Array 1 52097-53283 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEFBX010000004.1 Hyphomicrobium sulfonivorans strain S1 XQ-HS_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 52097 29 100.0 32 ............................. GTCGAAGGTCGCCAAGCGCTTCATTCTCAAGG 52158 29 100.0 32 ............................. GACGTTGCCGATGTACGTCGCGGCTACGAAGA 52219 29 100.0 32 ............................. TATTTTCACGCGACACCCCCGAGCAATTACCC 52280 29 100.0 32 ............................. TGTGCCGGGCCGGATTTCCGGGAACCACTCAC 52341 29 100.0 32 ............................. TGCTGCAGCGAAGGCTGCCGAAGCGACCAAAA 52402 29 100.0 32 ............................. AGATCCCCCGTTTATTCCCGCGGGGCCATGGG 52463 29 100.0 32 ............................. CGGGTCAAAACAACGTCGACGGCGCCCCGCCC 52524 29 100.0 32 ............................. TTGAGGAAGTCGCGGTTGATCGGCATCCAGTC 52585 29 100.0 32 ............................. TATTGGTTGCCGCGCGACGGCGGCGATTGGAC 52646 29 100.0 32 ............................. GGGGAGACGCTGGCGGCATGGCTGGCGAAATG 52707 29 100.0 32 ............................. AGACATAGCGACCGGGCCTACCATCAGCGTAC 52768 29 96.6 32 ............................T CTCGAACAGATGGCCACGATGCTGGGATACGA 52829 29 100.0 32 ............................. GGGGAGACGCTGGCGGCATGGCTGGCGAAATG 52890 29 100.0 32 ............................. GTACCGCTCAATCAGCCAGTCTTTGTTGCTAA 52951 29 100.0 31 ............................. GGTCCTTTCTTGTCGGGGACATGCCGGGCTC 53011 29 100.0 32 ............................. GCCAGCGTAAACACCTTCACGGCTTCGATGCC 53072 29 100.0 32 ............................. TCGTTGGCCATCGCGACTGCCTCGCTCGGCGT 53133 29 100.0 32 ............................. GATCCCCATACAGGACATCGTTGCCGGCGATG 53194 29 96.6 32 ............................T CTCGAACAGATGGCCACGATGCTGGGATACGA 53255 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.7 32 GGCTCCTCCGCCCACGCGGAGATCGACCC # Left flank : TTTCAAGACTGATCGATAATATCAAATCACTCGTCGGACCGCCCGACCTCATGAACCGCAGTGCTGATGTGACGCCAGCAGAAAATTGCAGTCCAACGCCGAAGCCTGCGCCCGACCAACGCAGTCAAACCGGGGACGACTGAGCAATGCCTCTTTGCATCGTTGTCACACGAGATGTCGAAATGCGGTACCGGGGCTTCCTGGGTTCTGTCATGCTCGAAATTGCGCCCGGATTTTACATGGGGCCGCGCGTCACCAAGGGGGTTCGCGAGCGGATTTGGAGCGTTATGCAGGATTGGCACGGCCACCTTCAGCGCGGCAGCGTAACCATGGTTTGGCGTGAGAAAGGAGCTCCGGGCGGATTGCGAGTGCAAGCCCTGGGCGAGCCTCCCAAGGATCTCGTCGAGCACGAAGGTTCGCTTCTCGTTCGCAGAGCTCAACGCGGGCTTTGACCGGTGTTCTTTGACAAGTGAAGCAATATCAGTCTCTTACCAAGGAGA # Right flank : CGCATGTCTAGCCACGTCCGCAGCGTGTTGCTGGGCTCCTACACCAACGCATTATATCTTGTCGGCATCAGCGAAAACGCCGACGGCAACGCCTACGACGGCAAACTCGGCGTCAAGGTTGCGTGGTGAAATTCGCCATCCGATCCAATGTTCAGCGCGTTGCCAGTACGCCGTCAGACGCAGTACTGGCCAATAGGCCTATGGACTAAGATCAATGCCTGCCGAAAATACGAAACGTGCGTCGGTGTCGCTGCTACTGATATTGGTGTCCCAGTATCGGAAGTCGAAGAAAAGGCGTTCGACGTCGAGGCGCAAGCCAGCGTTCCAGTACACAATCGACTTGTGCGGATCGCCATCAACATCGACAAAATAGCCACCAACGTAATGGGCGTTTTCGGCCAGTCCCCACCGGCCAACCGTTGCACTAAGGGTCGGAGTAAAAACGCCGACATTCTTAAGTTTGTAGCTGACATCGCCTTGCAGCGTTAAACCCTCCGGCA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCTCCTCCGCCCACGCGGAGATCGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.20,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 230149-229572 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEFBX010000003.1 Hyphomicrobium sulfonivorans strain S1 XQ-HS_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 230148 29 93.1 32 ............T...............C GAAGAGATGCTGCCGTGATTTCGAGGGGTGAT 230087 29 100.0 32 ............................. TACGGTCAGCAGTTCGCCGTGCCGACCGAGCC 230026 29 96.6 32 ............................C TCTTTCGCCTCGATAGCGCGCAACAGCGTCTG 229965 29 100.0 32 ............................. AGCCCCACGCGGGGGCGGTGTGGGGCTACTTG 229904 29 96.6 32 ...............C............. CACGAGGGCGGCACGCCGGTCTGGAGTTCGGC 229843 29 93.1 32 .......T....T................ CATCGAAGCGCAGGAGGCGCACGCAGCATGAA 229782 29 100.0 32 ............................. TTCATCGTCACCGATTACGCAGCCGCTCTCGC 229721 29 100.0 32 ............................. CTCGGCTTACCTGTCATTGCGGCGAATGAAAC 229660 29 93.1 32 .............A.......T....... ATTCCACTCAGACGTGGAGCGGTCGGGGTCAC 229599 28 86.2 0 .......................-.T.TC | ========== ====== ====== ====== ============================= ================================ ================== 10 29 95.9 32 GTGTTCCCCGCACGCGCGGGGCTGAACCG # Left flank : TCGACCATGGAATGGCTGGGCCGCTATTCGATGACTGACGTGATGGTGCTGGCGCTGATGATCTTCTACGTCAATTCGTCCGGCTACACGGAAGCGGTGGTGATGCCGGGCGTCTACTTCTTTGCGGCCTCCGCCATCATCACCATGCTGGCCTATGGCTGGGCCAACACCGTGCCGCCGCGCGGCAGGGCAACGGATGCGGCTGCTGCGCTAGCAGCGGCCGATGCCTCACCGGGCGATCCAGTTGCCACGCCATCAAGCGGCGCGCGTCCATCCGGTTCCGCTTCGCCTGAGATTGCATCAGCGCACGCGATACAGCCCGCAACCACAGCGCCCACAAATGCTGCCGGTCAGGTCGTTACACTGCCCACCAACCCCGGACGCCGCTATCACCCAACCACCGAACCGGCGGAATAACAACGAAACTTGAACTGCGTTCAATTCGGTACCGTTCTTTGACATCGGAATTTGTAATTCGTACCAATGGGTTGCAGCGAAGA # Right flank : CCGGTGCGAGCTGACGCACCGACCACAGGCTGCCCCTCTCGCGAATCTCAGCTACATTCGCAACCGGCGTCGCCTGCGCCTCCCCCCTCCAATCGGGAAAGCACACTGCATGCAGGGCATTTTGCAAAATCGCGAACCGACCTGTCGGGCCTTGCATAAGGAGGGATTGCTCGAACTGCCCGCTACAGGAGGTTTTCGACGTGTCCCTCTCCGCTCCGATCTACGTGCTCAAGCGCAAGGCAAAGCAGCTCAGTCGCGCCAGCAACATCCCGCTTCACGACGCGCTCGATAGAATAGCCGTCCAGGAAGGCTTCACGCGCTGGAGCCTGCTTGCAGCGCATGCAGCGTCGGTCACTACGGCGGCAAAGCTGTTTGCGCGTCTGACAGCCGGAGATCTGCTGCTCATCGGCGCCCGCCCCGGCCAGGGCAAGACGTTGCTGAGCCTGCAACTCGCCGTCGAAGCCATGCAAGCGGGCAGGCGTAGCGCTTATTTCACGCTT # Questionable array : NO Score: 5.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACGCGCGGGGCTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCACCCGCGGGGCTGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 416936-417333 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEFBX010000003.1 Hyphomicrobium sulfonivorans strain S1 XQ-HS_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 416936 29 96.6 32 ............................T GTCTCGCCCGGATTAGACGCGCTCTTGATAGC 416997 29 100.0 32 ............................. GTCGCCAAGGCGATCAAGGACGGCAAGAAACG 417058 29 100.0 32 ............................. ATCAAGGCCTGGAGCGTCGACCTAGACGATCA 417119 29 93.1 32 ...........G................G ACGGTGGGCCGGACTGGAAGCCGGGTGATTAC G [417136] 417181 29 100.0 32 ............................. CACCACGGCCGAAATTCTCGGCGTCAACGAGA 417242 29 96.6 32 ............................G TTTTCGAGCGGCACCGGCCCGGAGTTTTGCCG 417303 29 86.2 0 ............T.............AAA | A,C [417325,417327] ========== ====== ====== ====== ============================= ================================ ================== 7 29 96.1 32 GTGTTCCCCGCACGCGCGGGGCTGAACCC # Left flank : CTAAAGCGGTGCCGGCCTCGGTTTCACGGTTTGGAAGGGCGTTGGGTGATTAGCTCAGTTGGTAGAGCAGCTGACTCTTAATCAGCGGGTCGAAGGTTCGAGCCCTTCATCACCCACCATCATTTACTTGGTTTTCCTCACAAAACAGATCGGCACGGGGCAACGCCCCGGCAAAATTGAATAGGCCGGCGTGTCGGGATGACGCGCGGGCCTGAATTCGTATTGCTCGTCGCACGTTGGGCTTCCCGCTCCCGGAGCATCAATGCCGTGAATGCCGGATTCCATCCTGGAGGACAGCTGCGGTGTGTCAGAGCGAGCGCTTAGCGTAGCACCTGTTTTTGGGCAGGTTTGAACCTCCGGATAGCCCTGTGGATGTCACCGAAATTGCCCTTGAAGAGGCGGCTCGGTTCATTGCTGATGGACATCGGACAAACCGTGAACGCCGGTAGGTTCTTTGACATGCGAATATAACCTGCAATTTCAGACGCTTGTCTGGAAGA # Right flank : ACTTGCCTGTTGAGCTGGTCAAAACACTAATATCGTTTTGCGATCTTTAGGTGAGTGCCTGATCAAAAACGCCAGCCTATCCATAGGCTGGCGTTCGTAGTTAATGGTGACATACTTTACCAGGTGAGCTGAGCGCCCGCACGGCCACCAACGGTCGTCTCGCTTCCACGTCGGCCGAAGCTCTGCTCCTCAAGACTTACGCCAACCGCTCCGGATACTGCCAGCCGCTCACCGCTGCCAAACAGATCGCGACCGACGACACCGACTGCACTGAAGCCTAGAGCAACGTTCTCGTTCCAGTAGGCGATGTTACCCGAGATGCCGAACGTCTCATTGGCTACAAGATCCGGGTTGACCATCGCCATAGCGATCGCCACACCGCCATTCAGCTCACTGAGTGCGCTGAATATGGCGCCGCCGTCAGAGGCCAGATGCCCATTGGCGTCGGTCGTGACAACTTCCAGCGGACCGTTCTGACGATTAACGCTCGTCGCCGAGGT # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACGCGCGGGGCTGAACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCACCCGCGGGGCTGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //