Array 1 65761-63535 **** Predicted by CRISPRDetect 2.4 *** >NZ_RRLX01000002.1 Escherichia coli strain FWSEC0347 FWSEC0347_contig00002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 65760 29 96.6 32 ............................T AATGCAGTACGCGCCGGATCCGGTGTTACGTC 65699 29 100.0 32 ............................. CATCCGTTCAAATTCCATCAGATAGCAAACCA 65638 29 100.0 32 ............................. CTGCGCGACCAACGGGAACAGGGCAAATGTGA 65577 29 100.0 32 ............................. TCGCACTCAATTTCGTCAGTGAACGGGAACCC 65516 29 100.0 32 ............................. ACGCCGAAAACGGTTGGTGCGTATAGCGATAT 65455 29 100.0 32 ............................. CGGAACAACAGGTGCAACTCAGGGCACAGGAA 65394 29 100.0 32 ............................. TAATCATTTGGGGCCCCATTAATTAAAAGGAT 65333 29 100.0 32 ............................. GCGCTCACATTTAGCGCCAGAGCCAGGCGGCG 65272 29 100.0 32 ............................. AATTCGGAATCACATTAAAAGGGAACCCGATA 65211 29 100.0 33 ............................. GTTTGAAGGGCGTTTGGAGGAACCCGCGCGTGC 65149 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 65088 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 65027 29 100.0 32 ............................. CCTACGCCATGTGGATTAGTCCGGCGTTTCAT 64966 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 64905 29 100.0 32 ............................. GTTTCTCATATTTCGCGTCAATCTCCACCAGG 64844 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 64783 29 100.0 32 ............................. GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG 64722 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 64661 29 100.0 32 ............................. TTCTCCAATCAGCAGTGCCCATCTGATATGCA 64600 29 100.0 32 ............................. TCAGGGGAATTGCGATATTCAGGCAGCGTAAC 64539 29 100.0 32 ............................. ACGAGGTACAGTGGTGCAAAAACAAATTATAG 64478 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 64417 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 64356 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 64295 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 64234 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 64173 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 64112 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 64051 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 63990 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 63929 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 63868 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 63807 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 63746 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 63685 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 63624 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 63563 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 37 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 91735-91462 **** Predicted by CRISPRDetect 2.4 *** >NZ_RRLX01000002.1 Escherichia coli strain FWSEC0347 FWSEC0347_contig00002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 91734 29 100.0 32 ............................. AGATTTGTAGAAAAATAGTCATTCTCTGCCTG 91673 29 100.0 32 ............................. CCGGACACTACCGAACGACAGCGGCGGCGGGC 91612 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 91551 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 91490 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 5 29 99.3 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATTGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //