Array 1 95205-95572 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP063111.1 Haemophilus parainfluenzae strain M1C152_1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 95205 33 93.9 34 ........T.......................C AAATGGAATTGGTTGCCTTGCCAATTTGTTGGAA 95272 33 97.0 37 ........T........................ CAAGATATTTACTACCGCTCCATGTGTAAAGCTTACC 95342 33 100.0 33 ................................. CTTTGTCGTTTCGTGCAATCCCAGCACAAAGCT 95408 33 100.0 33 ................................. AAGGCGGAACGAATGAATTTAAGAGATAGACTT 95474 33 97.0 33 ................................A TTTTAAGAAATGGCGATCAGGTTGTTGGAATTA 95540 33 97.0 0 ................................A | ========== ====== ====== ====== ================================= ===================================== ================== 6 33 97.5 34 GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACT # Left flank : GAGCAAACCGTCTCTGAGGGCACGCTGTGGTATATGCAAACTCGCCACCGCGTCCTCGTCGTGTTTTCAGACAACCTGCGCGCCCAAACACTCGCCACCATCGTCGGCGTGCGGGCGCAATATTCGGTATTTGAATGTGATGTCACGCCTGACCAGTGGGTTATGTTGAAAAACAAACTGTTGGAAACCTACGATCCCACATGTGACAGTCTGCGTTTTTATCATTTAGGCAGTAAATGGCGTAATAAAGTGGAACATCATGGGACAAAACCAGCAATAGATGTATTTAAAGACGTACTTGTCATTTAGTTCGCTAACCTATTGTTCTCATTAAAATCCTGATGGGATAGCGATCTTCGTTTTCTTTAACAATTTGGATGACTTAATCTATTTGTATAACGGCAATACGACCGTTATACTGACTAAACTCCTTGTCATAAAATCAGTTAGCGAAATACGGTATTTAATTTGCTGATTTTTCTTACTTTTTTATGTAGGGA # Right flank : AAAACTTAACAAAGTTGAATAGTATAATATTTACAGCGCAACTACTCTATCTCTCAACCCAATTCATAGCCAATCACATTCTCTCTTGAATTTCCCCCTTATTCGCTCTAGACTATGCCCCATTTTTAGCTTTCATGATTTACAATTATGCGTGTTTCTGACTTTCATTTTGACTTACCAGATGAGCTGATTGCTCGTTACCCTAAAGAAGATCGCTCTTCTTGCCGTTTGCTACAGCTTAATGGCGAAAACGGGGAAATTTCTCACCGCACTTTTACTGATGTATTAGATTTAATCGACGAAGGCGATTTATTGATTTTTAACAACACGCGCGTGATCCCTGCTCGTATGTTTGGTCGAAAAGCCAGTGGCGGGAAAATTGAAGTGTTGGTTGAACGCGTATTAAGTGAACATCATTTCTTAGCGCATATTCGTTCATCAAAAGCCCCGAAAGAAGGCGCAGAATTATTTTTAGGCGAAGATAAACTGGGTGAAAATAA # Questionable array : NO Score: 5.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACT # Alternate repeat : GCAGCCACTTTCGGGTGGCTGTGTGTTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1803356-1802198 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP063111.1 Haemophilus parainfluenzae strain M1C152_1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1803355 36 91.7 30 .GGA................................ CGCGTTCGATTTGACGAACATTATCCCAAT 1803289 36 100.0 30 .................................... TGACAGATCGGGCATAAAATAAAAGGGCGA 1803223 36 100.0 30 .................................... TTGCAAGCACTAAAAACCAACCCGATTATA 1803157 36 100.0 30 .................................... AAATCTTCAATTCTTTTTCACTCATCGTCC 1803091 36 100.0 30 .................................... TAAGCCATTAGAAGTAATTGGCTCGTCATA 1803025 36 100.0 30 .................................... CAGCTTTCTTTTGATACGTTTTCACCCTCT 1802959 36 100.0 30 .................................... GACGGCAATCAATTCTTCGTCTTTAAAGCG 1802893 36 100.0 30 .................................... AAAGGTGCACAGATTTTGAAGAAGTACACT 1802827 36 100.0 30 .................................... ACACACACGCCTTGCGTATTATAGCGTACT 1802761 36 100.0 30 .................................... ATATGCAAGGTTATCGTAGTTCTGTGACTA 1802695 36 100.0 30 .................................... TCCTATAACAATGATATTTAGCCCAGTTCG 1802629 36 100.0 30 .................................... AGATAAAACTCACGCAGCTTACTACGTATC 1802563 36 100.0 30 .................................... TGACAGAGTATTTGATCAACTTATCGCATC 1802497 36 100.0 30 .................................... GCTAAAGCCGTTCTCAAAATGCGAATGGAA 1802431 36 100.0 30 .................................... AAAATCATCAAAGCTAACATTAGGTGATGA 1802365 36 100.0 30 .................................... AATAAAGGCTCGATGTGCGCTATTTGTATT 1802299 36 100.0 30 .................................... TATCTCGTTGTGTAACTTACCGTCCATTTC 1802233 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 18 36 99.5 30 GTTGTAGCTCCCTTTTTCATTTCGCAGTGCTATAAT # Left flank : CTTTGACTTAATGCAAGAAACCTTGCGTATCACCAATCTTGGCAACTTAAAAGCAGGGGATTTTGTCAATATCGAACGTGCAATGCAAATGGGCGCAGAAATTGGTGGGCATATTTTATCTGGCCATGTTTATTGTACCGCAAGCGTTTCACAGATTATCGAAAGCGAAAATAATCGTCAGGTTTGGTTTAAATTACCTACTAAAGACGTGATGAAATATATTCTCACTAAAGGATTTATTGCGATTGACGGCATAAGCCTTACCATCGGTGAAGTGAAAGGTGATGAATTCTGCGTGAATTTAATTCCAGAAACCTTACATAGAACTCTGATTGGCAAACGCCAAATTGGCGATCTAGTGAATATCGAAATCGATCCACAAACACAAGCGATTGTGGATACAGTGGAACGATATTTAGCAGCTAAAGCTTAGTTGGAATGAAAAAGTGCGGTAGAAAACAATGTTGTTTTTTACCGCACTTTTTATTCCTCCGGAGGAA # Right flank : AGGGACACCCAAAAGCCCCGTGCCATAAGGTTTAGGGGCTTTTGTTTTGTCTAAAAAATGGCTAAAAAAGCAATAACTGATTTGAATTGACCTTTTTTTCTTGCGGTTTTTTCTCTCCCACTAAAATTTCCATGCTCGCAAATTGTTTTTCTGTAATAGATAAACATCGAATGGAACCCTCTTCAGGTAAGTGTGCGACGAGTCTTTTATGATGTTTTTCTAACGCATCTCTCCCTTTAATAATTCGAGTATAAATAGAAAGTTGCAACATTTGATAACCATCTTTAAGTAAAAATTGACGGAATTGGTTTGCCGCCCGCATTTTTGCTTTAGTGGTAACCGGTAAATCGAATAAAACAATCATACGCATAAATACTCCCTCACTCATATTGATATTCCTGCAATGTATCGATCTCTGGTAACTGCAATAATGCTGCATTTTTTTGAATAAGTGCAATTTGTAAAGAGGCAACAGTTTTATCTATGGCAGTTAAGACACT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTTTCATTTCGCAGTGCTATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTTTCATTTCGCAGTGCTATAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //