Array 1 742-42 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAERIV010000033.1 Helicobacter fennelliae strain DSM 7491 NODE_46_length_13796_cov_107.156571, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 741 36 100.0 31 .................................... AATACCAGCGTGGCTAAGCTACATTTTAGAA 674 36 100.0 32 .................................... AGCAAGCGCAGCTGCCTTTGCGCCTATTTATG 606 36 100.0 31 .................................... TGCAGTTTCTTCTGCTAAAGCCCATAGTTTT 539 36 100.0 30 .................................... AATTAAATCTGGTGCGTCAAAAAACACTAA 473 36 100.0 30 .................................... GTAAATTCAACACATAGCTTAATTAAAAGG 407 36 100.0 30 .................................... GCAATATCATTCTGTGGCAAGCCGATTATT 341 36 100.0 30 .................................... TAGTGAGTCAGTCGGCTTTTAATGAAAAAA 275 36 100.0 30 .................................... CCCTCCGCTCATTTATTCCCCCTATGATTA 209 36 100.0 30 .................................... TCATTAAGTCTTGAATTGCTGAGATTGTAG 143 36 100.0 30 .................................... ATACAATAACAAAGGACACCCTGCTCAAAG 77 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================ ================== 11 36 100.0 30 ATTCTAGCATATAGAAGTTTAAGAAGGGACTAAAAC # Left flank : CTTTTTTATGATGCAATTTAGCGTGTATATGAAAATATGCAAAGGGTTAAGCTCGGCAAAAAGCTCTCTAAATGCTGTAAAAAAGGTGCTTCCACCTTATGGTAATGTCCGCGCACTTATCATCACAGAAAGACAATTCGACAATATAGAAATATTATTAGGAAACCCATCATTTAATGAAAATGTTAATGAAGATAAAAATCTTGTGCTATTTGACTTTGACGAAAATGCGGGTGATTACCGCTATGGTATGGAGTATCAAAAACAAGAAGAATTGAATACAACTACTACACAACCAAAACAAAAAATCAAAAATAGGCAACCAAGCTTATTTGAATTCTAGGGTTTTGATAGGGATATGATTTACCCTGCGGAAGACCCCTTACTCCCTTATTTTAGTCCCTTCTTAAACTTCTATGTCGCGAATTATAAAGGATTTCAGGTAATTTCTAGCTTAAAATCCTTTGAAATCCCTATCTATAGGCACCAACAGAGAGCCT # Right flank : CTCATTAAGTCTTGAATTGCTGAGATTGTAGATTCTAGCATA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCTAGCATATAGAAGTTTAAGAAGGGACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 1 1478-1647 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAERIV010000078.1 Helicobacter fennelliae strain DSM 7491 NODE_114_length_1686_cov_94.650715, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ============================ ================== 1478 38 100.0 28 ...................................... CACACGATGATATGATAGATAGCACGAC 1544 38 100.0 28 ...................................... TTTTTTTGCTTAATCCTAATTGCTCGCT 1610 38 97.4 0 .....................................C | ========== ====== ====== ====== ====================================== ============================ ================== 3 38 99.1 28 TGTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAATT # Left flank : GATTCTTCATTGCCAAACGCCCATATCATCGCCAATAAGAGTCTCGTTCCCCTCTTTTTCACTTATCCAATCCCATTCTTTAACATTCAAAGTGAACCATTTGCAATCAATAAGATTGTTATATACAAATATGCCTAAACACGCCAAGTCTTTATCATTGCCTTTGCAATGATAGGTGTGTTTATCTATCTTTATAAGTCCAGATTCTTTAGCCAATTCATCAATAATCTCATACATTCTATCTAAGTCGTATTTGTTTTCTTTTAGAATCTTTTCTTCATCTAATACAATTCTAGTGCCTAATAATGAGCGTCTTTGTGTGTGTTGTGTAGATATGGCTGTCATTTGAAACTCCTTTGATTTAAGAGATTTTTATCATTATAACATTTATTTGATATATATAATATAAGTATAGATAAATATAGCAAAGTATATAATATTATATGTTTTACTATAATATTATATATTATCTATGCCTTTTAATATGTTTTTTTCTTGCA # Right flank : TACAATCTCAGCAATTCAAGACTTAATGAGTTTTAGTCC # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA //