Array 1 121471-120973 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOWN01000004.1 Halolactibacillus alkaliphilus strain CGMCC 1.6843, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 121470 36 100.0 30 .................................... TAACTGTGATTTGGTTAAAGCATCAAAGGA 121404 36 100.0 30 .................................... CTCTGTAGCAACACCTTTTCCTTGGAATGT 121338 36 100.0 30 .................................... ACTTGGAAATACAGCTATTGATCTTCACAT 121272 36 100.0 30 .................................... AGTATAACAAAGACCAAGTGGAGCATTTAA 121206 36 100.0 30 .................................... AAGAAGAATAAAGATTTAATAAAAGCGAGA 121140 36 100.0 30 .................................... TTTTGGTAATCCTTCTGATTTTTTTCAAGT 121074 36 100.0 30 .................................... AGTTAATTATGCACGATACATGCTCGTCTT 121008 36 97.2 0 ...................................T | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 99.7 30 GTTTTAGAGCTGTGTTGAATTGAATGATTCCAAAAC # Left flank : ATGGTCAAAACAGAATTAGAAAAGCTGATGATGTCCATTAATGACATCATCAGCGATCAATTACTAGAGCATGACTTAGATATTCAAACAACAGATATTACTTTTCCAGCATTATTTAAAGCCTTAAATATAAAAATCAATAATCAAGCGGCATCCATTAATGATAAAATCGCAGATATCATTCAACTATTTAAATATCAATCAAGAAAAAAGCTATTGGTCTTAGTTAATGCATGCTCATATTTAACAAAAGATCAAGTAGAGGAAACGCGTAATTATTTATCACTAAATAATGTTACCGCACTGTTTATTGAACCTAGAACGGTGAAAGGTTTTTGGCAATATATATTAGATGAAGACTATTATCTTACTTATGAAAATGTGCTATAATTGTAAAAAATGGGCCTTGAAAATTTAATATGCAAAAATAAAACATTCAATTCTGAAGTCTTGCCATGGGCGAATAGCGCGATTACGAGATCTCAATTTTATTCTACGAG # Right flank : AAAAGTTTCAAAAAAGGGGAGGGGGAGTAGTATGCGTATAATTATTTCACCAGCAAAGAAAATGAAAATTGATACTGATGCATTTACGTATGAACAATTTCCGCAATTTCTTGAACAAACGAAAGAATTGTTAGCGCATTTACAAACACTTAGTTATGATGAGTTAAAAAAGATCTGGAAAGCTAGTGATAAAATATCGACAGAAAATTATGAACGCATTCAACATATGGATTTAGAATCAAATCTAACACCGGCGATTTTATCGTATGAAGGTATTCAATATCAACATATGGGGCCAGGTGTGTTTGAGCAGCAACAATTCGATTACTTACAAGAGCATTTGAGGATTCTGTCGGGGTTTTATGGTGTTTTAAGGCCATTTGACGGCGTGACGCCATATCGGCTTGAAATGCAAGCAAAACTGCATGACGATACATATAAATCAGTGTATCATTTTTGGTCTGATCAATTAGCAAAACAGTTATTTAGTGAGACAGATA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGAATTGAATGATTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGATTTGAATGGTTACAAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.60,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 20112-20670 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOWN01000005.1 Halolactibacillus alkaliphilus strain CGMCC 1.6843, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 20112 31 100.0 36 ............................... CCAGTCGGCATTGACATGGAACCTTTGCACCCTAAG 20179 31 100.0 35 ............................... ATATATATCACTCCTTATAATTTTAAGAAATAAAG 20245 31 100.0 35 ............................... TTCACCTTTACACTTTGGACAAATAACTTCCCTTG 20311 31 100.0 35 ............................... TATTTTCATCGCTAAAATCAATGTGATATTCTTTG 20377 31 100.0 36 ............................... TTAGTTTCACCGTTTACCTCTTTTTCCGTTATCTCG 20444 31 100.0 35 ............................... AATCAAAAAACCATTTAAAGATTATTTTGTTAGAG 20510 31 100.0 34 ............................... AGATAAAGTTAATGCTATACGTTTATTAATATTG 20575 31 100.0 34 ............................... AAAAAAATTACCGGTGCTCGTGCTTAATTTAAAG 20640 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ==================================== ================== 9 31 100.0 35 TCGCACCCCATGTGGGTGCGTGGATTGAAAT # Left flank : TTAGAAGAATATCCTCCGTTTTTCTGGAAGTAGGTGATTGGATGCTTATTTTAGTAACATATGATGTTCGTACTTCAAGTATAGGAGGGACAAAGAGGCTAAGAAAAGTATCAAAGATTTGCCAAAATTATGGTCAGCGTGTGCAAAATTCAGTATTTGAATGTATTGTCGACTCTGCCCAATTCACTGAATTGAAATATACCTTAGAAAAAACTATAGATGTTCAAGAAGATAGTTTAAGATTCTATCGCTTAGGAGAAAATCATAAAAATAAAGTGACACATATCGGCACTAAAGAGTCTATTGATATAGAAGACCCACTTATTTTTTAGTGCGAATCATAAGCGCACATAAATTCTTTTAGTCATTCGCACTAAAAATTGCGTCAATTAGTCATTATATTAGATAAAACGTTTTAATATCTATATATTATTGAGATGAAAAGTGGAATAATAGTTGTTTTTTTCAACACTTGTGCTTAATAGTTGAAAAAAACGCAG # Right flank : TTTAAAAGTTTGACGTAGTGAGTTATAACTCTGTGTCGCACCCCATGTGGGTGCGTGGATTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCACCCCATGTGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCGCACCCCATGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.90,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 21458-21687 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOWN01000005.1 Halolactibacillus alkaliphilus strain CGMCC 1.6843, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 21458 31 100.0 34 ............................... ATCAAAAAAATTAGTTCCAGAACTAGAGCCTAAG 21523 31 100.0 36 ............................... AATAAAGGCGCGTATGACGTCGACTATTTCTTATCG 21590 31 100.0 36 ............................... TTTTGATTAAATGTTAAGTCGTACTCTACACCTTCG 21657 31 80.6 0 .......T..C.A....A.A..T........ | ========== ====== ====== ====== =============================== ==================================== ================== 4 31 95.2 36 TCGCACCCCATGTGGGTGCGTGGATTGAAAT # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACCCCATGTGGGTGCGTGGATTGAAATTCGCCATTAGAAGTTAAGCGTTCAGATGACGTTAAG # Right flank : TGACGATGAGGTTATGGTACTTTAAAATTAATGTCTGAAAGTATAGTTAATAATATTAAGATATTTTTAATAGTAGTCAAGAACCCTCGTAACTTCAGTCATGGGGTGTTGACAAGAAATATCAATCTGTACCAAGTCATGATCAAAGGGAGTTAAATGATGAATAAAATACTTATCGCGACAAAAAATCAAGGAAAAGTAGAGGATTTTAAAGTTCTATTTGAACCGAAAGGGATTGAAGTCGTCTCATTATTAGATTTGGATCAAACTATTAGTAACATCGAGGAGACGGGAAAAACATTTAGTGAGAACGCAATATTAAAATCAGAAGCCATCTCGTCCTTGCTAAAAATCCCAGTAATTAGTGATGACTCGGGATTAGAGATTGACGCATTAGATGGTGAGCCTGGCGTATACTCTGCACGTTATGCAGGGCTTGAAAAGGATGATCAGGCTAATATTGATAAAGTGTTAAGTAATCTAAAAGGTATCAATGAAAA # Questionable array : NO Score: 8.62 # Score Detail : 1:0, 2:3, 3:3, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCACCCCATGTGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCGCACCCCATGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.90,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //