Array 1 1-7049 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGFVR010000004.1 Kocuria rhizophila strain 28R2A-13 4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1 28 100.0 33 ............................ CGCCGGGAGCATCCCAGGCCGGGAGGTCACGGA 62 28 100.0 33 ............................ CTGGTCCCAGGACCGGGCTAACCAGCAGAAGAT 123 28 100.0 33 ............................ CGCCATGTTCGTGATCTTCAGCTACGGCATGAT 184 28 100.0 33 ............................ CGGTCCCGCCGGGAATGGGCGCGCCGCGACTAC 245 28 100.0 33 ............................ CGCCAACAGGCCACCACCAAGCCCCACAACCAG 306 28 100.0 33 ............................ GTGAGAAGGAGAACTAACAATGCGACAGATCAA 367 28 100.0 33 ............................ GTGAATGGGTATCCGACCGCTACGGGAGGGAAT 428 28 100.0 33 ............................ GTGAGAAGGAGAACTAACAATGCGACAGATCAA 489 28 100.0 33 ............................ CACGTGAACCTCACCCCCGACCAGGCGGAAACC 550 28 100.0 34 ............................ CCACCCCGTACACCGCGTCCTTGTACTGCGGGAA 612 28 100.0 33 ............................ CACCCTCCCCGGTGAAGCGGAAATCGAAGTTGC 673 28 100.0 33 ............................ TTGCTCTCCTGTTGGCCCCAGCAAGAATGTGGG 734 28 100.0 33 ............................ TGCCCCACGTGCGGCCGGTGGTGGAAGTACGGG 795 28 100.0 33 ............................ TTCCCGGCCCGTCTTGGCGAGCTGAACGATCAG 856 28 100.0 33 ............................ CGCCTCACCGCCCTGCGAGATGGACGACAAGAA 917 28 100.0 33 ............................ ACAATGATCGGGGCGTTCGCGTTAACTGCCGCG 978 28 100.0 33 ............................ CTGGCATGGAAAGGCACCCTCACCGACCGGGAA 1039 28 100.0 33 ............................ ACGGCACGTAATACGCCGGGTTCGAGTTCCTCT 1100 28 100.0 33 ............................ GGACGGGGCCCCCGCCGCCGGCGTCGATGAGCT 1161 28 100.0 33 ............................ CGTCGGATCGTGCCCAGTGGGTGCAGGCGGGGC 1222 28 100.0 33 ............................ ACCTGGAAGGTAACCAGCCACCTAGGGTCACGC 1283 28 100.0 33 ............................ CGTTCAACCCGGTCACCGCCCCCGAGCAGTGGC 1344 28 100.0 33 ............................ CCTCGTGCCGGCGGTCATCCGTGCACTCCGGCA 1405 28 100.0 33 ............................ GGCAGACAAGGCAACCACGCCCACCACGGCTGA 1466 28 100.0 33 ............................ CTCCACCTGCCCGCCCTGGTTGTGCTGCCCGAA 1527 28 100.0 33 ............................ GCGTGCGGAGGGCGATGCCCGGGAGCCGGATTC 1588 28 100.0 33 ............................ CCGCTGATCAACTCCCCCCGGTACATGGCACGG 1649 28 100.0 33 ............................ CGCGGCCTTCAGACGCCGGGCGTCGTCACGGAC 1710 28 100.0 33 ............................ CCCGCATGGTTGGTGGACCGGGGTTCACAGAAC 1771 28 100.0 33 ............................ CGCCCTGGCCGGAAGATCCTCGTGTACTCGGGG 1832 28 100.0 33 ............................ ACCGAAAACCTGCCCAGACGGGGCAGTGATCTC 1893 28 100.0 33 ............................ GTTGACCGCGACAGCGGCGTCGGCACCGTTGGT 1954 28 100.0 33 ............................ CACGCTGGTCGTGGTGAGCCGCACCATCACCTC 2015 28 100.0 33 ............................ GTGGCACACGGACGTGCTCATGACCCACACGGA 2076 28 100.0 33 ............................ CGGTGGCCCGGTGATGTCGGTGCAGATCGACGG 2137 28 100.0 33 ............................ ACGGTGTCGTTCTAGACCCGGGGCGTGTGGTGG 2198 28 100.0 33 ............................ CGATTTTCACCTGGTTGTACGTGAACGTCATCC 2259 28 100.0 33 ............................ CCCACCACATAACCGAGAGACAAGGACAGGAAC 2320 28 100.0 34 ............................ CGTGCCCGCCTGGTTGGACACCACCCTCGCCGAA 2382 28 100.0 34 ............................ TCGTTGCCATGAGTCAGTCTCCTTAGAAGGCAGT 2444 28 100.0 33 ............................ CCGGGTGCAGGGCAACCAGAATCCCATGCATTA 2505 28 100.0 33 ............................ GCCATCCTCGAGTGAGCCGGTGACGTGGTGCAG 2566 28 100.0 33 ............................ CGCGGCGTTCGGTGCGATCCAGACTGTGGTGGG 2627 28 100.0 33 ............................ GTCCTCCGCGTCCACGGCGGCGTCGGAGTCGAA 2688 28 100.0 33 ............................ GGGGGGTCGGTCGCCGTGGCAGCAAGAGGAGTT 2749 28 100.0 33 ............................ GTCGCGGAATGTGCACGGGAGACCGATGGAACT 2810 28 100.0 33 ............................ GAAGAAGCCCACGATGGCCGGGACCCGATCCTG 2871 28 100.0 33 ............................ GCCGTTGCCGCATGTCAGCGACCGGCATCGCGT 2932 28 100.0 33 ............................ GCGTGGTCCAACAACTCACGGCCCTACGCGGGG 2993 28 100.0 33 ............................ TCCCTGGGGCCAGGACCCCTGAACCTCCACCCG 3054 28 100.0 33 ............................ GCTCGCGCTCGTGTCCACAGGTGTCGCATCTCT 3115 28 100.0 33 ............................ CGCCTCGATCACGAACGCCTTGCGGTCCTGCAG 3176 28 100.0 33 ............................ CTTCTGGGCTCAGGCCGCTGATCCGATCCGCGA 3237 28 100.0 33 ............................ CGTCCCCGACGCGAGGTCCAGACCCGCCGGCAC 3298 28 100.0 33 ............................ CCCCACCCTGGGCGGGGTCATTCAGGGCGGCGA 3359 28 100.0 33 ............................ GATGCGGGAGTTCTACGGCTTCTCCTGAGTTTC 3420 28 100.0 33 ............................ CTCGGGTGGTGGGACCGCGCAGTGGGGTGTGTA 3481 28 100.0 33 ............................ CCGAACCCGCCCAGTGTTGAACGAGGTCTGCGC 3542 28 100.0 33 ............................ CATGACCACCAGCATGGACCGCGCTATCCCGAA 3603 28 100.0 33 ............................ CCGTCCCCACAGGGGCGTCCCACACCCCAGACA 3664 28 100.0 33 ............................ CGGGTCACACGGTTCGCGCTGATCTGCAGGTTC 3725 28 100.0 33 ............................ GCCTCGAAGGCTTCCGGGTTCTCCTTGTGGGCT 3786 28 100.0 33 ............................ GGTCCACCGAGGAGATCACTTGGTGCGACATGG 3847 28 100.0 33 ............................ GGGTCACCTTCATCTCCGTCTCCGTGATGCTTG 3908 28 100.0 33 ............................ CTCGGGTGGTGGGACCGCGCAGTGGGGTGTGTA 3969 28 100.0 33 ............................ CTTCACCCCGTCACCCGCCTCACGTGCACCTCG 4030 28 100.0 33 ............................ CCGACGCCGAGCTCTTCGCCAGCAGACACGGCC 4091 28 100.0 33 ............................ CGGGGTCTCGTGGACGATCGGGAGGAGCCCCCC 4152 28 100.0 33 ............................ CTGATGGGCTCCTTCACGGCATCCTTCAGCTTG 4213 28 100.0 33 ............................ CGCCGGGAACGTCGAGGCATGGCCCAAGTTCGT 4274 28 100.0 33 ............................ GGAGACCTCCGCGGATCATGAACGTATCCGCGA 4335 28 100.0 33 ............................ GGCGGGCACGGCGCAGGCGGCGGCGGACGGGAA 4396 28 100.0 33 ............................ GTTGCTCGCCCTGTCTGGGAGGAACCCGTCATG 4457 28 100.0 33 ............................ CTTCTTGGGGTCCTTGCCAGCGGCGATGTAGTT 4518 28 100.0 33 ............................ GCACTTCGGGGGGCTGGGCATCTCTGGCCAGGA 4579 28 100.0 33 ............................ CGCGGACGCCAGATCGAGGGCGTACCCCGTGAC 4640 28 100.0 33 ............................ GATCCTTCTCCGCCTGAGCAATCGCCTCCCGAC 4701 28 100.0 33 ............................ GCTCCCCAACACGGCCCTGGTGTTGGCTGTGCA 4762 28 100.0 33 ............................ CCCCGTGTCCACCAGCCACGACGGCTTCCCGAA 4823 28 100.0 33 ............................ AACGATGCGGGGTCGGCGTCTCGGGCGATCAAC 4884 28 100.0 33 ............................ CCGCCACCGCACACGAGACTGCTCACGGTCGGC 4945 28 100.0 33 ............................ CGGCAACTCCACCTCCGTGACGATCCACAGGTC 5006 28 100.0 33 ............................ GACACCATCGCCCGGTGGATCAACCCCGCCACC 5067 28 100.0 33 ............................ CCACGAAGGAGAACTGACCATGGCAGCACAGGC 5128 28 100.0 33 ............................ GGAGAACTTCGCGGAGGGCTTCTTCCGGTCCGT 5189 28 100.0 33 ............................ GTTGCCCGGCACACGGGCGGTCTTCACGGTGCC 5250 28 100.0 33 ............................ GGGCGCGGGGCACAAGGCGCGTGCGGCGACTGT 5311 28 100.0 33 ............................ TCGGCTGATGGCCGTCGACAGGTTCGCGAGCGC 5372 28 100.0 33 ............................ GCCCTGCCAGCGCATCGACGTCGCCGACGAGGC 5433 28 100.0 33 ............................ GTGGGAGCCCTCCGCGTCGAACTGGGCGCGGGT 5494 28 100.0 33 ............................ CAACCCGCCGCGAAGTCCCACGAGCGGGCTGAG 5555 28 100.0 33 ............................ GCCCAGCGCGTTCGTCGTGCTGCTGGCGCTAGC 5616 28 100.0 33 ............................ GCCCAGCGCGTTCGTCGTGCTGCTGGCGCTAGC 5677 28 100.0 33 ............................ CGTGGACGCCGAGCCCGAAGACCTCGAGGAGTT 5738 28 100.0 33 ............................ GGCGGCCTCGGTGGTCATGACCACGGGCGCGGT 5799 28 100.0 33 ............................ GATCAACGACTTCTGGAAGGGCGACGACATCAA 5860 28 100.0 33 ............................ CGCGTCCTTCAGCAGTCCCAAACCGGCCTTGAA 5921 28 100.0 33 ............................ GGCGGGGATGGACAAGCCTGGTGGGGGTCTGCC 5982 28 100.0 33 ............................ CGGTCACGGGCTTCTTGCGGTACGTCTTGGGTT 6043 28 96.4 33 .G.......................... GCGGTGGACGGGCAGGTGCAGCTGCAGCTGCCG 6104 28 100.0 33 ............................ CCGCAGGGCAACCTGGTCGTTCTCGGCCAGGCT 6165 28 100.0 33 ............................ TGCCCCGGATGCGGCGGGCGGGGTCCCTGGCCC 6226 28 100.0 33 ............................ CTGGTCAGAGAGCGGAGATACGAGGATCACGGT 6287 28 100.0 33 ............................ CGAGCGGAACTCGGCGGCGGCTTCCAGCGGCGA 6348 28 100.0 33 ............................ GTCCGTGGCGCCGTGCAGCGCCCCGCCCTGGAA 6409 28 100.0 34 ............................ CGCCCTACCCACCTCGGGGCGGGACAGCGCTGCG 6471 28 100.0 33 ............................ GACGGTGCTCTCCAACACCTAGGCCGGGATTAA 6532 28 100.0 33 ............................ CCCGCCCCGGTCCACGATGCCCTGCCCCAGGCC 6593 28 100.0 33 ............................ GCTCGGCCCCGGCGTCCTCACCATCGGGGACAG 6654 28 100.0 33 ............................ CTTCCGGGCTTCCTCCAGGGTCTCCCACTCGGT 6715 28 100.0 33 ............................ CGGAGCGCCGGGGGACTCACAGAACTCGAACGC 6776 28 100.0 33 ............................ CCTCCCCTCCCTGCCCCGCGGCAAGAGTTCAAA 6837 28 100.0 33 ............................ CCGTTGCCGGTCACGTTCCGTCAACGGCTCCCC 6898 28 100.0 33 ............................ GAGACCACCGCCGCGCTCGCGGCGATCCGCCCG 6959 28 100.0 34 ............................ CGGCGGGGGCGGTTTCGGCTTGGCCGTCGAGCTG 7021 28 89.3 0 .....................T...A.A | C [7044] ========== ====== ====== ====== ============================ ================================== ================== 116 28 99.9 33 GTGCTCCCCGCGCCTGCGGGGATGAGCC # Left flank : | # Right flank : ACGGCCGGGACAAAACGGCGAGTTCCTCTTCCATTTAGTTGTGGACAACTAAAAATTGCACAACTATAATCAGTCGCGGTCGGGTCGCGTGGCACCCGCCCTGGTCTTGCCAGCCGAGCATCCAGGGTGGCCAGTAACGAGGGGCAGCGAAAAATCTGCACCCGTTTGCGGCATCGATGTCGGCGGGTCTCGGCACTTGGGGGGTCGAGGCCCGTCAGGATCACCAGTGAAAAGGAGTCGTCATGAACGTTCTGCACACCTCCGGTCGTCCTTTCCGGCGCAGTGCGCGGGCGGAAAACCCCGCCGCGCTCTCCCCCGCCCGCCACATCGTCCGCACGGCCCTCGGCGGCTTCCTGGCCTTCGCCGGCGTCAGCCACCTGACCTTCGCCCGTGACGAGTTCCAGGCCCAGGTTCCGAACTTCGTGCCCCTGGACACGGACGTCACCGTCCTCGCGTCCGGTGTGGTGGAGATTGCGCTGGGTGCCTCGCTGATCGCCGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCCTGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //