTGGTTGCACTTTTTGTAATGTTGCGTCAATTATTGATGAATCTATCCAAGTAAAATCTATTTCTGAACAGCTTGCAACCCAAGCACATCAAATGAAAAAATCAAAGCGTTATCTTGCCTACTT # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCTGTATACACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: R [matched GTGTTCCCTATACACATAGGGATAAACCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3192-3891 **** Predicted by CRISPRDetect 2.4 *** >NZ_QICT01000016.1 Gilliamella apicola strain DSM 104097 Ga0215725_116, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3192 29 100.0 32 ............................. CCGCCCAAAATAGGTCATATAACCCATCCACA 3253 29 100.0 32 ............................. CCGATCTCGCTGAAACCCATACATTTAAATGT 3314 29 100.0 32 ............................. TAGGCATTAATAGCTCAGAGCTTATATAGGAG 3375 29 100.0 32 ............................. CTTTTTCTTTCGATGGCTATGTAGGCGTTTCA 3436 29 100.0 32 ............................. CACTACCAAAGTTAATATTTACTGGTCAACAG 3497 29 100.0 32 ............................. AAACGGCAGTGATAATTAATGAATTAACAGTA 3558 29 96.6 32 ............................A TTTACTGGAACAAAAATTAGACCTATCCGAAC 3619 29 100.0 32 ............................. AATTGTAGCGGATAAGAAGTATTTTTACATAA 3680 29 100.0 32 ............................. ACGAGTTAGATGCATTGTTAAATGAGGAAAAC 3741 29 100.0 32 ............................. TGTTTGACATATAAATAGTTCTCCTAATCGGT 3802 29 100.0 32 ............................. TTCAATGAGTTAGATAGGTTAGGAGAATGGAA 3863 29 96.6 0 .............A............... | ========== ====== ====== ====== ============================= ================================ ================== 12 29 99.4 32 ATGTTCCCTGTATGCACAGGGATAAACCG # Left flank : TCAGTATAAAAATCAATGAATAATTCAAATTAACTTTATGTTTATAAAGAAAACATAATATTTGGTTAATATAAGCATTTGTTTTAATATCGAGTAAGAGATTCGAAATAACAGAGTTTACTTAATAGCTTTCACTTAAAAAATATATTGGAGTATTTAAAGATCGTTGAGATGATATTAACTAAAAACGAGTATATGAATCATAGATTATGAAAATTTGGTAACTAAGATATACAAACAAACCACTTTAAAAATAGTGTAATTTTGATAACAACAAAGCACTAAAAACATCTCAATAAAACTTATTATTTTTTAACTGAATGAAAAATATAAGCTTATCGGTAGAATTCCGTAGAATCTAATTTTAATTTCCATCAATTTTAATTACTTTAATAAAATCATAATGTTATAAATACTAATTTTGATAAAAAATAACCTAAAAAATCGGTAGAAATTTAGCAGTCAATATTTTAATTATAAAACAGTATGTTATAATTGGT # Right flank : GCTTATTTAGCAACATAATCAATGGGTCCATATTGGTTTTAGTCTGAATAACAACCGTTAAATCGTGTTAACAGCAATCAAACAGGGCGGTAAAACTGTTTACGTGAATGGGTTGATTTAAATAACTGTCCACAAAAAGGATAATACTATGTTTAAACGGCTTGGAATAATCAACAGAAAATCATAGTGAGATAGTGTTAATGTCTCATGGTAATGAGACAATTTTGTTAGTTGTAGAGACGTATTTATTTGAAGAGATAATTGCATCATGGGTCATAGCAACATTAATTACCATATCTATTTTTTGTTTATACGCAAAATATGTTAGTCCTGAAATTTGGAATTATATAGTCGCGTTTTTATTTGGATGATGTATGAATAAATCAAAAATATTAGGTGCCGCATTAATTGTCGTTATTTTTGTTCTAATTATTTATTTCGGTTACAACAATTATCAGGAAAAAATAGACTCAAAAACGATAAATTAGAATTAACCAATA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCTGTATGCACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTGTTCCCCGTATGCACGGGGATAAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 8034-8367 **** Predicted by CRISPRDetect 2.4 *** >NZ_QICT01000016.1 Gilliamella apicola strain DSM 104097 Ga0215725_116, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8034 29 100.0 32 ............................. GACTTGCCCAATTTATGCCAGCAACGGCGGAT 8095 29 100.0 32 ............................. AAACACATTGAGCATATAGCGCATCTAATGGT 8156 29 100.0 32 ............................. GCAAACCCGAGGCAACGGGCATAACATTTAAA 8217 29 100.0 32 ............................. CATATGAACATACTGCGGTTTTGGAAAGTAGC 8278 29 96.6 32 .............G............... AATGTACGCCAGCCCAGCCGATACTGTTAACT 8339 29 86.2 0 ............C..........T..T.A | ========== ====== ====== ====== ============================= ================================ ================== 6 29 97.1 32 ATGTTCCCTGTATACACAGGGATAAACCG # Left flank : AAGATAAGTTAAATTATTAGGTCCTCTAAAAGATAGAATGTAAAGCTATAGATTGTTGCACTCACGCATACTCATCAACTGGTTATTGCTATCGGCATTTGTATTTAGTTAAAGCGAATCGAATTGTAAGTAAAGCTGGGTCAATAATGTTCCCTGTGCACATAGGCATAAACCGCGTTACAAATGAACCCGTAAAACTAACCGAATGTTTTCCCTGTATATACAGGAATAAACCAGCGATGCGTCAATTTACATAGCATTTTTTTGCTATTCAAAATATCATAATTCTAAATTTTATTGTTTACCATCTTTTTAATTATATGAAAAATATAAACTTATCGGTGGAATTCCGTAGAATCTAATTTTAATTTTCATCAATTTTAATTACTTGAATAAAAACATAGTGTTATAGATGATGATTTTAATAAAAAAGAGCCTAAAAAATCGGTAGAAATTTGGAAGTCAATATTTTAATTATAAAACAGTATGTTATAATTGGT # Right flank : ACAAATCCATCACAAATCCATCACAAACAGCCCTCGTGGCGGTTTTTATTGCCCTTAATCTTTAAATAACATACCATTACCTAAAAAAGGAGATGGTATGAAAAGAATTGCATTACTAGGATTGGTTTGTTTTACGTTGTTTGGTTGTGGTGATGATGGTGGCGGTAAAGTTACTAATGAGTTTTTGGTTGGTAAGTGGGAGTGTAAATTGGACGGTTACAGTTCGAAAATGAAAAATGGAAAATTTACTGATTATGTTAGCGATGGGTTTAATATAATAAGGAAGGAAGAATTCAAAATAGAAAATAATAAACTGTATAGTATAAGTAAAACTGAAATGGATGGACTTAGTTTTTGGGAATCGAATGATTGGGATGAAAGTGATATAACTATTACTCATACGGGGCAAACAGTAGAGAAAAAGGAAAATAATCTAATAGAAAAATCAACCAATTCTCTAATTAAAAAATCACATGATACTTATTTAATGATTGAGGAAT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCTGTATACACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: F [matched GTGTTCCCTATACACATAGGGATAAACCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3208-2508 **** Predicted by CRISPRDetect 2.4 *** >NZ_QICT01000038.1 Gilliamella apicola strain DSM 104097 Ga0215725_138, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3207 29 100.0 32 ............................. CCTTGTTTTATTAATCCGTCTCACCCTGATTG 3146 29 100.0 32 ............................. CTGACCCATATTGCGAGGTAGTCTCAAATTAT 3085 29 100.0 32 ............................. TTTTATCCTCGCAGGTTTTCGTCTGCGCTGTT 3024 29 100.0 32 ............................. AGTACCAGCTTTATATGAAGCTCTGACCTGCT 2963 29 100.0 32 ............................. GCAATCACCAATTTTTGAAAACGTGAGATGAC 2902 29 100.0 32 ............................. GGTATTTGATAATGATGATGATCTCCTAGATT 2841 29 100.0 32 ............................. CTTTTACATTTGAAATGTTCGACTTCCATGTA 2780 29 100.0 32 ............................. GGTCCATATTTCAGTTTTGGCTATGTATTTGA 2719 29 100.0 32 ............................. ACAACGCCTTCCCAGTCCAAACACTCCCTGAG 2658 29 96.6 32 ..A.......................... GGGTACATTTTGGGCGGTCGTATTGAGTTTTT 2597 29 100.0 32 ............................. TATTTTATCCCAAATCGCCCTAAATGGCGGTT 2536 29 89.7 0 .......................T..T.A | ========== ====== ====== ====== ============================= ================================ ================== 12 29 98.9 32 ATGTTCCCTGTATACACAGGGATAAACCG # Left flank : TGAAATGGTACTAACTAAAAATCGGTGCTTAAGTCTAATTTATGTAAATTTTGTAACCGAACCACATAAGCAACCAATTCTAAAAATAGAGTGATTTTGATAACAACAAAACATTAAAAACATCTGAAAGAAATCATATTAAAAACATTAAAAAGTTGGCGGAAATTTCAGCAAATGATTTTAATTAATAAACAATAAGTTATAATAAGGACGTTCCCTGTATACATAGAGATAAACCTTCGATGTGTTAATATTGCATAGCATTTTTTGCTATTCAAAAATCGCAATTCTGTATTTCATTGTTTACTTTTTTTAATTACATGAAAAATATAAATTTATCGGTAGAATCCCGTAGAATCTAATTTTAACTTCTATTAATTTTAATTAATCAAATAAAAACATAGTGTTATACATTATGATTTTGATGAAAAATATCCAAAAAAATCGGTAGAAATTTGACAGTCAAGATTTTAATTATAAAACAGTATGTTATAATTGGT # Right flank : ATAGTAGGCATAAATTTTTTCCTACAGTGCTACAATTGGTTGGTATTTGTAAACAAAATTTCGCCACGGTTATCGACCTGTGGAATGATTTGCGAGAAAAAACAAAATCACCTGATAAAAAGCAACTATACCCTATTACCATTACAAAATTGCAGGGCGCGCAAAGGTGGGCAGTCAAGGTCTTAACGATTCAAATACCTGTTCATAACCAAATATCTATTTACACTCATTAACACAAAAAATCAGATTAATTTAGCTAATTTGTATAAACTATATACATATTCACACTGGATACCATGCCACAATATGAGGATGTAGCATGATAAAGCAAGTAGCTATTTTAGGAGATATGACCAATTATGGCGGTAGGATTATTACAGCGTCAGGGCAAGGGTATTGTGGTATGGATGGTGTTGCTCTATTAGGTGATTTGGTTTCCTGTCCTAAATGCAGCAGTACTGGCAGAATCATAGAGGGGGCAAACGATTTTATTATCGATG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCTGTATACACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: R [matched GTGTTCCCTATACACATAGGGATAAACCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 81365-79935 **** Predicted by CRISPRDetect 2.4 *** >NZ_QICT01000006.1 Gilliamella apicola strain DSM 104097 Ga0215725_106, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ==================================== ================== 81364 26 100.0 35 .......................... CCGCATTTATTGGATAGCGGAATTAAATCCATGAC 81303 26 100.0 35 .......................... CCGCTCATTTTCATTGCCGATTTATAGTGATATAG 81242 26 100.0 35 .......................... CCGTTACGACCTCGTCACTGGGCGTGGTTAGCCAA 81181 26 100.0 35 .......................... CCGCCGAGCAATATTTGCAGGTTGGACAGATCTAC 81120 26 100.0 35 .......................... CCGGTTTTCATCTCCATTGCTATAGTTTAGTACTC 81059 26 100.0 35 .......................... CCGACGAATTGAATAAAAAAATAATTTATAATTTT 80998 26 100.0 35 .......................... CCGACATGAAAGTTGGTGACATGATCATGATGAAA 80937 26 100.0 35 .......................... CCGAGCTTTGTGCAGAGGGTCTGTTGTGTGTTACC 80876 26 100.0 35 .......................... CCGTTTTGGTGTTGCGCTGTTTCGGTCTTGCGTTA 80815 26 100.0 35 .......................... CCGTGTGGTTATACACCTCGAAAAAATCAGGTGCG 80754 26 100.0 35 .......................... CCGAAATTAAATGGTTATGTCAAAATAAAGAGCGT 80693 26 100.0 36 .......................... CCGCAAACTTAACTCGCCGAACAGGTAATCAGTGAC 80631 26 100.0 35 .......................... CCGTGCGAGCGAGGCTTTGTCGATTTTAGGTGGAA 80570 26 100.0 35 .......................... CCGTATTGAAAGATCCTGATTCTGCAAAATATTCT 80509 26 100.0 35 .......................... CCGACTTTGTATCAACTAAATTTCCCATTATTAAT 80448 26 100.0 35 .......................... CCGCTAAGAGTAGAATTAGGATCAGCGAATTCAGA 80387 26 100.0 35 .......................... CCGCGCTTTAGCAACTGCTGTGCTTTTTTCCTGTA 80326 26 100.0 35 .......................... CCGCGAATACACAAGAACCCGCGGCGCAGGCATTT 80265 26 100.0 35 .......................... CCGACGTTATGAATCGAATTTTTAATAAAGAGGAA 80204 26 100.0 35 .......................... CCGTCTAGATGTTCTCCATAATATTCATCTTTACT 80143 26 100.0 35 .......................... CCGCCGCCTCATTCCTCAATTACTCCCTCATCTGC 80082 26 100.0 35 .......................... CCGCAAAAGCTCCGTATGAAGCACCTGATAATCTC 80021 26 100.0 35 .......................... CCGCATATAATTTATCTGCTTTTATATCTGATACT 79960 26 100.0 0 .......................... | ========== ====== ====== ====== ========================== ==================================== ================== 24 26 100.0 35 GTGTTCCCTGTATACACAGGGATAAA # Left flank : GCTTATTGAAGAAGTTTTGTCCGCTGGTGGTATCGAACCGCCTCTACCACATGATGATGCCCAACCACCAGCTATCCCAGAACCTCAATCTTTAGCCGATAGTGGCTTTAGGAGTCGCTAATATGAGTATGTGTGTTGTGGTAACTGAAAATGTTCCACCTCGATTACGTGGTCGTTTAGCAATTTGGTTACTTGAAATTAGAGCCGGAGTTTATATCGGTGACATATCAAAACCAATAAGAGAAATGATATGGCAACAAATTGTTAAACTTGCAGAAGAAGGCAATGTAGTCCTTGCTTGGGCGACTAATACAGAATCAGGATTTGACTTCCAAACTTATGGCGCTAATAGAAGGGTTCCGGTAGATTTAGATGGACTAAGATTAGTCTCTTTTTTACCTATTGAAAATCAATAGGTTAACGTTCTTTAAAAAATTAAAAAAATTGGTAGATTTTTGGAGTGACAATAAATCTAAATAAAACAATTATATATATTTAGA # Right flank : CTATATTCGTCATTTTGCAGGGCTTTCTGCAAATTGTGTAAGGATAAATCAGCTTTTACCTGATTTTTTATTTAACTGAAATCCTTTGTTGGATAAGTTATTGCTAATTTGCTCTAAGTCAGAATGTTCAGTTTTTTCTGAAACATTAAATAATTGAGCAAAATATTATACAGTTTTGTATCCATTTTGTTTTATTAGCGGTTTATCTAAAAAAGCTTGTCTTTCTGTTAGTATTGGATACCTTCTTGTTCAATAACAACACAATGATTTGATTATAATTAGTTAAAATAGTTTTTATATCACAAAGATCTTCAATAACTTGTTGCAATGATGGTATTGGAAAACACAATAAGGTGTAAAAGTAGATTTAATTTTTGTCTAATATCTTTATACTTATCGATAATTTGTTATAGGGAATAATATGTTTTTAATAGGTTTTTGAGATTATTTGCGTTAAAAGCATAGATTATGGTAGATTTTTCTTATTTATTATGGATATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTGTTCCCCGTATACACGGGGATAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //