Array 1 31-2584 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBNY01000081.1 Jejuia pallidilutea strain 11shioA1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== ============================== ================== 31 46 100.0 30 .............................................. AGAGCAGGGCGCAACCGTAACAGATGACGA 107 46 100.0 30 .............................................. TGATGATGCTACTGATGTTTTTGAATTGTT 183 46 100.0 30 .............................................. TAGGTAACGAATTATAGAGTTGTCTCTTAT 259 46 100.0 30 .............................................. ATAATCGGCATTAAGTCCGTAACCGCCTGT 335 46 100.0 30 .............................................. AACAGAGTTGCCATTTATTTGGTTGTGTAG 411 46 100.0 30 .............................................. AGCTATTGAACCACTTCCTAAATGCGTATC 487 46 100.0 30 .............................................. TGTAACAGTAAATCCTTTACTTGTAATTGA 563 46 100.0 30 .............................................. GCATTAGTACATTTATTAATGTGATTTCGC 639 46 100.0 30 .............................................. ATGCAATAGCCCTTACCTTTGCTAGAACAG 715 46 100.0 30 .............................................. AATATTTAACAAAACTGTAACACTAGAGCA 791 46 100.0 30 .............................................. TAATGGTGGTGCTTTTGTCGATAGGGCTTT 867 46 100.0 30 .............................................. AATTACTTATTACTTCAGACGAAGATTACC 943 46 100.0 30 .............................................. AAACTACTGTGTATTCATCAGCAGGATTTT 1019 46 100.0 30 .............................................. CAATGTTCAAATATGAAGAAGCTTAAATTC 1095 46 100.0 30 .............................................. CTGGTATTTTAGATTTATTTTGCATCCAAA 1171 46 100.0 30 .............................................. TAACTTTAACAACGGTACTATTACGGGCGA 1247 46 100.0 30 .............................................. ACTACCAACCAACACAAGACCAGCCAATTA 1323 46 100.0 30 .............................................. AGAGCGTACAAAAGCGCATTATGAGTTCTT 1399 46 100.0 30 .............................................. ATTTTTTGTTTGCTTTATTATGCGATGTTT 1475 46 100.0 30 .............................................. AACTCTATATCCTTAACATTATCCATTTCA 1551 46 100.0 30 .............................................. TTATTTCATTGGTGAGAAAAATTAAGTCGT 1627 46 100.0 30 .............................................. TAAGAACGAAACTGCAACAGGACGATTTAT 1703 46 100.0 30 .............................................. AACAAAAGACGAAAGGCGCATTAAAGTACG 1779 46 100.0 30 .............................................. AAAACGGAGCTAGAATAGACGGAACCTCTA 1855 46 100.0 30 .............................................. CTCGGTTGCATAAATAGATCTCACTCAATT 1931 46 100.0 30 .............................................. ACACATCGCGAGAACTACACAAGTGATGCG 2007 46 100.0 30 .............................................. TTAGGTAACGAATTATAGAGTTATCTCTTA 2083 46 100.0 30 .............................................. CATATCCCTCAACCATAATTTTGGATTTAA 2159 46 100.0 30 .............................................. TACACTATTAAATACATTGGTGAACACTCG 2235 46 100.0 30 .............................................. CAGCACCAGAATAAGCTAAATCTTTGTTTA 2311 46 100.0 30 .............................................. ACGGCTTCAATTTTTATACTAACCGTTGTA 2387 46 100.0 30 .............................................. TTTTCGTTTGAAATTTTAGCACCTTTAGAT 2463 46 100.0 30 .............................................. AAACTGAATTATATTTAGGTTGAGATGGTA 2539 46 100.0 0 .............................................. | ========== ====== ====== ====== ============================================== ============================== ================== 34 46 100.0 30 GTTGTGAATTGCTTTCAGTTCTTTAAATTTATGGAGAATTCACAGG # Left flank : TTACTACTAAAAAACCTTTGTTTTTTTGCTG # Right flank : GATGCTTGCTGTAATAGGCTGGCATCCTGTTTTTTATGGTATGGTTTAGGATTTTAAGAATTTGTGGTTCAAATGGACTAAGGCTGCGTTCTGTCTTACATTTTAAATTCTAGATATAATCGTGAGATGCTGAATCAAGTTCAGCATCACAGAGTGTGTTTAAAAAAGTTCTAGTTGTTGCGATGGTGCTTCTAAATTGGCTTCTTTTTGGCCATGAAACAATTCCATCATTCCAAATTGTTTATCGGTAATTTGCATGATACAGACTTTTCCTTTTTTTGGCAACGCCCTTTTGGTCCGTTTAATGTGTACTGTGGCATTTTCGCGACTGGGGCAAAACCTGCTATAGATACTAAACTGAAACATGCCAAAACCATCATCTAATAAATTTTTTCTAAACCGCGTTGCGGCTTTTCGTTCCGTTAAGGTTTCCGTAGGCAAATCAAAAAATACAAGCACCCACATACACCTATATTGGTTTAATCGTGTTAAATAAGATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAGTTCTTTAAATTTATGGAGAATTCACAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.39%AT] # Reference repeat match prediction: F [matched GTTGTGAATTGCTTTCAGTTCTTTAAATTTATGGATGATTCACAGG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.40,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 120-488 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBNY01000080.1 Jejuia pallidilutea strain 11shioA1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== =========================================================================================================================== ================== 120 46 89.1 123 ...T.T.T.A.G.................................. AAAAAAGCATCATAAAAATTATAATATGTGTTGTGAATTGCTTTAGCTGCGCTGAACCTCGTAGCTAATGTATGTGCTTTACTAAAGTTGTTTATACGTGCTAATAGCTTTTTAAACCCTAAG C [128] 290 46 89.1 30 ...T.T.T.A.G.................................. AACAAATATATAGAGTAATTCTCTAATTAT C [298] 367 46 100.0 30 .............................................. ATAGACGAGGGGTTTATTATGTGGTTCTTT 443 46 100.0 0 .............................................. | ========== ====== ====== ====== ============================================== =========================================================================================================================== ================== 4 46 94.5 61 GTTGTGAATTGCTTTCAGTTCTTTAAATTTATGGAGAATTCACAGG # Left flank : CTCCATCTGGTGGATTTGTGCCGCTGTTGTGAATTGCTTTAGCTGCGCTGAACCTCGTAGCTAATGTATGTGCTTTACTAAAGTTGTTTATACGCGCTAATAGCTTTTTAAACCCTAAGG # Right flank : AACAAATATATAGAGTAATTCTCTAATTATGTTGTGAATTGCTTTCAGTTCTTTAAATTT # Questionable array : NO Score: 2.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:-3, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAGTTCTTTAAATTTATGGAGAATTCACAGG # Alternate repeat : GTTTTTATTAGGTTTCAGTTCTTTAAATTTATGGAGAATTCACAGGA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: F [matched GTTGTGAATTGCTTTCAGTTCTTTAAATTTATGGATGATTCACAGG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.40,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.68 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //