Array 1 10692-10004 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJLJ01000126.1 Fischerella muscicola SAG 1427-1 = PCC 73103 contig00131, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 10691 37 100.0 35 ..................................... TTAACACTCTAAAAACATGGCGCGCACAATACAAT 10619 37 100.0 34 ..................................... AGCACAAGCTAGTGTTTGTTGCTGGCGAGTTAAT 10548 37 100.0 36 ..................................... TTCAGATTGCACTTCAACCCACTGATCGCGGTGAGA 10475 37 100.0 35 ..................................... TCATCTTGAGTTATTTGCGCGCAAATAACCAATTC 10403 37 100.0 35 ..................................... TTTGCATTACTTTTTCTTTGTTCAACATTTTTACC 10331 37 100.0 34 ..................................... AGCTAATCGCATTTAGGACAGATGGATACCACTT 10260 37 100.0 39 ..................................... TTACCCCCATAAACTTTGAAATAAGCATCAGGTTGTACT 10184 37 100.0 35 ..................................... ATGGCGATCGCAACTTGTCTTACTAATCCACTTTG 10112 37 100.0 36 ..................................... AGAAATGCTTTCGTCATAGCCCGCTATCCATCCCTA 10039 36 89.2 0 ..............................CA-...G | ========== ====== ====== ====== ===================================== ======================================= ================== 10 37 98.9 36 GTTGCAACTTACACAAATCCCTATTAGGGATTGAAAC # Left flank : AGTAATATGCTGCCCAAAAGCTTGAAATTTCATAAGATGCTCCCTAATAATCTATCTAATTCCATCTACAAAAAGCAGTGAGAATAACAGGATCAGTTCGCTAGCATTTGGCATTTTGGCAGAAAACAAACTTATAGGCTTTTTTTAGCTATATATTAACTATTATTCCATTACACTAATTTTGATAAGTTTGTAGTAGGGGCTTTAGCCCTTATTTAATACGAATAATACGAAGCCTCTTGTCTTGTGATTCCGCCAACCTATAGGTGTTTGATACAGACACTAAAATTTTTTGCCTGAACGCTTTGCCTGTTCTGGGTTTGAGCCATTCACATCAAAATAGAGGTTGACGCAATGTCTGAAACTATTGCCAGTAAAGCTTTTGAGCCGATTTTTTCTCAGCCACTCTTGACAGTGCGATCGCTCAAACGCTATATTTACTCCAGGTCTGCACCACTGAACCTTGAAAACCAAATACAGCAAAGGTTCTAAATTGAGCA # Right flank : TTAATTTACGAGTCGCAAAAGTTAATTTACGAGTCGCAAAAGTTAGTTCACGAGTCGCAAAAGTTACTCATAACACTCCTTTAGAACTGGGGATCATCCCTGCACGACGGGGATCAATTTCTAACGCCATCCGCATTGCTCTAGCAAAAGCCTTAAATGTCGCTTCTATAATGTGATGAGAATTGATCCCGTCCAGTTGGCGAATGTGGAGCGTCATCTGACTATTACCTGCTAACGCCACAAAAAATTCTCGTACTAGCTGGGTGTCATAAGTTCCGACTCGCTGAGTGGGAATTTGCAAACCGTAGCTGAGATGAGGACGTCCCGAAAAATCTAGTGCTACTTGAATTAACGCTTCATCAAGAGGTGCAAGAAAATTACCAAAACGGACAATACCTTTTTTGTCACCTAATGCTTTGCTGATAGCTTGTCCCAAAGTGATAGCTACATCTTCGTTAGTGTGATGGTCATCAATGTGCAAGTCTCCCGTAGCTTGGATG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTACACAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 1 4326-3222 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJLJ01000177.1 Fischerella muscicola SAG 1427-1 = PCC 73103 contig00185, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================================================================================== ================== 4325 37 100.0 36 ..................................... TTAGAAGGCTAGATTTTTACGACACAGGGTGCATCC 4252 37 100.0 33 ..................................... CGGAAGGATGCTGAGGACTGGAAAGAAGGCAAA 4182 37 100.0 35 ..................................... CGTTGACGTATTTTTGCTGAAGAGCAATTTGTATT 4110 37 100.0 35 ..................................... TCTAAACTTTGATTTAACTCCTGTCTCTCATGAAT 4038 37 100.0 33 ..................................... TAGAAAAAATCCGAATCAAAATTGCACGAGCTA 3968 37 100.0 35 ..................................... AAAATGTTACTTTGACAGTAAACAATCTACCAACG 3896 37 100.0 34 ..................................... GCAAAACTAACTAACACCCACCCAGCGATCGCAA 3825 37 100.0 34 ..................................... AAAATTCTCACCCCCTCCCGACTCACTATAAAAA 3754 37 100.0 36 ..................................... CGGGCATCGACAGCGATCGCAGACTACTATATTAAG 3681 37 100.0 33 ..................................... GGGATTAGAGCGTTACCTGAGCGTTACCTGAGC 3611 37 100.0 32 ..................................... CTAAAACCACAGGGTTAGCCATTGTGCAAGGT 3542 37 100.0 107 ..................................... GGCGAACTCAAAATTGCTTCGTAATCCACGCCAAGTGTGGAGTGATTTGCAAAACTATTAGGGATTGAAACGGCGAACTCAAAATTGCTTCTGATGCATTGGCTGAT 3398 37 100.0 32 ..................................... AAACTGCACGATCGCAATAAAGACAAATTCAC 3329 37 97.3 33 ...........................A......... TAGCTGCCTACCAACATTATTTATGGTCTTCAG 3259 37 86.5 0 .............T....T.T.............G.T | A [3226] ========== ====== ====== ====== ===================================== =========================================================================================================== ================== 15 37 98.9 39 GTTGCAACTTCAACTAATCCCTATTAGGGATTGAAAC # Left flank : CAGCATCTTGACTCACAACACAGTTATTTGAAGTCGGACAAGAACTAAGATGATGATTAGTCACTCCCAAGCCAGAAGTATAAGCCCAAGTAGCAGCAGGAAGTATTGTCAGGCTGAAGAATATTACAAGGGCGAGACTCCACAGAAGTCGCTGTGCAAACTCTGTTAGCACACGGAACATTATAAATTCACTCCTCAATCAATAGCACTTTCCCTATAATAATTAGCGTCACCTCCAAAAAATACTATTTGCGCGAAAGGGTAGGTGTTTTTCTGAACATGTCAAAAATATTGGCTGAAACCATTACTCTGAGTTGATTTGAACCTTATTGTACGTATAAGGATGTTTGCGGTATCGCCAAAAAGCTTGCTATGACTAGATTTGAAGGATTTTTTCTCAGCCGTCACTTGACACACCAACGGCTGAAAAGCTATATTCTCTCTAGGTCTGCACCACTGAACCTTGAAAACCAAATACAGCAAGGCTTTTAAAATGAGCA # Right flank : TGAAACCAGCTTTAATTGTAAGATATCCAAAATACATAGCATTCCTAAATCATTTGTGAGAGACAAGATCCCCGACTTTTTGGAAAAGTCGGGGATCTTGACTTTGCGATTTTCACAAATTATATAGTTGATATAGATCAACGAGAAGCGATCGCCCCTACGAACCACTAACCACTAACTCAGTTGTGCTACGATTTATATTCTGTAGAAGACACTTACCCAGTGCAAACCTACGAACCACTAACCACTAACTCAGTTGTGCTACGAGTTGATTTTCCAACAGAGTTTCATTTGTAAGTAAATCCTCAACGGTGATTCGTAAAAATCGTTGTTCATCAACTAAAAATAGGATTTTAATGCGATCGCTTCCGGGAAATCCTAGTGGTGTCAGATTCGCAATTGTCCTCGCCCCATCTCGATCATTGAGGGGTTTGACAGTCGTCACACCACTATCAAGACGACGGGTAATCATGCGATCGCCATCAAAATAAACTTCTGTT # Questionable array : NO Score: 8.76 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:-0.44, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTCAACTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : NA // Array 1 3234-3489 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJLJ01000267.1 Fischerella muscicola SAG 1427-1 = PCC 73103 contig00276, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 3234 36 100.0 37 .................................... ACGTAGAAATGCTTGAACCCCCAATGCTGCACTTGTG 3307 36 97.2 36 ...............A.................... CCTTGCATACCACGGGCTTTGTTAACCCCGAGTTGA 3379 36 94.4 36 .........T.....A.................... TCACGAGTGATCTCACCTGCGAGAATGCGTTCAATG 3451 36 91.7 0 ......G...G.....................C... | AG,T [3481,3484] ========== ====== ====== ====== ==================================== ===================================== ================== 4 36 95.8 37 CTTTACAATCACATCGCCCCGAAAGGGGATGGAAAC # Left flank : GGGAGAAGGGGAGCCAATTTCACGCGTCCCTCTCCCAAACATGCTACGGTGTACACACAAATCTAGGTTGAGCGCATCTTTATCGCCTCGGAATAAATTCCGAGTCTCATAGCGCAAGTCCTCTTAAGAGGACTCAAAAAAAAGTTTGTTCTAGTCCACTTGAGTGGACTTAAGCTATTAGCCTGGAACTTTAGTTCTAGGCGGGATATTGGTTCAGTGAGTTAAATTTAATAACCCTCTTGTGGGATCTTGCTACGCATCTCTACTTGACAAATAAAAGCAGCAAATCATACCCTAATTGAAGTGTGTTGAGTTTCATCGACACCAGTCGCCCGAACCTTGAAAACTTCATAAATTCGTTGAGTGGTGTCGATGCTTTATGCAGCAATGTTTCCAGGCTGCAAAATCGATGATTTTTTGAGGATTTTTTGTTCAAATCTAGAGTGGTGTCGATCAAGGGGTCTAGAAGCCTCTCTGTGTAAGCGTTCTAGATGTGAACT # Right flank : CTATCAGTTGCTCATGTCGTAGATTGCCTTCACCCGTCACGGGACGAAAACTCTTGATTTAGGTGGCTTTTTTAAGATTGCACTCAACCAAGAACCGCGATAAATTTAATCATTTATTTGCGATCGCGTAGCTGCTGCTTTGCAGTATCGCTTTCATGTTTGTAAGAAATGGGTTCCCATTTGTAAGAAATAGGTTCCCATTTGTAAGAAATGGGTTCCCGTTTGTAAGAAATGGGTTCCCATTAATAAACAACATGAAGACATTGGTCACAAATGTCTTCATGTTCTCTATGGATGGAATGATTTTTGTGATGAATGTGAATTTGAAGAGTGCGTAGACGCGCAAGCGCGCTTCTCGGAACGCGATCGCTCATCAGTAAAAAACTAGCCAGAGAATAAATTCTCTGGCGGAATATCAAGCAATATGGTTCATTTAGTTTTTACTTCTTTGGCGGAGTGGGTAAATTCAAACTGGGTAAAGGTGTACTTTCACTCTGATT # Questionable array : NO Score: 5.34 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACAATCACATCGCCCCGAAAGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.10,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 24680-25724 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJLJ01000363.1 Fischerella muscicola SAG 1427-1 = PCC 73103 contig00388, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 24680 37 100.0 35 ..................................... GTGAAAATAATATTTGACTTTTTGGGGCGAGCAAG 24752 37 100.0 36 ..................................... TACCTCGTAACCTTCTAACACTAACTCGGATATCAC 24825 37 100.0 35 ..................................... ATCCCTGGCTTATCTCCCCACTGCACACATACCCT 24897 37 100.0 35 ..................................... AATCTCCAAATCACCAAAGACACTGGCACTCAAGC 24969 37 100.0 35 ..................................... ATTAAAGTCTTGAATAGCCTTAAACTGAACATTTC 25041 37 100.0 33 ..................................... TTGCTCTAACTCCTGGGCTGCCCAGTCTGCCAA 25111 37 100.0 34 ..................................... AACTTACCTAAGCACTCCTGAGCAAACTGTAGGC 25182 37 100.0 37 ..................................... TATCTTTTGTGTAATCATCAAACTTTATATATCTGAA 25256 37 100.0 34 ..................................... GATTATACGCCGGAGTCACAGAGCAAACACCAGC 25327 37 100.0 36 ..................................... TTACCTCCTATCAAGAAATTTCAATGGGGCGTTTGG 25400 37 100.0 38 ..................................... CACCATGTCGCGAATGATAACATTCCCCTTTTTCTGCT 25475 37 100.0 34 ..................................... AACTTCAATTCCTGATCCTGCGCCACCAATCCAG 25546 37 100.0 33 ..................................... ATCAGTACGCTTATTTAATTGAGGAAGAGTCTA 25616 37 100.0 35 ..................................... ATCGACATTATGACCAGCAATCCTTGCTTCATTGA 25688 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 15 37 100.0 35 GTTGCAACTTTTATTAATCCCTATTAGGGATTGAAAC # Left flank : CCGGAAGATAAACGTCGTACCAAAATTCACAAAGTTCTCAAGTCTTATGGACAGTGGATGCAGTATTCTGTATTTGAGTGTAACTTGACTGAAACTCAGTATGCTAAACTGAGGGCGCGGTTGGCAAAACTCATTAAAGCCGATGAAGACAGCATCCGCTTCTATTTTCTCTGTGCTTGCTGTCAGGGTAAGATTGAGCGCATTGGTGGCGAAATGCCAATGGATACTACAGTGTTTTTTGCTTGATGAAGGTGCAGACCACTAGGTGTAGAAAAAAAGTAGTCAAATTGTGAGGCTGAAATTCTGATTCTGTCTATGTTAGAGGCTAATTTGATGTTGAATGAGGTCTGCACCTTTTCTGTAAATTTTACCCTGACTAGGTTTGAGCGATTTTATACTCATTTGCTATTGACAGTGCGATCGCTCAAACGCTATATTTATTCCAGGTCTGCACCACTGAACCTTGAAAACCAAATACAGCAAGGCTTCTAGATTGAGCA # Right flank : CTTGTCAACAACTTGAGACACAGCGATTAAGCTAGAAAATAGGAATATCAACAGGGAGACAAATGTGAACAGTATAGTTCACTGGCAACAACGAGTAGGGAATCAAAGAGACTGGGTGTGGCGGGGTTGGCAAACTCGCTATACTTATATTCGCCCTAGCCAAAATCACCACAACTCAACCCCCTTAATTTTGCTGCATGGGTTTGGTGCTTCCATAGGACATTGGCGACACAATTTAGAAGTGTTGGGAGAACAACATACAGTCTACGCGCTAGACATGTTGGGTTTTGGTGCTTCCGAAAAAGCTTGTGCAAATTATAATATTCAGCTTTGGGTAGAACAAGTATATGACTTTTGGAAAACATTTATCCGTCAGCCTGTAATCTTAGTAGGTAACTCCCTCGGTTCGCTGATTTCCTTAGCTGCTGCTGCTACTTATCCAGAGATGGTGCAGGGTGTGGTGATGATGAGTTTACCAGATCCATCTTTAGAGCAAGAAG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTTTATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : NA // Array 1 12681-12284 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJLJ01000522.1 Fischerella muscicola SAG 1427-1 = PCC 73103 contig00596, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ==================================== ================== 12680 38 100.0 33 ...................................... TAAAAATATGTCTGTTGATAACAATGCTATTCT 12609 38 100.0 34 ...................................... CATTCACGAAAATTATTCATCAATACTGAATGGT 12537 38 100.0 36 ...................................... ACGCTGTAGTAATGGGAGTGGTGATTACATCAGACG 12463 38 100.0 34 ...................................... TTGAAGTCGTAGAAAAATCTAGAAAGACAGTGCA 12391 38 94.7 32 ....................................AG GAAGTTATTTAACAAGCAAAAAACGCCTTCGA 12321 38 86.8 0 ......................T....TC...A....C | ========== ====== ====== ====== ====================================== ==================================== ================== 6 38 96.9 34 GTCTCCACTAACAATGTGGAGGCGAATCAATGGAAACA # Left flank : TACTACAAAAGGGGAGTGAAGGGGCTGCCGACGGCAGCCCCTTCACTCCCCCCAGAATGATTATCATTATTGTTTTGGCATAATTTATTTTTTGGAAGTCCCTGAAAAGAGTTTAAAATTATTTGAACCCAATCAACTGATTATTCAAAAGTGCGATCGCATCGCATTTTCAAAAAACCTAATACCTTTATTCAGCAAACAGAATAAAATATGTATCAAAGTCCTAGTTTGTCACTAGACACTAAATTTTTTCGCGAACCCCTGGCTGTTTTTATCGAACGCTTGTTATATAAGACTCAAAAGCTTATCTGTACTAGTTGTGAGCGATTTTATCTCTAAAGGAGGTTTGCGAAAATGCTGAAATCCTTACCACAAATAATGTCTGGGCAATTTTACACACTAAGGAATTTGACAGACGATGGCTGAAACGGTACTTTTGGATCTGGTTCGCGAAAATGGACACTGTAAGTCTTTTATTTCAAGGCTTTCAAACCCCAGCA # Right flank : CACACAGACAATAAAGAAATTTTGCGGCTTCATAGCGATTTTATTCTTCTTGGTTTCAACTTTTAACTTGTTCACTGAGTTCATAATCATTTAATGCTTCTTTCAATTCTTGATGCACTTGACACATAAGACTAGCTTCCTGCAATGAAATAAAGTTCTGCCCAGAGATAAAATCCAGACACCCTAAAACTCTAGCTTCCCATTCAGATTGATTGCTAGTTTTCCATGCTTGAAATACTTCCGTCTTTTCCAAACCTAGTAATTGATGAAATAAGTTGTTTCTTTTTGTTCTAGTATCTTCGTTAAAGATTTTAACATGTGGATTTAGCTGCCAGTTTGGTCGAAATGTGGGTATTAATTTATAAAGAGGCGTTTTCTCATCCTTTGTAAAGCCTCGAATAATGCCTTCTATAGCACGAAAACTATGAAATAGCGCTTCAACGGTATTACCCTGTTCAAGGCGTACTGTTGCCAAATAAGCAGCTTCATAACCAGTCCAC # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCACTAACAATGTGGAGGCGAATCAATGGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.26%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.60,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 1409-646 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJLJ01000523.1 Fischerella muscicola SAG 1427-1 = PCC 73103 contig00597, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 1408 35 100.0 39 ................................... TTGTTGAGTCACGATGACAGAATTTCCAGAATCATCATA 1334 35 100.0 38 ................................... TTTAGAAATGGTGTGAATGCACTATACGATTTAAAAGA 1261 35 100.0 40 ................................... CTGACATTGATTTTTCCAGCAATTTGATTTTCTTGTATGC 1186 35 100.0 39 ................................... TGTACAGCGATTTCCACGTTTGCATGGATTTCTCCTGGT 1112 35 100.0 39 ................................... TGTCCAATTTCCCGTATCAAGCGAGCCTTTAACTCATCA 1038 35 100.0 37 ................................... ATTGTTAGAATCTGCTGCTTTGACTTCTTCTACTGAA 966 35 100.0 37 ................................... AAGTCGTTTCATTCAGAAACAGCAAAAGAAACGCCCG 894 35 100.0 34 ................................... AATTGCACTTTAACTTCTAGTGGCTGAGATTGGG 825 35 100.0 39 ................................... TTTGTACTTTACCCAGAATTTGCGCTATTTTAATCATTT 751 35 100.0 36 ................................... CATATAGACAATCACGCCGACTCCACCGAACAGCAG 680 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ======================================== ================== 11 35 100.0 38 CTTTAAACTTCTTCGGAAGTTGAATTAATGGAAAC # Left flank : TTATCCAGAATTTGTTTCGGGCTTTTTTGATGGGCAAGAGTTTTGATACAGTGTGAAACGCCTAAATCTAGGTTTTATAAGGCTTTGAGAAATCTGGTGAGAAATCCGGGTTGAGCATCCCTTTTATTGGGGTGCGTGGATTTGTCAGACAAGTGAAAAGTAAAAAGTGAAATATAAATGAGATAATTATTTTAGACTGTAACTTTGAGTTGGCGATCGCGCTTAAGTTTTTTCTTGTAGTACCCTTGGCTTTTTAGTTTTCTTAATTATTGGATCAACTTATAATTTATTGAGCAATTGATAAGCATCTGAGGGGGTCATGCAATGGCTGAAAGCCTGATTCCTTCGTAGACCCCCTCAGATAGATTGTTGGGTAAGGCTTTGAGAGGTCTAAAAGATGGAATTGTTGAGAGCTATTGTCAATTCTAAGAGAATAAATTTGACTCCCTCAGATCAAGGAGGTTATAATCCTTGCAGTGTAAGCTTTCTATAAGCCTACC # Right flank : TGGATTAATTTTGTAGTTTTCAACCTATTTGAGGGACTTCCAGAGAATAAATTATTCCAAAAAAAACAAAAGACAGCATATATCTAAGAATGATAATCATTGTGATTGGGGGAGAAAGCGGTTGCCGTCGGCAACCGCTTTCTCCCCTCAATTAGTCATAAAGAATTTACACCCAAGAGTCATTTCTGCTAGGGTGAAATAGTGATGATTGAATATGGCGTCAAGCTAAATAAGTGCTTTGCTCAAGATAGAATTATTAAGTTTGTCCACAAGAGATATCAATAAACCAATTTCCCAAATTTGCATAAAGCTCATGACTAGAATTGGTTAAACGTGAGATTTGTTTTTCAATTTGAGACATAGCTTTTTTGGTAAGTTTTACACCAGTTTCATAAGTTTTTTGTACTAGCTTAACCACGGGTTGTTTGCCTTTCCATTTCATAGTCGCAGCAAATTTTACAGCCGTTTCTACTTCATCTAAGATACTGCCATTCCAATGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAAACTTCTTCGGAAGTTGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 9481-9012 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJLJ01000079.1 Fischerella muscicola SAG 1427-1 = PCC 73103 contig00080, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 9480 37 100.0 37 ..................................... GTGCTATAGGTCTCAGAGGCAGTGTAGAGGACAGACT 9406 37 100.0 34 ..................................... CATCGATAGCTTGCGTATCTCCTCCAAGTCTGCC 9335 37 100.0 36 ..................................... AAGTGAATTTTTTGTAACATTTGAAGATATTCTGAA 9262 37 100.0 32 ..................................... CTCAATGTGAAGCGGATTTGATACCCAAAAGA 9193 37 100.0 37 ..................................... TTTGCTTATTGCAATATTGTACAGATGTGATAAGATT 9119 37 100.0 34 ..................................... TTCTGCAAGCATTCCTAAAAGATACTTGCATTTG 9048 37 91.9 0 ...G..............T.............A.... | ========== ====== ====== ====== ===================================== ===================================== ================== 7 37 98.8 35 GTTTCAACTTTTATTAATCCCTATTAGGGATTGAAAC # Left flank : GTAAAAAACTAGTCTATGGTTGTTTTGGTGCTTAAATATATGAAAAATAGTATTTTTATACTATTTTGTTTGAGTTTATATCTACTCTTTAACCAGTATTTTACCTGAGACTGGTCAACCGATTTTGGATTTTGGATTTTAGATTTTGGATTGACCAGATAACTTATTTTTTTGCTTGCTGTCAGGGTAAAATTGAGCGCATTGGTAGCGAAACACTAAATAAATACTACAGTGTTTTTTGCTTGATGATGGTGCAGACCACTAGGTGTAGAAAAAAAGCAGTCAATTTTTGAGGGCGAAATTCTTGTTCTGTCTATGTTTGAGGCTGATTTGATGGTAAATGAGGTCTGCACCTTTTCTGTAAATCTTACCGTGACTAGGTTTGAGCGATTTTATCCTCATTTGCTCTTGACAGTGCGATCGCTCAAACGCTATATTTACTCTTGGTCTGCACCACTGAACCTTGAAAACCAAATACAGCAAGGCTTCTAGATTGAGCA # Right flank : GGCTAATTCTTGAAGATTTACAAGATTAAAATTGAGTTCAATCAACAATTATACCCCTGGCAATAAAGGGGTATAATTACTTTTCTTATCTAGCTAGCAATTGTTGGCACTGTTCAAGCATGAGTTTTACACTCCACAAATCTAGAAGTTTCTGTTGATATCTTCTAGAGTGTTCATCATTTAGCCATTCATTATTTTTGGTAGCTCGTATCAATGCTTTTTGAGTATCAGTAGGTTGACCGAGCAAATCGAGTGCAACATTGATCGCATGGTATACCTCTAGACTGGGAGAATGTATTCCTACTCCATTTCTCATTTGGTCAATTGCTTTATAAGGAAATGCAGAAAGTATATTTACCCATGTTTCGGTTTTTTCCCAACTACCTAGCGGTTTAACACCATACTTTTTCCCCAGTTGCTGCAATTGTGACAAGCTAAGGTTTTTGAGCGATTCTCTTGATAACATAATAGTTGTCTATCCGTTATAGGTGGACTTGGTG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:0, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACTTTTATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : NA // Array 1 34130-33630 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJLJ01000072.1 Fischerella muscicola SAG 1427-1 = PCC 73103 contig00073, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 34129 37 100.0 42 ..................................... ACCATTGGAACCGTTGTTGCCGTTAACACCATTGGAACCGTT 34050 37 97.3 37 ......................C.............. GCCGAAGGCGGCGGCCAGTAAGCAAAAAACATTTTCA 33976 37 97.3 43 ......................C.............. ATCAAGGCTGAGTAAACCTCGACCCTGTACCCAAGTTGCAGAG 33896 37 97.3 40 ........T............................ TGTTTGCGCTCTTCATCTTCATAATCTTCTTCGTTGTTGC 33819 37 100.0 43 ..................................... TTTTGAACCAGGGACACAAACATCCTGTGCTGGCTTGTCAGAA 33739 37 100.0 36 ..................................... CTTATAACCTCTAAACTTATCCCACAAAAAAGCAGG 33666 37 94.6 0 ......................C.........A.... | ========== ====== ====== ====== ===================================== =========================================== ================== 7 37 98.1 40 GTCGTAGACTACCTTCACCCCTAACGGGGACGGAAAC # Left flank : TTGGATACGAATATTTTGAGCCATCTTTTAGTAACGCGCTGGCTACCTTTACTCAAACTCAGTGAAGATAATCTGCGGGTTTATCCCCTTGATGCGACGGCGAAACAGCAGGTGCGGGTATATGGTAGCGCTGCACCATACGAAGTGCCAGATTATTTAATTTTGTAACAATCCCAGTTTGGAAATCAACAGGGGTATGAAGGCTGAAACTGCCTGCATATCTACTTTTTCATGAATGTAACCAATTGTAAATTGAAGCGTTAAAATGACGCAGTGAGGATTCAGAATTATGGATGAGTCAAGCAAAGTAAATAAAAGAAAAGTTGGATTTTTTTGTTTGAGTCGTGGCTGTTTTGCTGTAATATAAAAGCTGAAAGTAATTTTTGGCGTTAAACGTTTTCGGAAATGTGTACTGTACAACTAGGTTACATCATCGCTTCCGTACACTGGCGCAACTGCACCTTGAAAACTAAATATGGTAAGTGTTTCCATAGGGTAGG # Right flank : TCTTGATCTACGTGGCTTTTTAATAATCCACTCAACCGAGAACCGCTATAAATTTAATTATTATTTGCGATCGCGTAGCGGCTGCTTTGCAGCATCGCTTTCCCATTTGTGATGAATAGGCTCTCATTTGTCGTGAATGGGTTCTCATTTGTCGTAAATAGGTTCCCATTTGTCGTAAATAGGTTCTTATTCATAAATAAGATGATCATAAAAACGATAAATAGGTTGATCTTATTTATGAATGGGTTCTTATTCATAAATAAGATGATCATAAAAACGATAAATAGGTTGATATTCTCTATAGATCAAACAATTTTTGTGATCAACGTGAATTTGAAGAGTGTGTAGATACCTAGTACAGTGAGCGCAGAAATAAACCTACCATAACCTTAAAGAAGTCGGGGATCTATGTTCTTAACTTCTGAAAAATCTGCCATGCTGAAATTGCCTTTCCTTGCATGAGTGCTGCTACTCCATTCAAAGCTTGAATCTCTTTCACG # Questionable array : NO Score: 3.01 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTAGACTACCTTCACCCCTAACGGGGACGGAAAC # Alternate repeat : GTCGTAGACTACCTTCACCCCTCACGGGGACGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA //