Array 1 327183-326362 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP054919.1 Kitasatospora sp. NA04385 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 327182 29 100.0 32 ............................. GTTGACGGTGATCGAGTCGTCGTACCGACCCA 327121 29 100.0 32 ............................. TTGGCCGAGGCGCTCACCCACACCGCGGCCGA 327060 29 100.0 32 ............................. TGCGCAGGTCGCGACACCCTTGGACGGGTGTC 326999 29 100.0 32 ............................. CTCACCCAGAGTCCGGTCCGCAGGTCGCTGTC 326938 29 100.0 32 ............................. GTCGTTCGCTTGCCCTCGATGGCGCGAAACGA 326877 29 100.0 32 ............................. ACCCTCACCGGCACCCAGTTCCTCACCTACTG 326816 29 100.0 32 ............................. CGTCCTCCCACGACTTCGGGGTGACCTGGAGC 326755 29 100.0 32 ............................. GCCTGTACCGAACCACCCGGGGGAGGGGTTGA 326694 29 100.0 32 ............................. TTGCGCTAGCGTTCCTCTCGGGTTCCCGCGAC 326633 29 100.0 32 ............................. AGTTCACCTGACTCTCCCTGCCGGTTGCCGGG 326572 29 100.0 32 ............................. ATCACCTGCGGGATCAGCAGCGTGCTGTCGGC 326511 29 96.6 31 .........................C... GGCTGCCGACCAGCACCTTGAGTTTGATCCT 326451 29 96.6 32 ..................A.......... GACCGGCCCGTCGACCAGCACCTGCCCGCCCG 326390 29 93.1 0 .............T........C...... | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.0 32 CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Left flank : CCACGGGCAACACGTCGCCGCCGGAGTCAACTACGGGGAGGGCAACTGGTGACCGTCATCGTCCTCACCAACTGCCCTGTCGGACTACGCGGCCTGCTCACCCGCTGGCTCCTGGAGATCTCCGCCGGAGTGTTCATCGGCTCTCCGACCGCACGCGTACGGGACGTCCTCTGGGCCGAAGTCCGGCAGCACGCGGGCCAGGGCCGGGCCCTCCTGATCCACACCTCGAACACGGAGCAGGGTTTCACCTTCCACACCCACGACCACGCCTGGAAACCCGTCGACCACGAAGGCCTCACCCTCATCCACCGACCGAACACCACCGCAACACCGGCACCCGGTCCCGCAAAGCCGGGCTGGAGCACCGCGTCCAAACTGCGCCGTTTCGGAAGACGCTGAACGACTGCTGGAAGAGCCTGGATTGCATGTCCGTTATGCCGGAATCAGCGAAGTTTGCAGTTTCACGCCACATCGCCAGGTAAACCCACAGGTCATCAAGA # Right flank : CCGGTCGTGACGCCTGCGACGACAACGATCATCGCTGCTCCCCTTCGTCGGACGCTGGCCAGGGGACGACCAGTGACGGCACGGCCCCTGCCTGAGGACGCCGCCAGGGTCGTCCTCGGGCATGTCCCACCAGCCTCCCAGCCTTTGTTGCTTGTCGTTGGCGCGCATGCCTTCGGGTGATTGGGGCACGCGAGTCGCATGAATCTCAAGGTGATCACGAGCCTCAAGCCCAGGGCGGCGAGTTCTCTGAAGCGCGTCGAGCAGGCCGTCGCTGAGCACGCCGGTACCCGCCGTCAGCTGGATGCGGCCCTTGCCGAGGCCGTGGCCGCCGGGGTGGGCGAAGAGCAGCTGCGCGAGCTGGGCCAGTGCGAGCCCGGCCCCATGGACGTCACGCCTCCAGTGAGGCGGACCTGCCCCTCGTCCGGGCGATCTGACGAGCCCTGTGAGGGTGGACGGGCCTAGGCCGTGTATCGAAAGTGGCTGGTGGCGAGCCGTAGGTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 337160-337738 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP054919.1 Kitasatospora sp. NA04385 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 337160 29 96.6 32 .............C............... GCGCCCTCGCCGAATACCAGCGCCGCACAGGC 337221 29 100.0 32 ............................. GCCCTCTTGCAGGCCCTCGACGCGACGAAGGA 337282 29 100.0 32 ............................. AGCACCGTCCAGTTCAACGGGGTGCCCACGCT 337343 29 100.0 32 ............................. AACACCGCGCCCACCGCCACCCCAACCAGGCC 337404 29 93.1 32 ................T........T... GGCCGCGACGGCGACAACCGGTCGCTCACCAA 337465 29 96.6 32 .........................T... GCGCCGTTGGGGTCGTAGCCGTGCTCCATCAG 337526 29 100.0 32 ............................. GCCGTGTCGGGGGGTGCGTCGTCTGGGGCGAC 337587 29 89.7 32 ...........G.CT.............. TGCCAGAACGTGAGAGCGCCTGGCGGTTCTAC 337648 29 79.3 32 ...........G.CT......G.T...G. TGGAGGCCCGCCTACGAAGCCCTGCTGAACCG C [337671] 337710 29 75.9 0 G.C........GAC.......T...T... | ========== ====== ====== ====== ============================= ================================ ================== 10 29 93.1 32 CTGCTCCCCGCCCGCGCGGGGATGGCCCC # Left flank : TCTCCCCCTCCAAAGCCCCGCACCGGGCGATCCCACCCCAGACCGCCAGGTATGGCAACACCCGGAAGAAGCCGCCCGACCACACCGCCGCTGCCCCCCCCCGGGGGGGGGGGGGCGGAACCCCTCGGACAGCACGGCCCCCGACACCCGACACCGATGGCCGAGACCCCCGCCCGGTGTCATACCGCCGTGGGACCATCCAGCCCCGCTCAACCGCCCCTTGACACCTCCACAGCAACAAACCCACCCAAAGGGCCGCGAAGACAGCCTCAACCACTCCCCGCACACATCGAGCCGATCCCTGCACCCCGACGACAGGCACAGCGACACTGCGACAACATCGGCTCGCCACGAAACCCGACGGCCGCACCACAGAACTGCACCCGCGCCCTGAAAACCCCCACTCGACCATAGAAAAGGAAGCTATGCCACTTATGTCCAAATCTTCGAAAGTTGCAGACTTCCGCTCCCCCGGCACATAGCACCGCAGGTCAACAAGG # Right flank : CACGTCCGGACCGAGCGCGTCAGCAGTCAACTGGCTCACCCTGTTTTCGGGGGCGGCCCAGTGCCCAGGCGCCGCAGGCCCATACTGCGGTATTCCGCGCGTAAGTGCGCACTACTGATAGATTCGACGCATGGATACCTATCCGATCACTGAGGCCCGCAACAAGCTCGGGGCCCTGGCGCGGCAGGTCAGCGCCGAACAGAAGCACATCGCCCTCTCGGACCGGGGCCAGACCATGGCCGTCCTGATCAGCCCGGCCGAGCTGGAGGAGCTGGAGTACTACCGGGCCACCGCCGAGTACCTGGCGCGCAAGGCCCGCGGCGAGACCGGGACGGCCGTTCCCCATGATGAGGCCCGCCGCCGGGTCCTCGGAGAGGCCTCGTGACCTACCGCATCGTCTGGGAGCCCGAGGCCCTGGCCGTAGCGCAGAAGTACGCCGTCGGCGACCGGGCGGGGATCGAGCAGGTCTTCCAGGCCGTCGACCTGCTCGCCGACAACCC # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCCCGCGCGGGGATGGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCCCGCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 345491-345886 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP054919.1 Kitasatospora sp. NA04385 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 345491 29 75.9 32 GGA.CAT...........A.......... AGGGCCGGGCAGGACGGGGCCAGCAGTCGGTG 345552 29 100.0 32 ............................. CGAACACCGGGCAGCTTGGCGAACTGGTTCTG 345613 29 100.0 33 ............................. CCACGTCACCGAGGGCGGCCGGGTCGAATTCGC 345675 29 100.0 32 ............................. TGCGTCATCCGGCGCCGCACCTTCGAGGCCCA 345736 29 89.7 32 ...........C.G...T........... TCGGCGGGATGGCCGCCGTAGTGCTCCACGAC 345797 28 89.7 33 .................A.....-.A... CTAGGCTCGCTGGCCCCGGCTGCCGCTGCCAGC 345858 28 79.3 0 .C.T.....-.A.........G......G | G [345872] ========== ====== ====== ====== ============================= ================================= ================== 7 29 90.7 32 CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Left flank : TGGAACGCTCCGAGACGGCAGTGCGGCAGGCCGCGCACCGCGCCCGCGAACACGTCCGGGCCCGCCGGCCCCGTTTCCCCGCGGACCGCGCCCGCCAGCGCGACGTCACCGAGCGGTTCTTCGCCGCTGCGACCGGCGGCGACATCAACACCCTCATGGAACTGCTCTCCCCGGACGTGACGCTGTGGACCGACGGCGGCGGCAAGGTCCGCCAGGCCCTCAAGCCGGTCGTAGGCCTTCAAACCGTGGCCGGTTGGTTCGCCGCACTCGGCACCGCGACCTACCAGGGCGTCACACCCGATCAGATGCGGGCGGAACTCACCTCGATCAACGGCGGCCCGGGTGTGGTCTTCCGCGGCCCGAACCGCGTGGTCGCCACGATGACCTTCGACTTCGACCCGGAGGGACGCATCTCGGCCATCCACAACGTGGCCAACCCCGACAAGCTCCAGGCCATCGCCGACGGCACCCGCCGCGAACTCACCTGAACCAGAACACCG # Right flank : GGCCGCCGCACGGGCGGCCTAGGGCGCGTATTTGGTCGTGATCAAGCGGTGGCTCTGGTGAGGTCCTTGATCCAGATCATGGCGCCGCGAAACTGGAGGCCGGCGAGGTAACTCTCGGGCTTCTTGTCGAACCGGGTGGCGATGCCCCGCCAGGCCTTCAGCTTGTTGATCAGGCGCTCGACGGTGTTCCGCTCTCTGTAGAGCTCGGCGTCATGGCTGACGGGACGACCGCCTCCGCTGCCCTTCTTCTTCCGGTTGGCGGCCTGGTCCCTCTTCTCCGGGATGACCGCTTTGATGTGGCGTTTGCACAGGTAGGAGCGATTGTCGCGGGACGAGTAGGCCATGTCTCCGGCGACCGCGTCGGGTCGGGTGCGGGGGCGGCCGACCGGCCCGCGAACCCGCATCTTCTTCAGCACGGGGATGAACTGCGGGCTGTCGGCGGCTTGCCCCTCGGTCAGAACGAGCACCAGCGGGCGGCACTTACGCTCGCCGACGACGTG # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.54, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [7-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 347316-347771 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP054919.1 Kitasatospora sp. NA04385 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 347316 29 100.0 32 ............................. GGGGCCACCAGCGGGACGAATCCGCAGGTCCG 347377 29 96.6 32 ............................G CAGGTGGGGAGCGTCAGGCAGAAGACTACATC 347438 29 100.0 32 ............................. GCGTGGGACGGCTACCTCCGGGGCGCGGCGAT 347499 29 100.0 32 ............................. AGCTCGCGCACGGCCTCGGCCACCTCCTCGTT 347560 29 96.6 32 .........................C... CGTTACGACTCACGCGCTCGCGCGCGTGTGGG 347621 29 100.0 32 ............................. ACGTCCCGCTACGTCTGCAAGCTGGCCGGCTG 347682 29 96.6 31 ............................T GGGTCGGTGGTGTTCATGCCGCCAGTTCCTG 347742 29 72.4 0 T............GA..A...T.T.C..A | C [347764] ========== ====== ====== ====== ============================= ================================ ================== 8 29 95.3 32 CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Left flank : AGATCACGCCCTCGAACTGCCGGCGCAGTTGTTCGGGGTACGGGCCGTACTCGCCGATCGGGAGGTACGGCTCGATGAACTCCCACTCTGCATCTGATAGTTGCACTCGCGTCACGGAACACGGTCTACCGGATCAGACCGCACCGCGAAGACAACTTCCCAGAATGATCACAACCAAATACGCGCCCTAGGGACAGTGCCTTGTTGCCCCTGTCCGTACGGGGCTAGCGGCCGTGGTGTCGGAGAACCGTGGGAGCATGCGCCTACACCGCCGCGCTCCTTGACACCTCCACAGCACCACCCCCAACGACCAGCCACCGCTACGGCACGCGCCGGCCTCCCAGCACACAACCAGGCGACCGCAGAGCCCCACCCCGTCCACGCGCTGAAGCACTACCAGCCTGCCCCAGGAAAGAAAGTGACCTAATGTCACCAATGCCCGAATCCCTGAAGCTTGCGGATTCCCGGCCACCAGCACATAACACCGCAGGTCAACAAGA # Right flank : ATATCCTGCGGGCTGTGACGGCGGTATACGTGTTGGATGGCACCCGGGTCAGGACGCTCGAAGACTTCTGGCGGCTCATGGGCGAAGCGATCAACGGCCCTGGAGGCTACTTCGGCAGGAACCTCGATGCCTTCGCTGACTGCCTCAGCGGTGGCTTCGGGCAGCCTGACGACGATGACTACACGGTCGAGTGGCGGGACCATGAGGCCTCTCGTGAGCATCTCGGATACCCGGAGACGGCTCGCCAGCTGGAACTTCGTCTCTCACGATGCCACCCCACGAATCGCCCTGCTGTCAGTGCGGACCTGGCTGCGGCACGTGATCAGCGCGGGCCGACTGTCTTCGACTGGCTGGTCCAGATCTTCGAGGATCGTGCTCCCGACGTCTTGCGGCTTCAGTAGGTCCACCAGGACCACCTGCTTTCTCACCGCTTCGGCAGACGGGTGGAGGTCCTCCCTGTGCGAGCGGGGGTCAGCTGTCCAGGGCGACCCCCGGAACCG # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 357423-357695 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP054919.1 Kitasatospora sp. NA04385 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 357423 29 100.0 32 ............................. AATCAGCTGACCGATGCCCAGCTCTCGCAGCG 357484 29 100.0 32 ............................. AGGCCGTCGGCGCCGCTGAGTTCGATCCAGCC 357545 29 96.6 32 ........................A.... TGCACGGCGACGAAATCGCCGGCCAGCACCGT 357606 29 93.1 32 ....................A...A.... GACCTCGCGGTACGCCTCGGGCTTCGACCGGT 357667 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 97.9 32 CTGCTCCCCGCGCCCGCGGGGATGGCCCC # Left flank : CGCGAACTCCTGCACAAGACTCCCGAACCCAACACCCCTGCCGCCATGCCGTGACCGAAGCCGGGCATGGCATCCCACGAAAAACGCCCCTGCACCGATCTCTGCAACTTGGACATTCCCAAAACTGCGGCCAGAGCCAAATTCAAAGAGCGCCATTAGGGTGGTCCGGCCGCCGCACGGGCGGCCTAGGGACAGTGCCTTGTTGCCCCGTGTCCGTGCGGGGCCGGCGGCTGTGGTGTCGGAGGGCCGTGGGAACATGCGCCCGCACCACCGCGCCCCTTGACACCTCCACAGCACCACCCACAACGACCGACCACCGCCACGGCACACGCCAGCCTCCCGGTACACAACCAGGCGACCACTGAGCCCCACCCCTTCCACGCGCTGAAGGACCACCAGCCCACCCTAGGAAAGAAAGTGGCCTAATGTCACCAATGCCCGAATCCTTGAAGCTGGTAAATTTCCGGCCCACCAGCACATAACACCGCAGGTCAACAAGA # Right flank : CTTACAAGTTCAGGTTGTGTAGCGGAGCAGGCTCGTTGTGGTGAGGCCGAAGTCGGAGGGAGGCGGGATCGGGACGGTGTCACCGAACTTTCCGGACCACTGCCGACGGTGCGACCCAGTGGACCGCGACCAGTGAGGTGGTGCACGCTGCCTGGAGCGCCGCCGCGGGGCCGCGTGGACCGATCTTGTGGGCGACCCGTGAGGCGAGGTAGTGCGGCGTGTTGCCGGCCAGGATCTCCGTGTCCGTCAACGAGCCCAGCTCCTCGCGGCGGGACCGGACGGCCTCCGCGTACGAGGTGTCGGTGCTGCCCGCGTAGACGCCCATGGCCCCCGGGAAGGGCTCCGGGTCGCAGCCCGCGTCCTCCAGCGCCTTCCACCGCGCGTTCCGGGAAGACCCGGTGCTGAGGGCTGATGATGTGGGACTCCCGGGGCGAGAGGCCGGAGTACCCCGCATCGAACCACTCGGGGTACTTGAGCAGCCCCGGTGCCCCGGACCAGGT # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCCGCGGGGATGGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 3501725-3501269 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP054919.1 Kitasatospora sp. NA04385 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3501724 29 100.0 32 ............................. GCGTACGCCCAGGAGCGCGTCGGCGCCGAGCG 3501663 29 96.6 32 ..................A.......... TGTGCCGCTAACGCAACACTTCGCTGTGGAAT 3501602 29 100.0 32 ............................. TCGTACCCGAACACGTCGTCGTACGCCCGCCG 3501541 29 100.0 32 ............................. CCCAAGCGCTCCAGCGGCCCCGGTGCCGACCT 3501480 29 100.0 32 ............................. ATGATGCCGGGCTTGTCCTCGGTGCCCAGGTA 3501419 29 96.6 32 ....T........................ GAGTGGACGGAGATGCCGCTGTGGCGCACCCC 3501358 29 100.0 32 ............................. TCGATCGCGACCGTGTAGGCGGAGGGCGAGTC 3501297 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 99.2 32 GTCCGACCCGGGCGCGCAGGGGCTGACCG # Left flank : ACCGTCGAGAAGCCTGGTAGGCGCGTGCGGCAGAAGGCTGGCCTGAACCGCGCCATTCTCGACGCCGCCCCCGGCGAACTGCGGCGCCAGCTCACCTACAAGACTTCCTGGTACGGCTCTGCCCTAGCGGTCCTCGACCGCTGGCACCCGTCCAGCAAGACCTGCTCTTCCTGCGGAACAGCGAGACCCAAGCTGACGCTGAGCGAGCGGGTGTTTCACTGCACCACCTGCGGCCTGGCCATCGACCGCGACCACAACGCGGCCATCAACATCGCCCGGCACGCCGCCGTCCCCCTGGTAGAGGGGGACGTTAACGCCCGCAGAAGTCCACCCCCGGCCGACAACGGTCGGCACGGACGCGCCGCAAGGCAGAAGCGGGAAGGCCCACCACCTGGTGGGCCACCTCGGCGGGAGTAATCCCCCGACAGCCCCTTACCCCGGACAACTCCACAGAGAGTCAAGGAAGCGCAAAACCCGGACAACACCCCAGCTCGCAAAGG # Right flank : GATGGTTCCCAAGACGGATGCTGTCCTGGCAGTGTGGCGTTGGGACAGCAGAATTGCTGTCCCAACGCCACACTGCGTGAGCGGTCAGGCGGTCTTCGCCTCGCTGGGGGTTTTGGTCGGCCGGGTCAGGGGCCGCATCTGGGGGACGGCGGCCTGCGGCGTGGTGCCGTCGGGGACGGCGGCGAGCGGGCGCCGGGTGTGCGGGACCAGTTCGGCGACCTTCTCGGCGGCTTCGCGGTTGAGGTCGTCGAGGACGGACTGGTAGACGTCTCGGGTGATCCGGGTGTCGGAGTGGCCGAGGGTCTCGGCGACGATCTTGGGGTCGATCTTGCCGAACAGCATGATGGTGGCAGCGCCGTGTCGGAGGTCGTGAAGGCGGATCGGGGGCAGGCCGGCGGCTTCGACGATGCGGTCGAAGAGGTCGCTGACCTTGCCCGGGTGGAGGATGGAGCCGTCTTCGTTGGTGAAGATCCGGCCGGTGTTCTGCCAGGCGTCGCCCC # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGACCCGGGCGCGCAGGGGCTGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.70,-4.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA //