Array 1 63318-62617 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBBX01000128.1 Escherichia coli strain Win2013_WWKa_ALT_23 Cont128, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 63317 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 63256 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 63195 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 63134 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 63073 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 63012 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 62951 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 62890 29 100.0 32 ............................. ACCTGGAGGCGAAAAAGGCGCTTCGACGTAAA 62829 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 62767 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 62706 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 62645 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 12 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 80510-78834 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBBX01000128.1 Escherichia coli strain Win2013_WWKa_ALT_23 Cont128, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 80509 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 80448 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 80387 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 80326 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 80265 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 80204 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 80143 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 80082 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 80021 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 79960 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 79899 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 79838 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 79777 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 79716 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 79655 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 79594 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 79533 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 79472 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 79411 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 79350 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 79289 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 79228 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 79167 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 79106 29 100.0 32 ............................. CCTAGCCCGATTATCGGCATGAGCGATGCGGA 79045 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 78984 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 78923 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 78862 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 28 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //