Array 1 2346-34 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJOC01000050.1 Halomonas halmophila strain NBRC 15537 sequence50, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2345 28 100.0 32 ............................ AGTTCGTGATGACACTCGGGGCAAAGTGCTGC 2285 28 100.0 32 ............................ TGACCCACAAAAAGAAAGCGCTCCCCCATCCA 2225 28 100.0 32 ............................ TCGTCGATTTTGCCCAGTTCGCTGGACGGCCC 2165 28 100.0 32 ............................ ACGCCATCATGCTGCATGATGCAGGTCTTCTT 2105 28 100.0 32 ............................ GCCGCATCGCTTCACGAAGCTGGTTCTGGATC 2045 28 100.0 32 ............................ GACGATGCCGTGCAGGCCGTCGAGCGCGTCAC 1985 28 100.0 32 ............................ TCGCGCATCTGATCGGGCCGGATCATCTCGGG 1925 28 100.0 32 ............................ ATGACCTTGGCGACGCGGGCGCTTTCGCCGCC 1865 28 100.0 32 ............................ AGACCGTGCAGCGTGGCCAGCCCGCTATTAAC 1805 28 100.0 32 ............................ CATCGGCGCCCGGCGCCCTGCTATTGACCTCC 1745 28 100.0 32 ............................ TGTGTTGAGCGCGAATCGTCGATTACCCTCAA 1685 28 100.0 32 ............................ TACTCCGGCGTCATCGCCCACTGGCACGACCC 1625 28 100.0 32 ............................ AAAGCCAGCGAGCTCTGGGCATGGTTCCAGAG 1565 28 100.0 32 ............................ AGCGCACGACCAATGCCGCTGTCTTCGGGCGT 1505 28 100.0 32 ............................ ATGTCTCCGATAACGGGCATCAAAGTCACGCC 1445 28 100.0 32 ............................ TGCGCTTCGTCATCTGTGGTGTTCGGCCCATC 1385 28 100.0 32 ............................ AGGTAGCGGTGGACTTCGCCGGGATCGATGCC 1325 28 100.0 33 ............................ ACTGACGCATGTAGTCACGTGCTGCGTCAGCAT 1264 28 100.0 32 ............................ GACGAAGCCTACGAAGAGTGGGAGTGCTACTG 1204 28 100.0 32 ............................ ACGATCCGCGAGCGGCTGAAAGAACTTCAACG 1144 28 100.0 32 ............................ ACTTCGGTATCTGTTACGAGATTGACGGTCGG 1084 28 100.0 32 ............................ TGCACGAGATCGACCCGGAGACGTTGGCGGAA 1024 28 100.0 32 ............................ AAGGACACAGCCCAGCTGTTTGAGGTGGTGCA 964 28 100.0 32 ............................ ACGATCATTCACTGGTGCGCGCAAGTTGCGAG 904 28 100.0 33 ............................ ACTACCAACAAGCGAAGCGAGGCGAATGATGCT 843 28 100.0 33 ............................ CGCTATGCGATGACACCCCGGGAAATGATCGAC 782 28 100.0 32 ............................ TTGCTGAAGCCATGGACTTTGTGTGTATCGCG 722 28 100.0 32 ............................ TGATGAAGTTCGAGCGGGCTTCCGATGTCAGG 662 28 100.0 32 ............................ TGATCGAGCGCCCATGCCCAGCGTGTCGTGTC 602 28 100.0 32 ............................ TGTACAGCAGGCACTGGACGACACCCCGGAGC 542 28 100.0 32 ............................ GAACCGATCCGGCGGCGTGATTGTCACCGTAC 482 28 100.0 32 ............................ ATGAACAGCAGCCGCCTTTGCCCCGCCACCGA 422 28 100.0 32 ............................ TGGCATAGCTACTGCAAGGCGATTGTGGAGCG 362 28 100.0 32 ............................ GCGACCCTGGGTGACGGGCTCACGGGAAGCAT 302 28 100.0 32 ............................ GAACCCGCCTGCGCCAGCACCTGCCCCGGCAC 242 28 100.0 32 ............................ CTGTAGTAAGCACGAAGACCAGTGGTGATGTC 182 28 100.0 32 ............................ ATGCACCAAAGCGCGATGGCCGCCCACTCCCA 122 28 100.0 33 ............................ CGGCTCTGGCTGCCCAGTGGACCAGGCCATGCT 61 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 39 28 100.0 32 GTTCGCTGCCGCCCAGGCAGCTCAGAAA # Left flank : CCGACTTGAACAGCTGATGGCGCTCCCGTGGCTGGCGGGTATGCGAGACCACGTAGAGTTGGCGGACATTGCGCCGATTCCGGCGGAAGCGCGCCACTGTCACGTGTTTCGGCGTCAGTTCAACACTGGGGGGCCCAGCCGGGTCAAGCGTTATGCTCTTCGTCACGACATCAGCGAAGAGGAGGCTCGCCAATGCATGTCGAAACCCGCTGAGCGCAAGATTCCACTACCATTCGTGCAAGTGAACAGCCGCTCTAGCGGGCAACGTTTTGCGTTGTTCATTGAGCATGGAGCGCTGCAGTCGGAGCCAGTAACAGGGAGTTTCAACCACTATGGTCTTAGCCGCCAGGCAACGGTGCCATGGTTTTGACCCTTTTTGCACCATCTACTAGCACCTCTATATAAATCAATGGGTTAGCGCCATGCCCTAAAAAAGGGTATGGCGCTTTACTTTTCCTGTAGCTCTTTAACAATCAACTAGTTACCTGTGGTAAACTCTA # Right flank : ACGTCACCGGCTGGATGCCGGCGGCGCGAACGGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCCCAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCCCAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [11.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 33-661 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJOC01000086.1 Halomonas halmophila strain NBRC 15537 sequence86, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 33 28 100.0 32 ............................ AAGCGGTGGTTGCCACCGAAACTGTCGAAGCA 93 28 100.0 32 ............................ TCGTCGATGCTCATGGCTTCAGTGAGGTAGTC 153 28 100.0 33 ............................ ACCGTGCTGGGTGTGGGTGTGTGTTGCCCTGGT 214 28 100.0 32 ............................ TGCGACGCGATCAGTTTGGCCCGGCCCTGGGC 274 28 100.0 32 ............................ ACGAACGGCGTTGAACTGGCTGATGCCGTTGT 334 28 100.0 32 ............................ GTGAGGCGCCGGAGCCCTATATGCCACGCATC 394 28 100.0 32 ............................ CGCTATCTACGGTGATGCCCTGCTCGCCCTGG 454 28 100.0 32 ............................ ATCTCCATCGACTGGCGGTCTAGTGTGCTCTC 514 28 100.0 32 ............................ GCCGAGGACCGCGAGCGCATCATGCAAACCGT 574 28 100.0 32 ............................ TCAATCCTTCTGTCTCCGTGGACGTGAGGTCA 634 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 11 28 100.0 32 GTTCGCTGCCGCCCAGGCAGCTCAGAAA # Left flank : TAAATGCATAATCGTAAATGTAAACGACAATTG # Right flank : ATCTTGCCGATCTCGCGGGAGAGCATGGTCTGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCCCAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCGCTGCCGCCCAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [40.0-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //