Array 1 103255-102982 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHZO01000060.1 Gluconobacter japonicus strain LMG 26773 LMG26773_16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 103254 29 100.0 32 ............................. GAGTTCGACGGCAGAACCACGGGCCTCGGATA 103193 29 100.0 32 ............................. ATGCCACCCCAGAGCAGAACTTGAGGCGGGAG 103132 29 100.0 32 ............................. AGCAGGTGAGACGCATCACACCCGTGGATGAT 103071 29 100.0 32 ............................. CGTCCAACAGCCCGAACGATTTTCCGAGCTGC 103010 29 89.7 0 ..............C........A..G.. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 97.9 32 GTGTTCCCCGCACATGCGGGGATGAACCG # Left flank : TGATCGAAGACGTTCTCTCCGCAGGCGGCCTCTCCCCTCCCGAAGCACCGGAAGAAGCCATGCCCGTGGCCTTTGAAGACCCGGAAGGATTGGCCGATGCTGGTCATCGTGGTTGAAAATGCCCCACCACGCCTGCGAGGACGGCTTGCCGTCTGGCTGCTGGAAGTCCGTGCAGGCGTTTATGTCGGAACTTATGGCAGAAAAGTTCGGGAAATGATCTGGCAACAGGTCTGCGCCTATATTGACAGCGGCAATGCCGTCATGGCCTGGGCCGCCCCGAACGACGCTGGATTTGAGTTCGATACCTGCGGTGCAAACAGACGTTGCCCAGTCGATCTCGATGGATTTCGACTGGTCGAATTCGGCCCCGAAGCAGCCCTCCCCCTCCTGCCCGGCCCTCTTAATTCTCCCAACCGAAACAGGCGTTAAAAACCCTTTGAAAATCGGTAGATTTTTGAAGTGGAAAAATTCCTTTCTTAATCATAAACTTGCACACAAGA # Right flank : TCAGAATCAGATCTGTAATACCTGCACAAGCGTTACTACCCTTCCCACATATCCTTGCAGACAAGGAGACGCCCCATGAGCAAACTCACAAAAGAAGAACGGGACAGCCTACCTGACGATGAATTCGGGCTCCCTGAAAAACGGGCCTATCCTGTCGATACCAAGGCACGAGCACGCAATGCGAAAGCCCGCGCTACGCAGGAGCTAGAACGGGGGCTTCTCACACCGGAAGAGCGGGATGAAATTGACCGTGCCGCAGATCGAAAACTGAACGAAGACTAGCCAGAATCAAAAACGGCCCCGGATCACTCCGAGGCCGTTTTCTCTCAACACCTAATCAGTTCGCCTGCGAGGCTCGCAGCGGGGCATCAGCAGGAACATCCTTGAGCGGAATCCCCTGATACTTGCCCGTCAGGGTCTTCAGGAACGCCACGATGTCTGCAACATCCTGGTCGGTAATATCATGATCCGGCGTTTCGTAACGTGCCATGGCACGCACA # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACATGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCATGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 175824-175551 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHZO01000060.1 Gluconobacter japonicus strain LMG 26773 LMG26773_16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 175823 29 100.0 32 ............................. ACGGGCTTTCGTACTACGAAACTGTAACGGCA 175762 29 100.0 32 ............................. CTGGAAACTGCGCAGGCCGCTTTTGCAGAGTA 175701 29 100.0 32 ............................. TCTTGTGTATGCGCTCCAACAAATCCACCCAG 175640 29 100.0 32 ............................. ATGACAGGGGGCGTGTCGCCGTTCCGGGACAA 175579 29 72.4 0 .....T..T........A.....ACT.TC | ========== ====== ====== ====== ============================= ================================ ================== 5 29 94.5 32 GTGTTCCCCGCGTGAGCGGGGATGAACCG # Left flank : CGGGAACTGCGCGTTCCATTCCGGACGGCCCATCACGTTACAGGGCGTCTCGTCGGTCTGGCGGAGCAGCGTGGCTGTGATCTGGCGGACCTGTCTCTTGAAGACATGCAGGTCGTGGAACCGGGCATCAACGCCGGCATTTTCGATGTTCTGACGGTTGAATCCTCCCTGGCGTCCCGCACCAGTCTGGGCGGAACCGCTCCATCCAACGTGCGTCAGCAGGCTCAGGCCTGGCTGGAAAAACTTGGAGACGCTGCATGAAACGTTTTCTGCTTGTTGGCCTGACCCTCGTAGCACTTGGCACCGGCCTGAGCGCGTGCGGAAAGAAAGGGGCTCCTCACGCCCCCGGCCCGGCTTCAGACATCACCTATCCGCGCAGCTATCCGCCTGAATAATGGATGTTCACAGGGGCTTGTGAAGGCTTGAAAAACAGCCTGTAAAAATCGGTAGATTTTCAGGAATGGAAATTCCCTTTCTGTATCAGTATGTTGTCAGGAAGA # Right flank : CGCTTGAAACGCTACGCCGCTTTTTCAATCTCAGACATAACAGGGGTATGGCCGCTCCCGGCGAGCGGCTACGATCAGCTATCCCCCAGCGCTTTGACCACTAGTGGGTGTTGCAGCACATTTTGTGCAGACCACCCCAGCGCACGGAGGACACGTATCCCTTCTGCGCCGTCACGTTTGGAGAGCTTTTTTCCCTCCTCATCCAGAATGAGGGCATGGTGCCTGTAATCAGGTTCAGGCCATTTCATCAGAGCCTGAAGCACACGATGAACGGATGTGGCAGCGTAAAGGTCCTGTCCTCTTGTGACGCAGGTTACGCCTTGTAGGGCGTCATCATGGGTCACGCACAGATGGTAAGACACACCTGTGTCTCTGCGCCCCAGAACGATATCGCCAAATTCTTCAGCGCGCCCCGCAATCCGTCCCTGCCCGACTTCATACCAGGACGGCACACCGTGGATTTCATTCAGGGCCCGCTCCATGTCGAGCCGCCAAACCGG # Questionable array : NO Score: 5.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 69036-68701 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHZO01000064.1 Gluconobacter japonicus strain LMG 26773 LMG26773_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 69035 29 100.0 32 ............................. GCCCGGTCGCCTATGCAATTTCCATCATTGCA 68974 29 100.0 32 ............................. TACCCTGAGACGTACCGGAATTAATAGCCATG 68913 29 100.0 32 ............................. CCCTGACAAACGGGCAGCTTTCCGGGGTGATC 68852 29 100.0 32 ............................. TGGGACGACGGCACGATCGGACGCCCGGTGAT 68791 29 93.1 32 ........................G.A.. GCTGCCTGGACCTATCTGACCCGCGACCGGGC 68730 29 93.1 0 ...........................TT | G [68704] ========== ====== ====== ====== ============================= ================================ ================== 6 29 97.7 32 GTGTTCCCCGCACACGCGGGGATGAACCG # Left flank : GTAACCGTTCCCGGTTATACCGGAGCGCTGCTTCCTGCAGGACGCGGATCATGGGAACCATGTGGTTACCCATGTCCCTGATGCCTGCGAGTTCCCGATTGCTGGCGGAAAGCAGGGTTGCCACCGAACCAAAGCGTTCCAGAAGTGCTGGAACGAGGGTGTCCACTTTTTCTTTACGGCCCGTAAAAATCTGAACGATCAGGAGTAACAGAGTGTCATCGTCCAGGCGCCGTCCCCGCCCGCTCAGAAGGGCAACAGGGGGCGGAATATGCTCGTTGTTTGTCGGCTGTGGGTTGATGGAAAATGGTGCGGTTTGGAAAAGGATTTTTCCTGAGTATTCAGCAAACCCATCATCAGAGGCCGGAGCATTAGTCATTTGTTTTTCTGGCACTGTAAGGCGAAGAAGATCAAGGTAGCACCGGCCCTCAAAAAAGCTTAAAAAATCGGTAGATTTTTCGAGGGCTGTTTTTCCTTTGGAAAACAGCTATCTAACAGGAAGA # Right flank : ACAGGAGGCCTTCCTGTCTGAGGCTGCTGAGAGTTGTTGTTTTGGTGCTGATAAGGACATCATGCAGAACAATGGAGAGTGGTCTGAGAGCATTTTCCAGTGTTCGTGCGGCTGTTGAGAGGGCTGGTGCTCTCAGGGCGGGCTGGACGTGTACGCCGATGATGGCTGTAGCGTGCAGAGCCAGGGCGCGAATGGCGATGGCGCGGTTCAGGAAAGTGATATCTTCCTCTTCGGGGGCAGCTTCATCAGCGAGGAGCCGGTTGCGGTTATCCAGATAGAGGATGCGAAGTTGTCCGGCGACTGCGCCTTTCAATGTCGTTTGAAGGTAGTCTGTCAGTTGTGGCCAGTTCCCCAGAACCGGACGCTCACGGTTTTCAGCGGAAGCAAGGCGTTCTGCGGCGACTGATGGCAGACGAAGGGCGCGGATGGTATCGTCGTTCAGGCCGGCATTTCGTAGATCGCGCGTTGGAGCACGGAAGACGTTGATGAGACTTCCGAAG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCACACGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //