Array 1 458111-457715 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JAFIRK010000001.1 Proteus mirabilis strain SCQJJJ3 NODE_1_length_515132_cov_155.768392, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                  	Insertion/Deletion
==========	======	======	======	=============================	=================================	==================
    458110	    29	  89.7	    31	....................A......GA	CCGCCACCTATCGCAGCGCCCCATGGACCAC  	
    458050	    29	  96.6	    32	....................A........	TTGTATCGCTTTCACTTTGTCATTCTGGCTTA 	
    457989	    29	 100.0	    33	.............................	AGGGTCTGGTACCAAAATGATCCGCAACTACGC	
    457927	    29	  96.6	    32	....................A........	TTGTATCGCTTTCACTTTGTCATTCTGGCTTA 	
    457866	    29	 100.0	    33	.............................	AGGGTCTGGTACCAAAATGATCCGCAACTACGC	
    457804	    29	 100.0	    32	.............................	AGACTGCAGACGCGCACCGGTAGCAGTTTCTA 	
    457743	    29	  86.2	     0	.......................A..TTA	|                                	
==========	======	======	======	=============================	=================================	==================
         7	    29	  95.6	    32	GTGTTCCCCGTGTATACGGGGATGAACCG	                                 	       

# Left flank :   AAACACTCAATAAACTTATCCCTTTAATTGAAGAAGTTCTTTCTGCGGGAGAAATTACTCCACCTGAACCACCTATTGATGCTCAACCCCCTGCAATTCCTCAAGCTCACCCTTTTGGCGATGAAGGTCATAGAGAAAAATAGTAATGAGTATGATTGTTGTTGTAACTGAAGCTGTTCCTCCTCGATTAAGAGGGCGACTTGCTGTGTGGCTATTAGAAGTGAGAGCGGGTGTATATGTTGGTAATGTTTCAGCTCGAATAAGAGAAATGATTTGGCAACAAATTAATGAGTTTGCTGAAGATGGTAATGTCGTTATGGCATGGGGAACTAATACTGAGTCAGGTTTTGATTTTCAAACCTATGGTGAGAATCGACGAGAGCCTATTGATTTTGATGGCTTGAGATTAGTGTTATTTAAGCCATATAAAGAAGATGTATAATCTTCGGTAGAAATAAATATATTTTTTTATTTAATAAAATCAAGTGAATATAATTAGA
# Right flank :  TCATCAAGTCTTCTCTCTTACTTGGTATTTATGCAGAGATGAATTTTTATATTTATTATCTGAATAATAATGCTATTATCCTAAGTGAATATTCACTATGTGTATATTTTTGTGCCTAATTAATTATAAAAATAGGTTTAACATCATAATCACTAAGGAAGAAAGAAGATGTCTTTAGCTATTCGATATCTTGCGTTATTACCACTTTTCGTTATTACTGCTTGCCAACAGCCTGTAAATTATAATCCACCAGCAACTCAAGTGGCTCAAGCTCAGCCTGCTATTGTCAATAATTCATGGATTGAAATTTCACGAAGCGCACTCGACTTTAATGTAAAAAAAGTCCAATCATTATTAGGTAAGCAATCCTCTCTTTGTGCAGTGTTAAAAGGAGATGCTTATGGGCATGATTTATCGTTAGTTGCCCCAATTATGATAGAAAATAATGTGCAATGTATTGGTGTAACAAATAACCAAGAATTAAAAGAAGTACGTGATTT

# Questionable array : NO	 Score: 5.69
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.85,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTGTTCCCCGTGTATACGGGGATGAACCG
# Alternate repeat :   GTGTTCCCCGTGTATACGGGAATGAACCG

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [7,5] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTGTTCCCCGTGTATACGGGGATGAACCG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-9.70,-10.30] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [4-5] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [73.3-85.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.78,5.14   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
//


Array 2 467602-467024 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JAFIRK010000001.1 Proteus mirabilis strain SCQJJJ3 NODE_1_length_515132_cov_155.768392, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	=============================	================================	==================
    467601	    29	 100.0	    32	.............................	AGTTTTGACTCAATTAACGGGATGGTTCCCTA	
    467540	    29	 100.0	    32	.............................	AAATCACCTAGAATACTAATAACGCCTGTATG	
    467479	    29	 100.0	    32	.............................	CATCATTAGGTGATAACACAAACGTTCGCATC	
    467418	    29	 100.0	    32	.............................	AAATAGAACGTATCGCAGCTGTTATTTCTGTT	
    467357	    29	 100.0	    32	.............................	TATCGAATATTCACAGGTTGCATTGATTGCAG	
    467296	    29	 100.0	    32	.............................	GTGAAATGATTGTTCGCAATGATATCCGAGGC	
    467235	    29	 100.0	    32	.............................	CATCTTCAAAGACTTTCTGACTGTATGGCTGA	
    467174	    29	 100.0	    32	.............................	CGAACGTGATGACCAAACACATGTACACACCA	
    467113	    29	 100.0	    32	.............................	AATGGGCTGAGGACGAGGCAATGAACAATGAG	
    467052	    29	  96.6	     0	..........................T..	|                               	
==========	======	======	======	=============================	================================	==================
        10	    29	  99.7	    32	GTGTTCCCCGTATGCACGGGGATGAACCG	                                	       

# Left flank :   TCCCAATGCAAAACCTGCGCTTGATTGTCCCGTGGTATTTCCTTATGCACCTAATGCCGTTTTAGTCGGTTTTCTGAGTAGTTTTGCAGCGGGTGTCATTGGCATGTTTATTCTTTATGCTTTAGATTGGACTGTGATTATACCCGGGGTGGTACCTCATTTCTTTGTGGGTGCAACTGCAGGCGTATTTGGTAACGCCACAGGGGGACGCCGAGGTGCTATTTTAGGTGCTTTTGCTCAAGGTTTATTGATTACTTTCTTACCCGTATTTTTATTACCTGTACTTGGTGATATTGGTATTGCCAATACCACATTTAGTGATGCAGACTTCGGTGTGATTGGTATTCTATTAGGGATTATTGTTCGTTAATACTACCGACGTTGATATTACTTATTAGTGGAATTTTAATAAATGCCCGACTTTTTAACCCGTCGGGCATTTTTTTGGTAGAAATAGTGTATTTAAATTTTCTTTATAGATTCAATCTATTATGATTAGA
# Right flank :  ATCATCTTGTGCATTTTTATTATGTACTGTTTTCTAAATATTCTAAGAGTTATGTTGTGATATTAAGTGGGCAATAAATTTTGAAAAGCCACTATAGTCAATTCATATATGTTGTAAAATAGCAACATATATGAAGTTTTGATAAAGTTTAATAAGAAGTAGATCTCTTTTTAAACATTATTTAGAGAAAAAAATAGCTATTAATTGTAATATCTTCCTGTGGTAAGAGAACGAGTTAAGCGAAATGGATAAAGATTATTATAGCTACTGGGGCAAGTTTAAATCAGAAAATAATCATGAATACTATCATTTGCTTCCATATCATAGTTTGGACGTGGCTGCTGTAGGTATGATATTGTTTCCAGAAAACTCAAAAATTATAAAAGATATTTCTACTTTTTTACAAATACACCCAAAAGAATTTTCTAAACTGTTTTTATTATTGCTTTCTCTTCACGATGTTGGCAAATTTTCTTCTTCATTTCAATATATTAATCCAA

# Questionable array : NO	 Score: 6.25
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTGTTCCCCGTATGCACGGGGATGAACCG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [6,5] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTGTTCCCCGTATGCACGGGGATGAACCG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-9.70,-10.30] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [1-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [75.0-81.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.37,5.28   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
//