Array 1 10880-12910 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCPV01000023.1 Geobacillus zalihae NBRC 101842, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 10880 30 100.0 36 .............................. ATCACCACCTCCGTTTCTTCCAACATCACTGTGAAA 10946 30 100.0 38 .............................. TCATCAAAAATCAAGTGGAGGTGGAGAAGGTGGCAAGA 11014 30 100.0 39 .............................. GTGGGTCGCCTTACCCGCGACCCTGAACTACGGTATTTG 11083 30 100.0 35 .............................. TGAACATTTCTCGCTTTGCGTCTTCGGCCGTCATC 11148 30 100.0 35 .............................. CAAAAAATTAACCGATCTTATTATGATCGGCTTAA 11213 30 100.0 36 .............................. AAAACTGTCATAAGCTCATCAAATACAACAATCAAA 11279 30 100.0 35 .............................. ACATCGAGTGTGTGGAACAGCATTAAGAGTTTTGT 11344 30 100.0 35 .............................. AATCAATCGGGCTTTTTGTTTCTTCATCATAGAGC 11409 30 100.0 39 .............................. CAATAAAGAACTTACCTTTCGGTTTTGGATTGCGTTGTA 11478 30 100.0 38 .............................. TTTCTACCCTGCATAAACGTCCGCTCTCCCGATCAATC 11546 30 100.0 36 .............................. TTTCACGCTCCCACTGAGCCAATGCGGCGACAAGGG 11612 30 100.0 39 .............................. CGTCACCTTTGACCGAGCAATGAAGGCGCTCGCGGAAGG 11681 30 100.0 36 .............................. GAGATGTGGCGTAAAGGACAATCCAGAGTTCATACA 11747 30 100.0 38 .............................. AACCCATCTTTAATGAGTCGTTTGGCCAGCGCGATTTG 11815 30 100.0 36 .............................. GTCTGAATTTCTGAATGGTGTACCGCGTCTTCAAAT 11881 30 100.0 38 .............................. TTCGGCAAGTAGCCAAAATTGTTGGTCTGGAAATTCAG 11949 30 100.0 39 .............................. AACTGGTATCAATAAAAAGGAGGCCGCATAATTTGTCGG 12018 30 100.0 38 .............................. AGAGGTGGTTAAATGAAATATATCATTGATCGCTTCGA 12086 30 100.0 37 .............................. TTCTATCCGAATGTACGAGCTTTTGAAACGTTGGCAA 12153 30 100.0 36 .............................. ATAGCGACAATTTGCGCTTTGAAGCCGTTTGGTGCG 12219 30 100.0 35 .............................. ACCGGAAAAGATTTCGTACTGAAACCTGCAATACG 12284 30 100.0 36 .............................. ACGCTTGCCAGCTTGTCGGAAGTGTTTACCCAGGAC 12350 30 100.0 37 .............................. ACCGGCACGGCGAAATTCCTGCCGTGCCGGCACGCTC 12417 30 100.0 37 .............................. TTCGCCTCAGGTTGGTATTTTTCCGTTGCCTTTCTTT 12484 30 100.0 38 .............................. TTGTTTTTCGTCATTCCGTATAGTTTGCCGTCATATTC 12552 30 100.0 35 .............................. ACAAAATGATCAATGGTCTAGGCATTAAGGTAAAA 12617 30 100.0 35 .............................. GACGAAGCGAAAACGTGGCTACGGGTGGATTTTAG 12682 30 100.0 37 .............................. CCCGAGAAAGCCTTTTTGTGAGTGGAGTAATAGTTAC 12749 30 100.0 37 .............................. ATGTGAAGGAATCGGTCCATGAACGCTTTGTCCTGAT 12816 30 100.0 35 .............................. TACTCACTCGTACCGTTCCAATCGGACTGTTTCAG 12881 30 83.3 0 .C.........C..C..C..T......... | ========== ====== ====== ====== ============================== ======================================= ================== 31 30 99.5 37 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : GAACCCGGCGCTGTCCGACGACATCATCCGTGTCGCCCGCTCGCCGATCCGCAAACTTGGGCCGAACGACCGCCTCGTCGCGCCAGCCGTGCAATATTGCGCTTTATTCGGCAACGTCCCGCACGGCTTGGCTAAAGGAATCGCCGCCCTCCTGCGGTTCGATGACGACCGCGACGTGGAAGCCGCCGCCCTTCAACAAACAATCGCCCAACATGGAATCGAAGGCGCGCTTCGGCAATACGCGGGGCTTGAAAGTGGGCACCCGCTCGTGGCGGCGGTGAGGGAAGAGTACGGGAGAATGGAGAAAAACAAAAGCTGACCGCCTTTCAAATGTCGTCGACCTCCAATCGTGCAAAAATCCCGGGGGATCGACGACAATGTTTTTTTGCGTCAAAATCCTACAACCAACACGGCTCAGCAGTATTGACAGAATTTTTGAAACGTGATATTCTGAAAACAGCTCAGAGAGAAAAAGCTTGATTTGATGCGTATGGTTTGGG # Right flank : CACTGTGTAGTACGGCACAACTTTTTCTGTCTCCCATGCAGGATTTTCACCCCCTGCTTGCGAATGGATAGAATCGAACACGTTCAAAGAGGGGTGATCGAATGGCCATTGACCATGACCGATTGTTCAAAGAGCTGATTCAAACGTTCTTCGAAGAGTTTCTTCTCCTCTTTTTCCCCGACATGCACGAACACATTGATTTCCGCCATTTGTCCTTCCTGTCCGAAGAACTGTTTACCGATGTCACCGCAGGTGAAAAATACCGCGTCGATCTATTGGTCGAGACGAAACTGAAAGGAGAAGATGGGCTGATCATCGTTCATGTGGAGAATCAAAGCTATGTGCAACCATCGTTTCCAGAGCGCATGTTTGTCTATTTCAGCCGTCTGTTTGAAAAATACCGCACCCGCATCGTTCCGATCGCTGTCTTCAGCTATGAGGCCCTTCGCGAGGAACCGTCCGTGTTCTCAATCGAGTTTCCCTTTGGCGACGTGCTGCAG # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 20895-21452 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCPV01000023.1 Geobacillus zalihae NBRC 101842, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 20895 30 100.0 36 .............................. CCTTTTACGTCACCAATCACAATTCCTGTTACCTCG 20961 30 100.0 35 .............................. GAATCACGCAAGCAAACAGTTGCTACACTGCTATC 21026 30 100.0 34 .............................. TCGCGCCGGCAGCGGCAGAACTTGCGCAAGCCTA 21090 30 100.0 36 .............................. AGGAGGGAACAAAATGAAGAGTCACACATTACAAGT 21156 30 100.0 34 .............................. TATAGTGTTCTTTACTTGCTTCCATGTAATCAGC 21220 30 100.0 37 .............................. ACGCTTTCGTTCCCATCGCTTCGACTTGTAGAAAGGA 21287 30 100.0 38 .............................. TCTTGGAATTGGGATAAATTCTTTCCAACCAAGGATAT 21355 30 100.0 38 .............................. AAGAGATTGTCACCACGATCAAACCGTATCTTGCGAAG 21423 30 96.7 0 ............................C. | ========== ====== ====== ====== ============================== ====================================== ================== 9 30 99.6 36 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : TGGGAGCGCAAATCGCCTACGCCCGTTTTACTGCCTTGCCGCCGCTTGTGTATGTGAGTGTGTTCGGGCGCTTGATTTTGTCGCCGCTGTTGGCTGCGTCTTTGATCTTTCTATTAGGAATGGATGGAGTGACGGCTCAGGCATTGCTCATTGCCAGTTCCTATCCGTGCTCGCGCAATACGGCGCTGTATGCACTCGAGTATGACTGCCACCCAGATTATGCCGCCCAGGCGGTGTTGGTGTCGACCTTGTTGAGCGCCATTACCGTGACAGGCGCAGTATATGCGGCCCGCCTGCTGTTTCCGATTGGCGGATGAAAACGGGGGCAAGTTGTCGTCGACCTCCAATCGTGCAAAAATCCCGGGGGATCGACGACAATGTCTTTTCGCGTCAAAATCCTACAGCCAACACGGCTGAACAGTATTGACAGAATTTTTGAAACGTGTTATTCTGAAAACAGCCAAAAGGGGAAAAGCTTGATTTTACGCACATGATTTGGG # Right flank : CTATCTCCCTGCCACAGCTGAACCACTGCTGAGTTCAGCTTGTTTTACCGCTCGACATAGAAGACCGGTGAAAAACGGTGGCTTTCGCGTAATCAGCGTTTTGGGGCGCGAGAGAAGGCCTAGTTTTAAAAGACTTATCCACTTGAGAAAATAGTGTTTTTCGCGGTTTTTTCACTACATCACCACCCTTATAGGAAAAGGACGAATGCGAAATGGCACATGCCAAAAAACGTGGGAGGGATAAGGAGGAGTTCGGCCGCGAAGGGCGAATACAGTACGGTGAATCCGACATTGCCGGGAGGGAAAACGTGGCTAGGAAGCGAATCGATCATGACCGGTTGTTCAAAGAGCTGCTGTCGACATTTTTTGAGGAGTTTTTGCTTCTTTTCTTTCCCGACGTGTACGAGTACATTGACGTTCACCATCTCTCTTTCCTCTCCGAGGAACTGTTCACCGATGTGACGGCCGGAGAGAAGCACCGCGTCGACTTGTTGGTCGAA # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 1-1687 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCPV01000053.1 Geobacillus zalihae NBRC 101842, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 1 30 100.0 36 .............................. ATCCGTGGAGATAAAGTATTTTGACGTTGACGCGTT 67 30 100.0 36 .............................. AAATTGATCAGACTGAGCAAAGACGAAGCACTTGAG 133 30 100.0 37 .............................. TCACTCGCGACGGCATGATCCGGGTCGCGGGTGAGCC 200 30 100.0 35 .............................. CGATCAAAAAAGCCTAGATACCTTTCTGAAAATGC 265 30 100.0 36 .............................. GAATTTGGAAAATGGAGAAAACCTTTTTCCGGGGAT 331 30 100.0 36 .............................. CTACAGAGATTACTACAAAGATAGATGATGATAAGC 397 30 100.0 36 .............................. AGCGCTGGGTAACCGCAGAGGTGTTGCCAACCATCC 463 30 100.0 38 .............................. TGACGGTGCCGACGACATGGGGATCCATGTAGAGATGA 531 30 100.0 35 .............................. CATCATCAAATTGTTTTATGATGATCTCACCATGC 596 30 100.0 37 .............................. ACGCCTTGGCATCGAAACGATAATCGCATGTGGGCAG 663 30 100.0 36 .............................. GAAGATATTAAATTAAGATTATATGAGTATTTTAGC 729 30 100.0 36 .............................. TCCGTTGTCATTGCTGTAAGAAATAACTGTTAAAGT 795 30 100.0 39 .............................. TCAGTCCAGCTATATGGCTTTTTCAATCCTGCCATTCCT 864 30 100.0 35 .............................. GGGGGATACTGAAAAGCTTCAAAGAGGACGGCATC 929 30 100.0 36 .............................. ACGCGAACGGGGGAAAGTCCGTCCAGACGATCCGCT 995 30 100.0 35 .............................. CGAAACCTGGATAGCAACCACAGCTGGATCAGTAA 1060 30 100.0 36 .............................. GACTATTCCTTGGTCAGTAGTTGTGATGATTTCCAT 1126 30 100.0 37 .............................. AACATGATCCCCGCCTCATCAATCAAAACGAGACATT 1193 30 100.0 37 .............................. CTGGTTCAACAGCTGAAAAAGTGATGTATGGTATTGC 1260 30 100.0 36 .............................. ATAAATTACACAATAACGCTATAAAGCGTCATGAAA 1326 30 100.0 35 .............................. TATGAACGGCTGAAAGAGCAGATGGGCGTCACACA 1391 30 100.0 37 .............................. TCCATCCGATGAAGATGAATGTTGCGAAAGTTTTGGA 1458 30 100.0 34 .............................. CAGCAACGATTGGGATTATGCAACGCGAGCGCAG 1522 30 100.0 39 .............................. ACGGCAAACCCTAGCGCTCCGCCAATCGCAGTGGCCGCC 1591 30 100.0 37 .............................. GCAGAAAATGCCTTTTCCACTTCCGCCAACACTCTTT 1658 30 96.7 0 .........................A.... | ========== ====== ====== ====== ============================== ======================================= ================== 26 30 99.9 36 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : | # Right flank : CTTATCCAACTCCCCGTCTTCCACACATATCTGAATCGCGTTTTCACCCACGCAATTTGGTGATCTTTTCTCCTCTTGTGCTGTCTTCGCTGGCAATGTGGAGATGACCCACCATCTTCCCTTGATCCTCGCCACGCGCAAAACTTCTTCTTCGTTCTGTTTTTCTCGCGGCAGCTTTGTTCGATGCGCTATACTTGGATAGAAGGAGCAACATTTGTTTGCTTCCGGATGGGCGTTTGTTTTTGCTTTTTCACGATGGGGGCAAGCAAAGGAAAGAAAGGGGAACGGTTATGCGCTGCAAGCTTCGCGATCTCGGTTTTTCCATCGGCACGCTTCCGGTGGGGAGGCGGAACCAAATCACCGATGTGCCCGGGGTAAGGGTGGGGCATGTGACGATTCGCGAGGACATCGATGAACGGACGGTGATCCGCACCGGGGTGACGGCGGTGCTGCCGCATGGGGGCAACTGGTTTTTGGAGAAAGTGCCTGCGGCTTGTTTT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 4511-4939 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCPV01000070.1 Geobacillus zalihae NBRC 101842, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 4511 30 100.0 37 .............................. TATCTCCCTTTTCTCTTTCTTGTAAAGCTAAATCAGC 4578 30 100.0 37 .............................. ATACAAGAAGACCTAAGGTAGAATGACCAGAATGGAA 4645 30 100.0 38 .............................. ATTTTTGATTCTAGTATTTCAGAGACGATGGAAGCAAT 4713 30 100.0 36 .............................. ATTTCTTCGCCGCGTTCCCAAAGGATTCGATAATAT 4779 30 100.0 37 .............................. TCAGGAGCCTCATTTTCATATCGGGGAACTGGATCAA 4846 30 100.0 35 .............................. CGAAAAAAGGCAGTTCTCTGCCGTATAACAACAGC 4911 29 86.7 0 ................CA.....-...G.. | ========== ====== ====== ====== ============================== ====================================== ================== 7 30 98.1 37 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : GTATTTGCGGCTATCTGAAGAGGAGGAAGCAAAACCGCGACACGAGGTGAGCCAAATGGAAACGAAGGAAGCAAAGCGTGTGATGGAGCTCATCGTCTCATACGAACAGCGGGGGATGGAAAAGGGAATCCAACAAGGAATCGAACAGGGGTTAAAGCAAGGGATGAAGCAAGGACTCCAACAAGGAATCGAGGAAGGGAAGCTCGACGTGGTGAAGAGAATGATGGCGAAAGGGTACGATGCCGACACGATCCACGAACTGACCGGGATGCCGATGGAGAAGATTGAAAGGATGAAGGGGTAAGACGGCCCTTCGCCGTCAAGCTCCGCATTGTCGTCGACCTCCAATCGTGCAAAAACCCCTGGGGATCGACGACAATGTTCTTTTGCGCCAAAATCCTACAGCCAACACGGCTGAACGATATTGACAGAATATTTGAAACGTGATATTCTGAAAACAGCCAAAAGGGGAAAAGCTTGATTTTATGCGCATTGTGTGG # Right flank : CCTGTGCCGGTGTACCAAAATATTTGTGTTACCCGTGGTGCTAGTTGAGCGTTAGAACTCAACTAGCCCAAGTGTAACTAGGGAATAGGCTAACAATATGCCGTCGAGCGCTACTTCAAATCCGATCATGGAATTTGCTCGGATCCCTGTGATCCGGTATTGGTCAACCAGAACCGAGAACACCGTCTCGATCACTTTGCGTTTTTGTTGGATCCATTTCTCCTATGCTTCGGACCAGCAATGTTTCTGGTTTTTTCGAGACGGAGTCCAAAGCGCCATTTGGTACTCTTCGTACAGCCTTTTTTGCAACTCACGGCTGATGAATCCTTTGTCCCCAAAGTTATAGGGATGAGGAATTTGAGTCATCACGCTTTCAGCGGCGATACGATCATGGCAGGATGCTTCCGTTACCACATAGCCCATGGGCAACCCTTGATCGGTCACTTGAAGGTGCAGCTTCAACCCATAGTACCATTGCTTTTTGGAAGCGCAATACCCGA # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 6841-7134 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCPV01000070.1 Geobacillus zalihae NBRC 101842, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 6841 30 100.0 35 .............................. TCTCGTTTTGTTTACTGTCATGATTTCTTCCATGA 6906 30 100.0 39 .............................. CTTGTACATATCTTGATTTTTCTCCCTCGATAACTTCGG 6975 30 100.0 37 .............................. CAATTAATTTATTTTCTTCTTTTACGCAAGGAAAAAC 7042 30 100.0 33 .............................. TTTTTGCTTGCGGCGGTCAAGCCAATCTATGAT 7105 30 76.7 0 ............T.C.CA...A.C....C. | ========== ====== ====== ====== ============================== ======================================= ================== 5 30 95.3 36 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : GAAACGTTCGATGGAAGAAAGAAAACGCAATTTTTTGATCCCGATGATGAGGTGTTCCCCCACTTGATTGAATTGAATTTCCGTCATAAATATGAAGCATACTACGGTGTTCCGCCGACGGAAAGGCTATTGATCGAGCCGATTCATGTTCATCATCGTCATCGTGTGGTGACGATGTTCAAGAATATATATATTACAGGATGGCTTGGCTATTACCGCCTCTGTTCTTCGCCAGAACAGTTGACATTTTTATATCATGTTGGTCTAGGTGGCCGAAATTCACAAGGATTTGGCATGTTTCGCCTCAAAAGTGGATAAACGAGTCATGGGATTGTCGTCGACCTCCAATCGTGCAAAAATCCCGGGGGATCGACGACAATGGTTTTTGGTGGTTCAGACTTACAGCCATCGAGGTTGAAGGTTATTGACAGAATTTTTGAAATGTGGTATTCTGAAAACAGCGCTAGATCGAAATGCTTGATGCAACAAGCATTTTTGGG # Right flank : CCTCTTCATCTTCGCGCGCAGGTGTGATGGGGGGCTCGTTGTTGTCGCAGAGTTAGTTCAGACCACATCTCTCATTTGCTTCGTTTGCGGTGATGAAGCATTGTGCGTAACGGATGGGCGCCTGCGGAACAGGCAGTACAGCATTCTAAGTTGGGCAAAGGCATTTCTAGTCTCACGGGTTGCCTTTCTAAGTGACGGGAGAAAAAAATAAGATGGCAGCGATCTATGTTGGCGGCATCTTTCGATCGAGGGAATCCCTTCTGAGCAGGGGATTCTTTTTTTGTGTTTCGTCCTCCGACGTTGTTTTGCGTCGCTCCTTAAAAGGGGGAAGCAACGGAAAAACCAGCTGGAAGAGACGCTCTTTTACTTTCGAGGGCCCTTGTTATTTTCCATTCGCCTTCGTGAAGTTGGGTGGAAAATTCGTTTTTCACCCGTCTCTTCAGTGGGAAAATGTTTGAAATTGTTAAAAATATCCTCCTCTATAATTGAAAAATAGGATA # Questionable array : NO Score: 8.82 # Score Detail : 1:0, 2:3, 3:3, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 16548-18037 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCPV01000070.1 Geobacillus zalihae NBRC 101842, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 16548 30 100.0 34 .............................. AATTCAATGTTAACGTCATCTTGCGAGCGGACAT 16612 30 100.0 36 .............................. ACGGTGATCTTGCCATTATGCTCCTTCAGCGCGTTG 16678 30 100.0 36 .............................. GCTCGTTCATCTCAGAAAATGAAAGACCGGAGCGCT 16744 30 100.0 37 .............................. TAAATTCATGAGAATAAAACCGACTGACACACCAGAC 16811 30 100.0 36 .............................. TTTCTTCGTTGTACTCAACAATCTGATAATAGAGAT 16877 30 100.0 38 .............................. ATCCACACCAAACATAGTCCGCTGTCCGGTTCTCAAAG 16945 30 100.0 35 .............................. TCGGCTTTCGCCTGAAACGTTGCGGAAGATCGATG 17010 30 100.0 36 .............................. AGCAAAAACAAGCTATACAAAAAGTAGCGGAAGAAA 17076 30 100.0 36 .............................. TTTGTTGGTACTGTAAAACCAACCCGTTTACAAAAT 17142 30 100.0 36 .............................. AACTCCGTTCTGTTGAGTTCATCGAGCCAGTAGAAC 17208 30 100.0 35 .............................. CAAGGAAGCTTATTCGTTAACCAATGCAATGAAAT 17273 30 100.0 36 .............................. ACTCCCGCGCCCACCGACAGGCGCTAGGCCTGCCAA 17339 30 100.0 36 .............................. TCGAGCTCGACCAACGTTTTTCCGTTAATCTCAATT 17405 30 100.0 37 .............................. ACAATTTTCGCTTCCACAATAAAGCGTGGTTCTTCAC 17472 30 100.0 38 .............................. ATTTTCATACCATTGTTGCCCTCATAATCGACGTTATA 17540 30 100.0 36 .............................. CTTCTCGCGGTGTACGTACTAGGGTCAAAGGTTTCG 17606 30 100.0 37 .............................. AAAGATTCGTCGGCATTGATCCGTCTTTGCGGACGGG 17673 30 100.0 35 .............................. TCATTTCCAGTTGCTCTGAATGGTAGGCAGCCTCT 17738 30 100.0 38 .............................. TTTTCACGGCTTCATCTAAATAAAGGCGAGACTTTCCG 17806 30 100.0 36 .............................. ATTTCGCTGTGTTTACCGCTGTGGAAATAGCCGATT 17872 30 100.0 40 .............................. GCGACCCTTGGAGCGGCGATCGGCGTTGTACTGACAGTCA 17942 30 100.0 36 .............................. AGCTCATCATACTCCAGTTCGAGTATGTCCCTTCCT 18008 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 23 30 100.0 36 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : AACGCGCTCGTCTTGAGCGTCGAAAAATCGAGCAGGAAATGGTGGAGCGAAAGAGACGCGAGGAAGAAGAACGAGCAAGGCTGGCCCTCCTCTCCCCCGAAGAACGGTTGGTGGCCGAAATTGAACGGTTGACTGACAGCGAAACGGATAGGCAGCGAAGCAAGGATAGCCTTTACCAACAGGTGATCGAGCAGCAAAACAAACAAGCCGCCGTTGCGTTGCAGGCGTATTGGAAACGTATCGGAGAATGGGGAAAAGCCGTCAGCAAAAAGCAAAAGCAAAAAATGGACAAACTTCAACAACTGTTGGAGGAAAAGTGAGGGTCTTGTGATTGTCGTCGACCCCCAATCGTGCAAAAATCCCGGGGGATCGACGACAATGTTTTTTGCGCCAAAAATCCTACAGCCATCACGGCCGAACTGTATTGACAGAATTTTTGAAACGTGATATTCTGGAAACAACCCAAAGGGAAAAAGCTTGATTTGATGCGCATGGTTTGG # Right flank : GCGAATCCTTCCCCTGTGTATCTCCCCAGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //