Array 1 458111-457715 **** Predicted by CRISPRDetect 2.4 ***
>NZ_JAFIRK010000001.1 Proteus mirabilis strain SCQJJJ3 NODE_1_length_515132_cov_155.768392, whole genome shotgun sequence Array_Orientation: Reverse
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================= ================================= ==================
458110 29 89.7 31 ....................A......GA CCGCCACCTATCGCAGCGCCCCATGGACCAC
458050 29 96.6 32 ....................A........ TTGTATCGCTTTCACTTTGTCATTCTGGCTTA
457989 29 100.0 33 ............................. AGGGTCTGGTACCAAAATGATCCGCAACTACGC
457927 29 96.6 32 ....................A........ TTGTATCGCTTTCACTTTGTCATTCTGGCTTA
457866 29 100.0 33 ............................. AGGGTCTGGTACCAAAATGATCCGCAACTACGC
457804 29 100.0 32 ............................. AGACTGCAGACGCGCACCGGTAGCAGTTTCTA
457743 29 86.2 0 .......................A..TTA |
========== ====== ====== ====== ============================= ================================= ==================
7 29 95.6 32 GTGTTCCCCGTGTATACGGGGATGAACCG
# Left flank : AAACACTCAATAAACTTATCCCTTTAATTGAAGAAGTTCTTTCTGCGGGAGAAATTACTCCACCTGAACCACCTATTGATGCTCAACCCCCTGCAATTCCTCAAGCTCACCCTTTTGGCGATGAAGGTCATAGAGAAAAATAGTAATGAGTATGATTGTTGTTGTAACTGAAGCTGTTCCTCCTCGATTAAGAGGGCGACTTGCTGTGTGGCTATTAGAAGTGAGAGCGGGTGTATATGTTGGTAATGTTTCAGCTCGAATAAGAGAAATGATTTGGCAACAAATTAATGAGTTTGCTGAAGATGGTAATGTCGTTATGGCATGGGGAACTAATACTGAGTCAGGTTTTGATTTTCAAACCTATGGTGAGAATCGACGAGAGCCTATTGATTTTGATGGCTTGAGATTAGTGTTATTTAAGCCATATAAAGAAGATGTATAATCTTCGGTAGAAATAAATATATTTTTTTATTTAATAAAATCAAGTGAATATAATTAGA
# Right flank : TCATCAAGTCTTCTCTCTTACTTGGTATTTATGCAGAGATGAATTTTTATATTTATTATCTGAATAATAATGCTATTATCCTAAGTGAATATTCACTATGTGTATATTTTTGTGCCTAATTAATTATAAAAATAGGTTTAACATCATAATCACTAAGGAAGAAAGAAGATGTCTTTAGCTATTCGATATCTTGCGTTATTACCACTTTTCGTTATTACTGCTTGCCAACAGCCTGTAAATTATAATCCACCAGCAACTCAAGTGGCTCAAGCTCAGCCTGCTATTGTCAATAATTCATGGATTGAAATTTCACGAAGCGCACTCGACTTTAATGTAAAAAAAGTCCAATCATTATTAGGTAAGCAATCCTCTCTTTGTGCAGTGTTAAAAGGAGATGCTTATGGGCATGATTTATCGTTAGTTGCCCCAATTATGATAGAAAATAATGTGCAATGTATTGGTGTAACAAATAACCAAGAATTAAAAGAAGTACGTGATTT
# Questionable array : NO Score: 5.69
# Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.85,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTGTTCCCCGTGTATACGGGGATGAACCG
# Alternate repeat : GTGTTCCCCGTGTATACGGGAATGAACCG
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37
# Reference repeat match prediction: R [matched GTGTTCCCCGTGTATACGGGGATGAACCG with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37
# Array degeneracy analysis prediction: F [4-5] Score: 0.41/0.41
# AT richness analysis in flanks prediction: R [73.3-85.0]%AT Score: 0.27/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: R [0.78,5.14 Confidence: HIGH]
# Array family : I-E [Matched known repeat from this family],
//
Array 2 467602-467024 **** Predicted by CRISPRDetect 2.4 ***
>NZ_JAFIRK010000001.1 Proteus mirabilis strain SCQJJJ3 NODE_1_length_515132_cov_155.768392, whole genome shotgun sequence Array_Orientation: Reverse
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================= ================================ ==================
467601 29 100.0 32 ............................. AGTTTTGACTCAATTAACGGGATGGTTCCCTA
467540 29 100.0 32 ............................. AAATCACCTAGAATACTAATAACGCCTGTATG
467479 29 100.0 32 ............................. CATCATTAGGTGATAACACAAACGTTCGCATC
467418 29 100.0 32 ............................. AAATAGAACGTATCGCAGCTGTTATTTCTGTT
467357 29 100.0 32 ............................. TATCGAATATTCACAGGTTGCATTGATTGCAG
467296 29 100.0 32 ............................. GTGAAATGATTGTTCGCAATGATATCCGAGGC
467235 29 100.0 32 ............................. CATCTTCAAAGACTTTCTGACTGTATGGCTGA
467174 29 100.0 32 ............................. CGAACGTGATGACCAAACACATGTACACACCA
467113 29 100.0 32 ............................. AATGGGCTGAGGACGAGGCAATGAACAATGAG
467052 29 96.6 0 ..........................T.. |
========== ====== ====== ====== ============================= ================================ ==================
10 29 99.7 32 GTGTTCCCCGTATGCACGGGGATGAACCG
# Left flank : TCCCAATGCAAAACCTGCGCTTGATTGTCCCGTGGTATTTCCTTATGCACCTAATGCCGTTTTAGTCGGTTTTCTGAGTAGTTTTGCAGCGGGTGTCATTGGCATGTTTATTCTTTATGCTTTAGATTGGACTGTGATTATACCCGGGGTGGTACCTCATTTCTTTGTGGGTGCAACTGCAGGCGTATTTGGTAACGCCACAGGGGGACGCCGAGGTGCTATTTTAGGTGCTTTTGCTCAAGGTTTATTGATTACTTTCTTACCCGTATTTTTATTACCTGTACTTGGTGATATTGGTATTGCCAATACCACATTTAGTGATGCAGACTTCGGTGTGATTGGTATTCTATTAGGGATTATTGTTCGTTAATACTACCGACGTTGATATTACTTATTAGTGGAATTTTAATAAATGCCCGACTTTTTAACCCGTCGGGCATTTTTTTGGTAGAAATAGTGTATTTAAATTTTCTTTATAGATTCAATCTATTATGATTAGA
# Right flank : ATCATCTTGTGCATTTTTATTATGTACTGTTTTCTAAATATTCTAAGAGTTATGTTGTGATATTAAGTGGGCAATAAATTTTGAAAAGCCACTATAGTCAATTCATATATGTTGTAAAATAGCAACATATATGAAGTTTTGATAAAGTTTAATAAGAAGTAGATCTCTTTTTAAACATTATTTAGAGAAAAAAATAGCTATTAATTGTAATATCTTCCTGTGGTAAGAGAACGAGTTAAGCGAAATGGATAAAGATTATTATAGCTACTGGGGCAAGTTTAAATCAGAAAATAATCATGAATACTATCATTTGCTTCCATATCATAGTTTGGACGTGGCTGCTGTAGGTATGATATTGTTTCCAGAAAACTCAAAAATTATAAAAGATATTTCTACTTTTTTACAAATACACCCAAAAGAATTTTCTAAACTGTTTTTATTATTGCTTTCTCTTCACGATGTTGGCAAATTTTCTTCTTCATTTCAATATATTAATCCAA
# Questionable array : NO Score: 6.25
# Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTGTTCCCCGTATGCACGGGGATGAACCG
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37
# Reference repeat match prediction: R [matched GTGTTCCCCGTATGCACGGGGATGAACCG with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37
# Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41
# AT richness analysis in flanks prediction: NA [75.0-81.7]%AT Score: 0/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: R [0.37,5.28 Confidence: HIGH]
# Array family : I-E [Matched known repeat from this family],
//