Array 1 2905514-2907663 **** Predicted by CRISPRDetect 2.4 *** >NC_007645.1 Hahella chejuensis KCTC 2396, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 2905514 33 97.0 34 A................................ CACCGTACAAGCAACATGCCGTGGACTGAGCACA 2905581 33 97.0 34 G................................ GTCGCCCCACCACGGCCAGCCGAAAAGGTTAGCC 2905648 33 97.0 32 G................................ TTCAACGTCTCGCTGGTTAGCGCAATGAATAC 2905713 33 97.0 33 G................................ GACCGATATCACACAAATCACTGCACCTAACGT 2905779 33 97.0 34 A................................ GGGCGACTCGCATGTGTGGTACTACAGAGGCAAG 2905846 33 97.0 34 G................................ TCGATAACCTATAGCGGAGTGTGCGATGAGCGCA 2905913 33 97.0 32 G................................ TGAACGTGATATGCGGACTCAGAGATGATCCG 2905978 33 97.0 34 T................................ CAGCTTTGCGTTGTGGTATTTGATGATATTTTCA 2906045 33 97.0 33 G................................ TTGCTACAACAGCTGGCTGGTCCATTCTTGTTG 2906111 33 97.0 33 G................................ GTGAGGATAGACAACCTGATAGACGGTTTTTTA 2906177 33 100.0 32 ................................. GCGAAAAAATACCGGCGATACTTGGGGCCGGC 2906242 33 100.0 34 ................................. TCATCCGGCGACAGCTCCCACACCGAGAACGGCA 2906309 33 97.0 33 T................................ TGGTCGCCGCTGTTGACGTTCAGGGTGGGGACT 2906375 33 97.0 33 A................................ TTAGGTCGCCACCCTTGCGCTTACCCCACGGAC 2906441 33 97.0 33 A................................ CAAATCAGCGCGGCGGCACCATCAGGGCGAAAA 2906507 33 97.0 33 T................................ TCCGTCCAGCGCTGATTCTCGTTTCCATTTTGG 2906573 33 100.0 33 ................................. TCGGTAGACAACATCCCCAAACTATCCAATACG 2906639 33 100.0 33 ................................. TGCTATCGGGTTGTTGATAATCCTGATGTTATG 2906705 33 97.0 33 A................................ ATACAAACTCTCCGCTTGTTGCTGTAGCGCTGC 2906771 33 100.0 33 ................................. AACATGGCTTATGGCCAAGGCCTGGATGATTAT 2906837 33 97.0 33 T................................ AGATTCCCCGTTGGCTTTGGACAAATAACCCGC 2906903 33 100.0 34 ................................. GGTAGTGTAAACGTCCTTGCCACCTTTCTAGGTA 2906970 33 97.0 33 T................................ ACTGAGAGCGACATAGCGGACATGCTCGGTTAC 2907036 33 97.0 32 A................................ ACGGTTACGGATGTAAGCTCACCTGCAATTCT 2907101 33 100.0 32 ................................. ATATCGCCGGACTGCTCGCCCAGCGTCAGGTG 2907166 33 100.0 33 ................................. AATAAATGACGCGTAAAGTTTGTCAGGCACCTG 2907232 33 97.0 33 A................................ GTAACCTGTCATCGTCACCGATCCGTCACAGCG 2907298 33 97.0 34 A................................ GCCGCGCAAGTAGTTCCCATATTGGCCCGTCATG 2907365 33 97.0 32 G................................ TCGGCCTCGCTCATGTCAGGCGGGAAATAGTC 2907430 33 100.0 33 ................................. GGCAAGTTTTCGTCTATCCAGTCCTGATCAAAC 2907496 33 97.0 34 T................................ CGGCCTTCCGGAGGATTACGAGGGGCGAGGATGA 2907563 33 97.0 35 T................................ GTAACGTAAGCCCGCACCCATAGAGCTAGGCAACG 2907631 33 90.9 0 G........A............G.......... | ========== ====== ====== ====== ================================= =================================== ================== 33 33 97.6 33 CGTCGCCTCCCACGCGGAGGCGTGGATTGAAAC # Left flank : GTTCAACAAGAAAGGCATGCCCATCGTAGAAACCCCCAAAGAAGCCCTCGACTTCTTCATGGAATGCGCCCTCGACGCACTAGTCATCGACGGCTGCCTGATCGAAAAAACCGCCGTCGCCCAACAGACCCGCAAAGTGGACGAGAAAAAAGAGTGGGAAAAAGGCCTGGGCAGCCTGTACCCGGAAAATGTGGGGATTTGATCTAATAAACCGCTATTGAGCCTCGACAAAAATCCCCTGCGTAAGCGGGGGATTGCTATCTATGCTGTTAAGCTATTTCCCCACAAGCGCAGACTCATTTCTTTCCTATACTTAAACCACACAGCGCTAACCTCAGGCTCCCATAAAATCCCTGGGAGGTTAGCGATCATGCAACACACTGAAAAGAAAAAGCTTTTCACCGCAGTCAGAAAAAAGCCGCTCTTTAACATCACAAAACCCCCCAGGTTAGCGCAAACACGCCATTAACACCTTTGGAATCATTGGATTATAGTTAGAC # Right flank : CCCAGAGGGTAGTGCAATGAAATACGAATTCGATGGTTCAAGCGCGCTGAAAATGCTTTTACAAAAGCAGGAATGACCATAGACGAAATCAGACGGGATCACCCCGATGATTTCGTGCCCAACCTTTTAGGTTTTAACGATCTGTCTCCGGGTTCGTTTATTCGTTGCATTCGTAGCGCGAGACTGGTAACGGGTGACAAGCGTCCTGTTGAAGCCAGCCCGCATACATTACCCTACATCAGTAGAGAGTCAGCTATACGTCACTTGCAGATGAATGGTTATCACAAGAAAGCGGAGAGGCTCGCCAAGCTAACCATGAAGGAATTTGACTTATTATGATCAAACAATTGGTGAGGCCAGTATTAACAGGCAAAGGACCGAACTTTTCTGATCTGACCGCAAAGGAATGCGGTATTGGTGACTTCAGGTTGCAGTATAAGCTACCAGGCAACTCTATTTATACAGGGAGACCTAGGAAGCCCACGCCTGAGAGAGTTAAC # Questionable array : NO Score: 8.50 # Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.36, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGTCGCCTCCCACGCGGAGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CGTCGCCTCCCTCGCGGAGGCGTGGATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.70,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.15,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 2917500-2921171 **** Predicted by CRISPRDetect 2.4 *** >NC_007645.1 Hahella chejuensis KCTC 2396, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 2917500 33 97.0 34 A................................ ATGTGCGGATCTGAAGCACCGTATCGCCGTGCTG 2917567 33 100.0 33 ................................. CAGCGAAAGTCGATCTCGGATACAATCAATGAA 2917633 33 100.0 34 ................................. ACTAATAAACTTGATGATTGGGAAACTTACACAA 2917700 33 100.0 34 ................................. ACTAGAGCACGGCTTCACTAGAGCACGGCTTCAC 2917767 33 97.0 33 T................................ CTGAGAAGCCGGTCAAGAAATCCGCCAAGAAAG 2917833 33 97.0 34 A................................ TTCATGTACAAGCGCGGTCCGCTAGTCACCCCGA 2917900 33 97.0 33 C................................ TGGTCCATCTGTGCGGCCATGGCGAGCATCTCA 2917966 33 100.0 34 ................................. TTCAGCTCCAAAGCCGTATTCGTTTCTCATTTAT 2918033 33 97.0 34 C................................ CGGTATTTGCGCAGAATACCAAGTCACCAACTTA 2918100 33 100.0 33 ................................. GTGTCAGCCTGGGCAGGTCAACGCGGTGCCAGC 2918166 33 97.0 33 T................................ ATTTACAGGCCCTTTTGATACTGGGTGCGAAAA 2918232 33 97.0 32 A................................ AGTCAGGCCGGCCCGCGATGGATGATGCTTTA 2918297 33 97.0 33 A................................ TTGACGGCGCTATCCTGTGCGCGGCGGGCAAGG 2918363 33 97.0 32 C................................ ATCATGAAAAAGAAGATGGTAGAGGATCTCTA 2918428 33 97.0 34 T................................ AGCGAATAACCATGCAGGTCAGAGTCCTTAAGCG 2918495 33 97.0 35 A................................ TGTGTCCGCATGAGCGAGACAGTATTCATAGACCA 2918563 33 100.0 33 ................................. ACCGCCAACCAAAGTATTAGTCGACGACATAAC 2918629 33 97.0 33 C................................ TTCTAACTTTATTTACAACAGACGTAAATTGAT 2918695 33 97.0 29 C................................ ACCGCAAGCAAGCTATCAACTTTAGAAAA 2918757 33 97.0 33 T................................ CGGTGAGCCTGTCACAGATACCTTGGTTATTGC 2918823 33 97.0 33 C................................ GCGAATGTTTATTTCGAGGCGGGAGAGATCCCT 2918889 33 100.0 33 ................................. TAACAATCAGGGTTGTTGACAAAGTGAACAAAA 2918955 33 97.0 33 T................................ CCCTTGGCAACAAGTGGAGACGAATTACCATAA 2919021 33 97.0 33 C................................ GATCCAGCGGCGGGGAGATACACAATTGTCTCG 2919087 33 97.0 34 C................................ AATCGTAATAGCGGCGGGTTTGGCCGCTTATATA 2919154 33 97.0 33 A................................ GGCGACAGTGTGTGTAAGGTGGGCGTTTTGTTG 2919220 33 97.0 34 T................................ CTTTTGGGGGTGGGAATGATCGCGCTCCCGTATG 2919287 33 97.0 33 C................................ GACTGGTCTGCGACCATTGGCGGCATTAAGTTT 2919353 33 100.0 33 ................................. GACTGGTCTGCGACCATTGGCGGCATTAAGTTT 2919419 33 100.0 32 ................................. TCCGATCTTGCGATCAGTTATATGGATTAGCT 2919484 33 97.0 33 C................................ CTGCGATTAAAGAAGGCCGGACCGTTGTTACTA 2919550 33 97.0 35 A................................ ATGATGATCCACAACCCGTCAACCATTGCGTGGGG 2919618 33 97.0 32 C................................ CGAAGCTGGCGCGGGAGCTGATTACGGCCCAT 2919683 33 100.0 32 ................................. AGGATTTCAGGCATAAGGAAAATTCCCCCTCT 2919748 33 97.0 33 C................................ CAAACACTGAGAAAAGCCCTAACGCAGCTAAAT 2919814 33 97.0 35 C................................ TGACCCTGATCCTTGTATTGCCGTTATCAACGAAA 2919882 33 100.0 33 ................................. GAAGGCTCAATACGTAACCCTAGGTCAATCGTT 2919948 33 97.0 32 C................................ AGGGGAAAAAGAAAAAACAAACAGCGGTGAAA 2920013 33 97.0 33 A................................ ATGAGACCACCTCTATCTTCGAGCCGTAGAATT 2920079 33 97.0 32 T................................ GCCCCTTAGCTCTACACCGGGGCGATCAATCA 2920144 33 97.0 33 C................................ GAATGAAAGCTATTGACGGACTGGGTAGAGCAT 2920210 33 97.0 34 T................................ ACTGCTCTGCGACCCCGGCATCAATGGATATCGG 2920277 33 97.0 33 A................................ GACTCAGGAGGTCATAAAGACAATGCAAAAAAA 2920343 33 100.0 33 ................................. CTGCTCTTTGTCTGTTAGTCGAACGGTAGATGG 2920409 33 97.0 34 C................................ TTAAGCATCGAGCGAAGCGAGCTGCCGAAGCGCA 2920476 33 100.0 33 ................................. GCGTCCGTCGATCTGGATCTACCTAACACCGAG 2920542 33 97.0 34 C................................ TGCAAGCGCCGGAAGAGAAAACCGTCGCAGCCGG 2920609 33 100.0 33 ................................. AGGAATTTGAACCGCGTGAAAAATGGGAACCGT 2920675 33 97.0 32 A................................ TGCAATTGCATTAACAGCTGTTGAAAGCATTT 2920740 33 100.0 33 ................................. CATGCATGGCATTGCGCCTCAGACGGTCCACCA 2920806 33 100.0 34 ................................. ATCCATTTAGATACGGTTGTGGTGTGAACACCCA 2920873 33 97.0 34 A................................ GGCTCAGCGCCCTTAACCCTTTTTATTACAAGTG 2920940 33 97.0 33 A................................ AGCATAAATTCCACCGGCATTAACATGAGTCCA 2921006 33 100.0 34 ................................. GTAAAGTCTAATGATTTGGTCGCTTTTATTCGGG 2921073 33 100.0 33 ................................. CATGCCAAGGATACCTCCAACATTGTCCCGATG 2921139 33 84.8 0 A..................ATA...G....... | ========== ====== ====== ====== ================================= =================================== ================== 56 33 97.7 33 GGTCGCCTCCCATGCGGAGGCGTGGATTGAAAC # Left flank : GCACTATCCTCCGTTCTCCACAAGGTGAGGCCATGTTGGTGTTGATAACCTATGACGTCAGTGTAATAACCTCAGAAGGACAACGGCGGTTGCGCCATATCGCCAAGGTATGTGTGGATTACGGCATGAGAGTGCAAAACTCCGTATTCGAATGCGAAGTCGACCCGGCGCAATTCACCTTTCTCAAGCAGAAACTGCTGGATATCTATCACCCAGACGAAGACAGCCTGCGGTTTTATTTCCTCGGCAAAAAAGGCCGCCAGAAAGTCGAACACTACGGCGCCAAACCCACCCCGGACATTTTCAGAGACTCCCTGATCATCTAGCGCTAACCCCAGGCTCCCATAAAATCCCTGGGAGGTTAGCGCAGTTATAGGTATATGAAAAATAAACAGTTTAATCCCCAGAGTTAAAACCAACGCTCTTTAACAACCAGGAAACGCACAGGTTAGCGCAAAAGCGCTATTAACACGCCTGAAAACATCGAGTTATAGTAAGGC # Right flank : CTGAGCCTCCCCTAAAAAATCCAAGCATTTTAAAGAGAGGCATTAATATGAAATGGCAAAAACGCCGAGAGAAGCGGCGCGGTACTTAGTAGTTATTCTCTTATAAGAATGGCGCAGAAACGTTTGAATGTGCGGACTGTTGGGAGGTGTTGAAGGATGGCAACATCATTGCCATATTTATAAATGACTTTGTTGAACATACCCGACGTCGCGAACTCAATCTTAATCAAGGAAACGGGCAGGTATCGCCCGTCATTCATTATTAACATGGCAATGATACTGGCATGTTAATAACCAGGCGCATGGACGCGCCTGCGCGGCGACAAGCCGCGGGAGACAGGGTCTGACATGTGCAGGCCCTGTCGTTGCAGACAAATAGAAGGAAGCTATTTGTCTGCCGGATTAATAGTAGCGAGAGAAGTTTATTCGTCATCATCCCAAGGATATGGTAAAGCGCTCACGGCATCTTCAAGCTTCATATAAGCGAAGATGGTTTCATT # Questionable array : NO Score: 8.56 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTCGCCTCCCATGCGGAGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CGTCGCCTCCCTCGCGGAGGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.90,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //