Array 1 90281-90982 **** Predicted by CRISPRDetect 2.4 *** >NZ_VMHM01000006.1 Gilliamella apicola strain W8127 NODE_6_length_176432_cov_252.210749, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 90281 29 100.0 32 ............................. CAGATGGGATTAGACGAGTCTGAACGAGACGA 90342 29 100.0 33 ............................. TTAGAAAAATGGCTACTGACGGCAAATTATCAA 90404 29 100.0 32 ............................. TCGTACGACACGATATTATCGATATCTGAAAA 90465 29 100.0 32 ............................. CATAACCAATCGCTAATTTTGATTTCCTGTGC 90526 29 100.0 32 ............................. TCATGGATTTTGTGGACCATGAGAATAAATAT 90587 29 100.0 32 ............................. CTCAGCGAGCTGTAGGTTTAAAAGCCAATCTT 90648 29 100.0 32 ............................. TTACGAAAAATACGAACGAGGGATTGAAGAGG 90709 29 100.0 32 ............................. ACATAATTTTTTTTCCTGTTCTCGACGTTTAA 90770 29 100.0 32 ............................. GAAACATTTAATTGGGTCGTCGCACCCAACAT 90831 29 100.0 33 ............................. CTATAATAATGGTAGCACAGCTAATGCGTACGT 90893 29 96.6 32 ..............T.............. TATTAGTGAGAACTAAAGATGGACGTAACATG 90954 29 75.9 0 AC...T.......A..........T.TA. | ========== ====== ====== ====== ============================= ================================= ================== 12 29 97.7 32 GTGTTCCCTGTATGCACAGGGATAAACCG # Left flank : GCTTATTGAAGAAGTTTTGTCCGCTGGTGGTATAGAACCGCCTCTACAACCTGATTATGTCCTGCCACCCGCTATCCCAGAACCTCAATCTTTAGCCGATAGTGGCTTTAGGAGCCGCTAATATGAGTATGTGTGTTGTGGTAACTGAAAATGTTCCACCTCGATTACGTGGTCGTTTAGCAATTTGGTTACTTGAAATTAGAGCCGGAGTTTATATCGGTGACATATCAAAACCAATAAGAGAAATGATATGGCAACAAATTGTTAAACTTGCAGAAGAAGGCAATGTAGTCCTTGCTTGGGCGACTAATACAGAATCAGGATTTGACTTCCAAACTTATGGCGCTAATAGAAGGGTTCCGGTAGATTTAGATGGACTAAGATTAGTCTCTTTTTTACCTATTGAAAATCAATAGGTTAACGTTCTTTAAAAAATTAAAAAAATTGGTAGATTTTTGGGGTACCAATAAATCTAAATAAAACAATTATATATATTTAGA # Right flank : GTTAGATTAATTAGGTAAAGTAATAATAACGTTTTAACTTTATTTCTTTACCAATATCGGCATATATTCACTTTTATATTTTTATGAATATAAAAATCGAATGAGATTTATTAAAAATCTTAAATAGTTATGAAGTTCATTTTAAAACATGAATATTGAAAGTAACTGTTAACTAAACTAATAATCAAAAATAGCGTACAATAGAGCGTTATTAAACATATGATCATCATAAATAGTTTAGGAATTTAGCATGACAGGCAAATTTATTGTCATTGAAGGTCTTGAAGGTGCGGGTAAAACGACAGCAGTTAATACCGTTGCTCGTATTTTGAATCAATATTACATTTGCGATTTACAATTTACTCGTGAACCAGGTGGTACACCCATTGCTGAAGCATTACGCAATCTTATTAAAAATGGTTTGGATGATGAACCTTTGACGGATAAAGCTGAATTGTTGATGTTATATGCCGCTCGTATTCAATTGATTGATAATGTGA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATGCACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTATGCACGGGGATAAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 136408-135830 **** Predicted by CRISPRDetect 2.4 *** >NZ_VMHM01000007.1 Gilliamella apicola strain W8127 NODE_7_length_160289_cov_244.269506, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 136407 29 96.6 32 ............C................ ACGTCATATTCGTATTGTGCTCTATCCGCAAT 136346 29 96.6 32 ............C................ CGGCACGAAATAGAATAAATATAGTTTTTGAT 136285 29 100.0 32 ............................. GCTGTTGGCGGCCGTTGGTCAGGGAACATGGT 136224 29 100.0 32 ............................. TTCTTTACTATTGATGAATATAGTAATTATAT 136163 29 100.0 32 ............................. TTAAAGAGTTCGCGAAATCTGTTTTTAACACA 136102 29 100.0 32 ............................. TTGTTGCTATGAAAATGTATGTACCTAAAGCG 136041 29 100.0 32 ............................. TGTAATCTTCATAATAGCCTGAGTGCTCGTAT 135980 29 100.0 32 ............................. GCCACCTCTATTCGGGAGAACGACGACGGAAC 135919 29 100.0 32 ............................. CGCAAAGCATGCTTGAGCAAATGGCTGAGATA 135858 29 89.7 0 ..........................ATA | ========== ====== ====== ====== ============================= ================================ ================== 10 29 98.3 32 ATGTTCCCTGTATACACAGGGATAAACCG # Left flank : TGCGCTAACATCAACTTTATAGCATTAATTATGCCAATAATAAAAATACTCGTTAAATCAAAACAATTTGCTCAAAAAACAAACCAAAAAAGTTGGTAAAAATTTTAATGTACTTACTTTTAATTATAAAACAAAAAGTTATAATTAGAGTATTCCCTGTATATACAGGGATAAACCGCACCACGTAATATGTTCACCGTTTTGACAAACATGTTCCCTGTATGCACAGGGATAAATCGGCGGGCGTTAATATTACATAGCATTTTTTGCTATTCAAAAATCGCAATTCTATATTTTATTGTTAACCATTTTTTAACTGCATGAAAAATATAAATTTATCGGTAGAATCCCGTAGAACCTAATTTTAATTTCCATTAGTTTTAATTAATCAAATAAAAACATAGTGTTATATATTCGGATTTTAATGAAAAATATCCCAAAAAATCGGTAGAAATTTGACAGACAATATTTTAATTATAAAACAATATGTTATAATTGGT # Right flank : AAAATATTACAAACCGCCCTAGTGGCGGTTTTTTATTGCCAAAATCCTTTAAATAACATACCATTGCAAAAAAATATAAAGATCAAGGAGATGGTGTGAAAAAATTATTATTATTAACATGTTTAGGTTTTATTTTCTCTGGTTGTAGTGTTCATCATCAATTTAGTGACAGGTTGTCTTATCAATCATTAAAACAAATAAAATCAGAGATACATTTAACTCAAAAACAAAGCTTAGATATTACATGGATTCCTGGTGATTTTACGTCACGAATTGATATACAAGGGGCATCAGGGTTTGTTGGTGCTGGAACTCGTACTAGAATTCCGATCGGCATTGGTCTTTCATCAAGAATTGAAGAAGCAATTAGCACGTATGCAGATTTAAATTCTGACGGTAGAAAGTTAACAATAATAGTCAATGATGCTAAAACAAAATTCACTTATGGAGCAACGAATATTGATAGTGCTAGCGTATATTTAATTGTAACATTTGAATTA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCTGTATACACAGGGATAAACCG # Alternate repeat : ATGTTCCCTGTACACACAGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: R [matched GTGTTCCCTATACACATAGGGATAAACCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 93921-94193 **** Predicted by CRISPRDetect 2.4 *** >NZ_VMHM01000001.1 Gilliamella apicola strain W8127 NODE_1_length_340859_cov_204.355367, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 93921 29 93.1 32 ............TG............... TCTCACCGAGAGGCTAAAGAGAAGCTTGAAAC 93982 29 96.6 32 A............................ ATAGAGTCGAAACGTCAATTTTTTCACCCTCT 94043 29 100.0 32 ............................. AAAATTCTAGTAATAAAAAAGTTAATATTATT 94104 29 100.0 32 ............................. ATAAATTCTAGAATCAATATTAATGTTTTGCT 94165 29 96.6 0 ..........................T.. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 97.3 32 GTGTTCCCTGTACACACAGGGATAAACCG # Left flank : TCAGTATAAAAATCAATAAATAATTTATTTTAACTCTATGGTGATAAACAAAATACCATGTTGAGCTAACATAAATGTTTACTTTTCATATTGAGTAATAGATCATAAATAACAGTGCTTATAAAATTATTTTCATTCAAAAAAATATATTGGATTACTCAAAATCATAGAAATGTACCTACAAAAAACGAGTACTTGAGATTAATTTGTGAAAATTTTAAAACCAAGCTAAATCAGCAAATAACTTAAAAAGTAGAGTTATTTTGATAACAGTAAAGTATTAAAAACATCTCAATAAAAATTACTGTTTTTTAACTACATGAAAAATATAAATTTATCGGTAGAATTCTGTAGAATCGATTTTTAATTTTCATCAATTTTAATTAATTAAATAAAAACATAGTGTTATAAAATAATGATTTTGATAAAAAATAGCCTAAAAAATCGGTAGAAATTTGGTGGTCAATATTTTAATTATAAAACAGTATGTTATAATTGGT # Right flank : GGCGATGCGTCAATATTACATAGCATTTTTTACTATTCAAATAATCGCAATTCTATATTTCATTGTTTACCATTTATTTAATTGCATGAAAAATATGAATTTATTGGTATAATTCCGTAGAATCGAATTTTAATTTCCATCAATTTTAATTAATTAAATAAAAACATAGTGTTATAAATATAGATTTTGGTAAAAAATAGCCTAAAAAATCGGTAGAAATTTGGTTACCAATATTTTAATTATAAAACAGTATGTTATAATTGGGGTGTTCCCTGTATACACAGGGATAAACCGTAGACAGTGGCGCTATGACGTATGAAGAGGGCGTGTTCCCTGTATACACAGGGATAAACCGACAAACATTAGCTGAGGGAGCGTTATATAGCTGTGTTCCCTGTATACACAGGGATAAACCGTGTCATTAGTACTATAGCCTAAATCTCGCATTGTGTTCCCTGTATACACAGGGATAAACCATAATTGTTCAAATAAATGTTTAA # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTACACACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.00%AT] # Reference repeat match prediction: F [matched GTGTTCCCTATACACATAGGGATAAACCG with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.80,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 94458-95155 **** Predicted by CRISPRDetect 2.4 *** >NZ_VMHM01000001.1 Gilliamella apicola strain W8127 NODE_1_length_340859_cov_204.355367, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ==================================== ================== 94458 26 100.0 35 .......................... CCGTAGACAGTGGCGCTATGACGTATGAAGAGGGC 94519 26 100.0 35 .......................... CCGACAAACATTAGCTGAGGGAGCGTTATATAGCT 94580 26 100.0 35 .......................... CCGTGTCATTAGTACTATAGCCTAAATCTCGCATT 94641 26 100.0 35 .......................... CCATAATTGTTCAAATAAATGTTTAAAACTATCAC 94702 26 100.0 35 .......................... CCGGCAAAAAAAATAATGACAGGTTGGGTAATTCC 94763 26 100.0 36 .......................... CCGAGGTGATTAAAATGGAAAAAGAATTAGACACAT 94825 26 100.0 35 .......................... CCGCGTTACTCTGACTATCACCGATAATAGCGCGG 94886 26 100.0 35 .......................... CCGATTAATTATGTCAGAGAAATTAAAAATAATGC 94947 26 100.0 35 .......................... CCGCTAAAAGAAAAAAATACAACTTGGAGTGATAT 95008 26 100.0 35 .......................... CCGACGGTTTTTTAGGTTCAGGAGGCGGTTCGGGA 95069 26 100.0 35 .......................... CCGATTGCTCGCGCAAGGATTTAAGCTGATTCATC 95130 26 76.9 0 A..AA........T.....A...T.. | ========== ====== ====== ====== ========================== ==================================== ================== 12 26 98.1 35 GTGTTCCCTGTATACACAGGGATAAA # Left flank : AGAGGCTAAAGAGAAGCTTGAAACATGTTCCCTGTACACACAGGGATAAACCGATAGAGTCGAAACGTCAATTTTTTCACCCTCTGTGTTCCCTGTACACACAGGGATAAACCGAAAATTCTAGTAATAAAAAAGTTAATATTATTGTGTTCCCTGTACACACAGGGATAAACCGATAAATTCTAGAATCAATATTAATGTTTTGCTGTGTTCCCTGTACACACAGGGATAAATCGGCGATGCGTCAATATTACATAGCATTTTTTACTATTCAAATAATCGCAATTCTATATTTCATTGTTTACCATTTATTTAATTGCATGAAAAATATGAATTTATTGGTATAATTCCGTAGAATCGAATTTTAATTTCCATCAATTTTAATTAATTAAATAAAAACATAGTGTTATAAATATAGATTTTGGTAAAAAATAGCCTAAAAAATCGGTAGAAATTTGGTTACCAATATTTTAATTATAAAACAGTATGTTATAATTGGG # Right flank : ATCAATTGTAGACATGAACTTTAACCTTACTGAGTTACAGTTGTTTCGTATTTGTAAACAAACATTAGCCATTGCCATAGACCCGTTTAATGATTTGCGAGAAAAAACAGAATCGCCAGTATTAAAACGGTTATGCTTTATCACCATTAAAGAATTACAGGCGCACAAATGTGATTCGTCAAAACTCTTACTTTCTCAGATATCCGTTCATAACCAAATATCTATTTACATTCATTAATATAAAAAATAGGATTTATATAGTTATATTGTATAAAATATTTCCATATTAAAAATGAATATAAAGCACTTGAGAATATAGCATGATTCAACAAATAGCTGTTTTGGGTGATGTAACCAATTATGACGGAAGGATTATTACAGCCTCAGGGAACGGTTATTGTGGTATTGATGGTATCGCCTTATTGGGTGATTTAGCATCTTGCCCTAAATGTAGAAGTACAGGCAGAATCATAGAGGGAGCAAACGATTTTGTTATCGAC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTGTTCCCCGTATACACGGGGATAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 97788-98122 **** Predicted by CRISPRDetect 2.4 *** >NZ_VMHM01000001.1 Gilliamella apicola strain W8127 NODE_1_length_340859_cov_204.355367, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 97788 29 100.0 32 ............................. TTGTCTGCTCCCTCTATAATTCTGCCTGTGCT 97849 29 100.0 32 ............................. CGTATGAATAGATTTACAAATGTTTGCAATTA 97910 29 100.0 32 ............................. CTGTTAATGGTGGCCCCTACTGGACTTGAACC 97971 29 100.0 32 ............................. AAATTAAAATATATTTTTAATCCGCATATTGC 98032 29 100.0 33 ............................. CTAGTAACTGAATCATCTGAAGCTGAAAAAATC 98094 29 82.8 0 G...........CA............T.A | ========== ====== ====== ====== ============================= ================================= ================== 6 29 97.1 32 ATGTTCCCTGTATGCACAGGGATAAACCG # Left flank : TTAGTATAAAAAATCAATAAACAATTTATTTTAAATTCATGTTTATAAACAAAATACCATGTTGAGCTAACATAAATGTTTACTTTTCATATTGAGTAATAGATCATAAATAACAGCGCTTATAAAATTATTTCAATTCAAAAAAAAATATTCGATTACTCCAAATTACAGAAATGCACTTACAAAAAACGAGTACTTGAGATTAATTTGTGAAAATTTTATAACCAAGCTAAATCAGCAAACAACTTAAAAAGTAGAGTTATTTTGATAACAGTAAAGTATTAAAAACATCTCAATAAAAATTACTGTTTTTTAACTACATGAAAAATATAAATTTATCGGTAGAATTCCGTAGAATCTAATTTCAATTTCCATCAATTTTAATTAATTAAATAAAAACATAGTGTTATAAATATAGATTTTGGTAAAAAATAGCCTAAAAAATCGGTAGAAATTTGGTGACCAATATTTTAATTATAAAACAGTATGTTATAATTGGT # Right flank : ATATTAGATTAGAAGTTGTTAATTTTCTAAGAATAGGATGGATTTTAAGTATTATTTATACGACACAGATTTGACTGATTAATGAGTTTTTTAAGGATTGCATGGTAAAAGTATAAAGTAAATGAATTTTCACTTATTAATATGAAGAAGCAATTAACCTCATAAATACCTAGTTATTTCACTGATAATGCTAAATAACGATTACAGAGTTTGTTTTTGTTTATAACTGAATATTACGATCTCTTTCCATAAAATAGTTTATGAAAAGTCTTCTTTTCAAAAGGAATTAATAATTTATTCACTTAACTGCTTTGGTGGTTTTTTATTGCCCAAATTATCTAAATAAAATACTATTACCCAAAATAAAATTTAAAGTATGAAAAAAATTTAATTATTTTATCATCTGTTATTATTTAAAAATCAATGGAAGTAAGGAATGAAAAATTTAATTGCTATTTCAATATTAACTTTGATCGGTTTCAACGCATTTGCTAATGATA # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCTGTATGCACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTGTTCCCCGTATGCACGGGGATAAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 100271-100788 **** Predicted by CRISPRDetect 2.4 *** >NZ_VMHM01000001.1 Gilliamella apicola strain W8127 NODE_1_length_340859_cov_204.355367, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 100271 29 100.0 32 ............................. GGCAGGATGACGGGACATGGTTTTAGGTCATT 100332 29 100.0 32 ............................. TTCACTGCTTAAGTTGGGTTGCAATAGAATGC 100393 29 100.0 32 ............................. AGAATGGATAATAAGAGGATTGTCCATTTTTG 100454 29 100.0 32 ............................. TAACATTATAACTTATGTTTGGCATTTCTTTA 100515 29 100.0 32 ............................. TACGCGGCCGAAAATGCATAAAAATTTACAAT 100576 29 100.0 32 ............................. AGATATGACAGATAAAACAGAAAAAGACATTA 100637 29 100.0 33 ............................. CGGAATATTCTCCTTTTTTATTTTTATCTAATT 100699 29 100.0 32 ............................. CAATAACTAATTTATCTTTTATTGTTGGATAG 100760 29 96.6 0 ..........................T.. | ========== ====== ====== ====== ============================= ================================= ================== 9 29 99.6 32 GTGTTCCCTGTATGCACAGGGATAAACCG # Left flank : TTATAAAACAGTATGTTATAATTGGTGTTCCCTGTATGCACAGGGATAAACCGGCGATTCAATTAATACCCGTTGGCGATCTAAACGTGTTCCCTGTATGCACAGGGATAAACCGGCATCAATACAAATACATCACCAGATGTTTGTGTGTTCCCTGTATTCACAGGGATAAACCGCGCCATGTTATTCCCCCATCGTCACATGTCTGATGTTCCCTACACACAGGGATAAATCGGGGGATGCGTCAATATTACATAGCATTTTTTACTATACAAATAATCGCAATTCTATATTTCATTGTTTACCATTTATTTAATTACATGAAAAATATAAATCTATTGGTAGAATTCCGTAGAATCGAATTTTAATTCCCATCAATTTTAATTAATTAAATAAAAACATAGTGTTATAAATACAGATTTTGGTAAAAAATAGCCTAAAAAATCGGTAAAAATTTGGTGGTCAATATTTTAATTATAAAACAGTATGTTATAATTGGG # Right flank : GGGGATGCGTCAATATTACATAGAATTTTTTGCTATTCAAATAATTGCAATTCTATATTTCATTGTTTACCATTTATTTAATTTAATGAAAAATATAAATTTATCGGTAGAATTCCGTAGAATCAAATTTTAATTTCCATCAATTTTAATTAATTAAATAAAAACATAGTGTTATAAATTCTAATTTTGATAAAAAATAGCCTAAAAAATTGGTAGAAATTTGGTGGTTAATATTTTAATTATAAAACAGTATGTTATAATTGGGGTGTTCCCTGTATGCACAGGGATAAACCGAGCGTCTAAAACGCGAGAAATTCGAATTAACCGTGTTCCCTGTATGCACAGGGATAAACCGGAAAAACGTTACGATGTATTTATATCTGACGGGTGTTCCCTGTATGCACAGGGATAAACCGCTTAGATGTTTCCATATGCTCAATGATCACACCGTGTTCCCTGTATGCACAGGGATAAACCGAATAGTTAATTCGTGGTTTTTA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATGCACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTATGCACGGGGATAAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 101053-101692 **** Predicted by CRISPRDetect 2.4 *** >NZ_VMHM01000001.1 Gilliamella apicola strain W8127 NODE_1_length_340859_cov_204.355367, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 101053 29 100.0 32 ............................. AGCGTCTAAAACGCGAGAAATTCGAATTAACC 101114 29 100.0 32 ............................. GAAAAACGTTACGATGTATTTATATCTGACGG 101175 29 100.0 33 ............................. CTTAGATGTTTCCATATGCTCAATGATCACACC 101237 29 100.0 32 ............................. AATAGTTAATTCGTGGTTTTTAACGTCAGCTA 101298 29 100.0 32 ............................. ATTTCATTAATGAAATGAGCGCAACTAATGCT 101359 29 100.0 32 ............................. TAATTACCAGTATTCATTATTTGAATCATTGT 101420 29 100.0 32 ............................. AGAAATCAGTAATTGATGACATGCCTCAAAAT 101481 29 100.0 32 ............................. TCAGGAAACAAGGTTTAAGACAAACTGTTATA 101542 29 100.0 32 ............................. GCAAGATTTAACTGATAACACTGCAATTACTG 101603 29 100.0 32 ............................. TTCCAGTTTATCTAAATGAATCTGTGGAATAT 101664 29 79.3 0 .......................TCTTTA | ========== ====== ====== ====== ============================= ================================= ================== 11 29 98.1 32 GTGTTCCCTGTATGCACAGGGATAAACCG # Left flank : GAAAATGCATAAAAATTTACAATGTGTTCCCTGTATGCACAGGGATAAACCGAGATATGACAGATAAAACAGAAAAAGACATTAGTGTTCCCTGTATGCACAGGGATAAACCGCGGAATATTCTCCTTTTTTATTTTTATCTAATTGTGTTCCCTGTATGCACAGGGATAAACCGCAATAACTAATTTATCTTTTATTGTTGGATAGGTGTTCCCTGTATGCACAGGGATAAATCGGGGATGCGTCAATATTACATAGAATTTTTTGCTATTCAAATAATTGCAATTCTATATTTCATTGTTTACCATTTATTTAATTTAATGAAAAATATAAATTTATCGGTAGAATTCCGTAGAATCAAATTTTAATTTCCATCAATTTTAATTAATTAAATAAAAACATAGTGTTATAAATTCTAATTTTGATAAAAAATAGCCTAAAAAATTGGTAGAAATTTGGTGGTTAATATTTTAATTATAAAACAGTATGTTATAATTGGG # Right flank : ATTAAGAAAGTTCTGGCCAGTCAATCTTCATATCTCATGCCTACTCAGGGGGATTTTTTATTCTGCAAACTTATTTTTGTGATCATATCGATTATGGTGGATAGTATCACTTATTAAGTAGTTGTAAATTTCATCTACAATTTCTATCCCATTTTTTAAGTAATCCGCTTCACGTTTTTTGCCACGTTCACCAGAAAAAAAGACTTCACTATTTCCTTTGGCGGGTTTAACGTGTTTTAGTTGATCCAGCATGGCTGACATGTTCTTTTTGAACGTTTCAAGACCGATAAAATAATCGGGGTTGATAACAATATGCAAATGTCCAAGATCGCGTCCTTTGGACAAGTCGGCATACATGGATGAGACGTTTTTGCCAAATGGTACACCTAATAAAATGCCTGACAACACATCCACCATCATCATTAGCCCATAACCTTTGGCATCCGCTATTGGTAATAGAGCGTTGACTTTGTGTGGATCGGTTGTTGGTTCACCTTGTT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATGCACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTATGCACGGGGATAAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 230292-230745 **** Predicted by CRISPRDetect 2.4 *** >NZ_VMHM01000001.1 Gilliamella apicola strain W8127 NODE_1_length_340859_cov_204.355367, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ==================================== ================== 230292 26 100.0 36 .......................... CCGCAAAAAATGGATAATTCATTTGGTGGAAAAATT 230354 26 100.0 35 .......................... CCGTGCAGTCAGTTAATCCGCGAGTAAAATTTTTG 230415 26 100.0 35 .......................... CCGCACTACCTACAAATTTTGATACCAATGATAAA 230476 26 100.0 35 .......................... CCGGTTCAGATTTGAGCGGTGCACTCTTGGTATTT 230537 26 100.0 35 .......................... CCGGAGATCGCCAACATGAAAATCGCGATCGTTAA 230598 26 100.0 35 .......................... CCGGGCTATTTATCAACTGGCGCAATATTGTGATC 230659 26 100.0 35 .......................... CCGGTCCGATTCATACGCGAATCGTTAATAAATCT 230720 26 100.0 0 .......................... | ========== ====== ====== ====== ========================== ==================================== ================== 8 26 100.0 35 GTGTTCCCTGTATACACAGGGATAAA # Left flank : TGATTTTAATAAAAAATAACCTAAAAAATCGGTAGAAATTTGACGGTCAATATTTTAATTATAAAACAGTATGTTATAATTGGGGAGTTCCCTGTATGCACAGGGATAAACCGTTCCATTAGTACTCTAGCACCCCTCTAATTGAGAGTTCCCTGTATGCACAGGGATAAACCGGACTGTGATTTCGTGGTGTTTTACGTCATCTAGTGTTCCCTGTACACACAGGGATAAATCGGCGGAGCGTCAATATTACATAGCATTTTTTGCTATTCAAAAAAATCACAATTCTACATTTTATTGTTTTCTATTTTTTTAATTGTATGAAAAATATAAACTTATCGGTAGAATCCCGTAGAATCTAATTTTAACTTACATTAATTTTAATTAATCAAATAAAAACATAGTGTTATAGATTGTGATTTTAATGAAAAATAACCTAAAAAATCGGTAGAAATTTAACAGTCAATATTTTAATTATAAAACAGTATGTTATAATTAGA # Right flank : AATATAAAACTACTACAAACCGCTTCCAACTTTATGGGGTCACTTCATTCTGGCGGATTTTTAAAAAATCAAGTTTTCAAGCTTAAACAAATTCAATTAATAGTAAAAAACAATTATCAAAATTTGTAAAAAAGATGCACTGTATAAAAATACACTGTTTGTATAAACATAAAGAAAATGCATTCTTATTTATATATAATCACGATTATTGATTATATATTGTGTGTTATTTATGGCTATGGATAGTGGTGGTGCTTATAGTATAAGAGGTTTTAATTACCAGAAAGCAGTAATTGCTCAAATTGCTATTAATAATTTTAACGTGGATAATTTTTATATCATTGTTGAAAATCAAGAGGACATTGTAGTTTTTTTCTCAGAAAAAATTTTTCACCTGCAAGTAAAAGGGCAAACATTAAGTATTAAAAGTTTAGTTAAAGTTCCAAAGAATAAACATTCGATTTTATATAAACTTTTAAATAAGGAAGAAAAAGTAGATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTGTTCCCCGTATACACGGGGATAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 7 234044-234435 **** Predicted by CRISPRDetect 2.4 *** >NZ_VMHM01000001.1 Gilliamella apicola strain W8127 NODE_1_length_340859_cov_204.355367, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =================================== ================== 234044 26 100.0 35 .......................... CCGCATTGTCAATTTCTAACCAGATTGATTCAGTG 234105 26 100.0 35 .......................... CCGGCGGTAGGATTATCACGGCGTCGGGTCAGGGG 234166 26 100.0 35 .......................... CCGAGAAGCATAAGGGGAGAAAGATGAGCGATTTA 234227 26 88.5 35 A.....T.....C............. CCGATTTGTATGCACAGATACCAACCAATAATAAC 234288 26 92.3 35 A...........A............. CCGCCCAAACGGTTTGGGAAAATTTTCCAAAAGCA 234349 26 88.5 35 .A...........G.......G.... CCGTGTCATAAAACTGGACTTCTGACTTGTATTTG 234410 26 92.3 0 .A...........T............ | ========== ====== ====== ====== ========================== =================================== ================== 7 26 94.5 35 GTGTTCCCTGTATACACAGGGATAAA # Left flank : TGTAACAAAATTGAGATTAAAAGTGATCAGAAACTTTTAAATAAAAAAAGTTTTGATAGATTAAAAAAAGAAATTGGTTTGCTTAATGTTTAATCACTATATCTATTTCATTAAGCTATCTAAATTAACTTTAGAGCTCTTAGCTGAGAGTTCCCTGTATGCACAGGGATAAACCGGGCAGGTTCGCATGCGAACTATATTCGAACAGGCGTTCCCTGTACACACAGGGATAAATTGGCGGGGCGTCAATATTACATAGCATTTTTTGCTATTCAAAAAATCACAATTCTACATTTTATTGTTTTCTATTTTTTAATTGTATGAAAAATATAAATTTATCGGTAGAATCCCGTAGAATCTAATTTTAACTTACATTAATTTTAATTAATCAAATAAAAACATAGTGTTATAGATTGTGATTTTAATGAAAAATAACCTAAAAAATCGGTAGAAATTTAACAGTCAATATTTTAATTATAAAACAGTATGTTATAATTAGA # Right flank : ATCGGCGGGGCGTCTATATTACATAGCATTTTTTGCTATTCAAAAAAATCACAATTCTACATTTTATTGTTTTCTATTTTTTTAATTGTATGAAAAATATAAATTTATCGGTAGAATCCCGTAGAATCTAATTTTAACTTACATTAATTTTAATTAATCAAATAAAAACATAGTGTTATAGAATGTGATTTTAATGAAAAATATCCAAAAAAATCGGTAGAAATTTGCCAGTCAATATTTTAATTATAAAACAGTATGTTATAATTGGGGTGTTCCCTGTACACACAGGGATAAACCGGCTTGAAACATTTTTTAGGTTACCTAATAATTGTGTTCCCTGTACACACAGGGATAAACCGAGTTACCTCATCGTTATCACACTCAGACCATTGTGTTCCCTGTACACACAGGGATAAACCGCATCGATGCTTAATCCTCGTGATTTAAACAATCATGTTCCCTGTACACACAGGGATAAACCGGGGATACCAACAGGACTG # Questionable array : NO Score: 5.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTGTTCCCCGTATACACGGGGATAAA with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.80,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 8 234704-235038 **** Predicted by CRISPRDetect 2.4 *** >NZ_VMHM01000001.1 Gilliamella apicola strain W8127 NODE_1_length_340859_cov_204.355367, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 234704 29 100.0 32 ............................. GCTTGAAACATTTTTTAGGTTACCTAATAATT 234765 29 100.0 32 ............................. AGTTACCTCATCGTTATCACACTCAGACCATT 234826 29 100.0 33 ............................. CATCGATGCTTAATCCTCGTGATTTAAACAATC 234888 29 96.6 32 A............................ GGGATACCAACAGGACTGACGTGTCAATGTCC 234949 29 93.1 32 .C..........T................ TGACGCGAACAATTCAACTATCAAAATTACCG 235010 29 79.3 0 .C..........TG............ATA | ========== ====== ====== ====== ============================= ================================= ================== 6 29 94.8 32 GTGTTCCCTGTACACACAGGGATAAACCG # Left flank : AGGGGAGAAAGATGAGCGATTTAATGTTCTCTGTACACACAGGGATAAACCGATTTGTATGCACAGATACCAACCAATAATAACATGTTCCCTGTAAACACAGGGATAAACCGCCCAAACGGTTTGGGAAAATTTTCCAAAAGCAGAGTTCCCTGTATGCACAGGGGTAAACCGTGTCATAAAACTGGACTTCTGACTTGTATTTGGAGTTCCCTGTATTCACAGGGATAAATCGGCGGGGCGTCTATATTACATAGCATTTTTTGCTATTCAAAAAAATCACAATTCTACATTTTATTGTTTTCTATTTTTTTAATTGTATGAAAAATATAAATTTATCGGTAGAATCCCGTAGAATCTAATTTTAACTTACATTAATTTTAATTAATCAAATAAAAACATAGTGTTATAGAATGTGATTTTAATGAAAAATATCCAAAAAAATCGGTAGAAATTTGCCAGTCAATATTTTAATTATAAAACAGTATGTTATAATTGGG # Right flank : ACAAAACTACTACAAACCGCTCGCGTGGCGGTTTTTCATTGCCAAACTTTATCAAATAACATACCATTGCAAAAAAACATAAAGAATAAGGAAATGGTATGGAAAAGATTATTTATTGTTTGTTGTTATTCCCATTTTTTGTATTTGCTGATGATTTCTATAATTGTAAATATGCAATGGGTATTGAAACAGAAGAAAATCTAAACTATTTGGCGAATGGAACTGTTCGGGTAACCAATGATAGATTTGTTGCTCAAGATTTAACACACAAGGAGCATAAATCGCCTAAATTTACAGAGTTTACAGAATTTGCAGATAATTTATCTATTGCAGAGGACTCAGAGAAAGTATATGTTCTTGCAAATGATAGAACAAAGTATGTGATTACGACTAAAATAAGTAATCTTGTTTTTAAATGGGGTAATTGTACTCTTGATTTATCTATTGACTTCGAGAATGAAAAATTTGGTAACAAACCAGTAAATTTTTTTCCTAAGATA # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTACACACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCTATACACATAGGGATAAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 9 236820-237154 **** Predicted by CRISPRDetect 2.4 *** >NZ_VMHM01000001.1 Gilliamella apicola strain W8127 NODE_1_length_340859_cov_204.355367, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 236820 29 100.0 33 ............................. TGTGTAGGAAAATCATTTTTAAAGTGGGTCGGC 236882 29 100.0 32 ............................. GTTAGGCTCGCCCTGCGTTCGACTATGCGCAA 236943 29 100.0 32 ............................. CTTTTTCTGAAATTGGCGCGTATCTGCGGGGG 237004 29 96.6 32 ............T................ ACAGCGCAGGAATAACACGCGGTCTAGCAAGC 237065 29 93.1 32 ............T...............T GATAACGGATTGACAATTTCGGCTGGGTGGGT 237126 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================= ================== 6 29 97.7 32 GTGTTCCCTGTACACACAGGGATAAACCG # Left flank : TTCAAAAACTAAAGATTTTGAGTTCTCTCTAGCTGGCTTTGCAAAAGCCTTTAAAAAATTGCAAAAAAATTGTTCTACTAACTAATCAATGTTCCCTGTTCGCGCAGGGATAAACTGAATTTGACGTAATACGTAGTGGTTTATCTCCTATGTTTCCTATACACAGGGATAAACCGCGCAAGTTTCAATGGGCATTCCGCCCACTACGATGTTCCCTGTGCACACAGGGATAAATCAGCGGGGGCGTCAATATTACATAGCATTTTTTACTATTCAAAAATCGCAATTCTATATTTCATTGTCTACCATTTTTTAATTATATGAAAAATATTAACTTATCGGTAGAATCCCGTAGAATCTAATTTTAATTTTCATCAATTTTAATTAATCAAATAAAAACATAGTGTTATAGAATGTGATTTTAATGAAAAATAACCTAAAAAATCGGTAGAAATTTGACGGTCAATATTTTAATTATAAAACAGTATGTTATAATTGGA # Right flank : GTAATGAAAATTTAACGACATTCAAATAATGGAAAATGAAGCGTTAAGAATTAGGCATAAATCAAAGTGATCAATTAATTATATTGTGTATAATTTAATTACTTTATTTATTTCAGTTGTAACTATTTGGAACTTCAGTGTTAAAAGATGAAAAGAGATTGGGAATTAATTAGAAAAATAATGCTAGCTATAGAAGACTCTCCATGTGATATGAAAATATCGTCATTTTCGATTAAAGGCTATGATCCTGAGATTGTTGGTTATCATATAAAACTACTTAATGATGCACGTTTAGTTGAAGCCATTAATTCAAGTAGTGATCGAATGATGTATGAATATTATACTCAAGACTTAACGTTAGCAGGACATGAATTTTTAGATAATATTAGAAGTGATACAAATTGGAACAAAATAAAGAATCTTATTAAAGGTAAAGGTGGTGAGTTAACCTTTGAAACCATAAAAGCGGCAGCTTCTTATATGATTGTAAATTTGTTTTC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTACACACAGGGATAAACCG # Alternate repeat : GTGTTCCCTGTATACACAGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCTATACACATAGGGATAAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 10 244741-245196 **** Predicted by CRISPRDetect 2.4 *** >NZ_VMHM01000001.1 Gilliamella apicola strain W8127 NODE_1_length_340859_cov_204.355367, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 244741 29 100.0 32 ............................. GTAACTTTTCATTAAAAGAACGCGAAGAATTG 244802 29 100.0 32 ............................. TCGACAGTTGTTTTTAATTTTGAATTTTTCCC 244863 29 100.0 32 ............................. TCCTAAAATTGTATTGGTAAACACTTTTATCA 244924 29 100.0 32 ............................. GCGTTAACCACATCGCCAGCATCCAGACCCAA 244985 29 100.0 32 ............................. GCTGCATATTGTGATTTAGGCTGTATTGATTT 245046 29 100.0 32 ............................. AATTGTGAAATCACACCGATTCAAAAGGCTAT 245107 29 100.0 32 ............................. GTCGATGGATTTAGAGAGCGTCAAGTTGACAT 245168 29 93.1 0 .T..........................A | ========== ====== ====== ====== ============================= ================================ ================== 8 29 99.1 32 GCGTTCCCTGTATACACAGGGATAAACCG # Left flank : ACATTTAAATTAAACTTAAGGTGAAGTTAATTTCACCATAAGAGTAAATTATGATAACCATGGCGATACAATTACCAAAAAAGTAGATATTTGTATTGGTTACCGAGAAAGTCAGGCATTTCCTCTATATAGGGGTAAAATATGTCAAAAAGTTTCAGGTTAACCATACGTTTCAGTATAAATATCAATAAACAATTTAGCTTAACTTTATGTTCCCTGTACACACAAGGATAAATCGGCGGGCATCAATATTACATAGCATTTTTTGCTATTCAAAAATCGCAATTATATATTTCATTGTTTACCATTTTTTTAATTATATGAAAAATATAAATTTATCGGTAGAATCCCGTAGAATGTAATTTTAATTTCTATTAATTTTAATTAATTAAATAAAAACATAGTGTTATAAAATGTGATTTTAATGAAAAATATCCCAAAAAATCGGTAGAAATTTGACAGTCAATATTTTAATTATAAAACAGTATGTTATAATTAGA # Right flank : AATATATTCTATAGATAAAACTCGTTATTATTAATAAGAACAATATTGTTAATTTAGGGATAATTTTTCAGGTAAGCGTTTGAGAATGATAACTTAAAAAAATTATAAAAAATCTTCTAAAAAAGGGATTTAATTATCATAAACCAAATGATATGGTTGATTTCTTGAAATTTCGGACTTTTCCCAAATCTTATTGGTCTCACGATAATTTTTTGTGTATCAAACAATTTATTTTGTTAGAAATGGTACTCAAATATGATTTATTGCCAATTTCGAAATTAACCAAGAAAAAAATTATAATGATAAAACATTTAGAAGTTACATCAAACTATTTGCTAAATCTAAAACGTCGAAATTGAGATAATGATTTTTAGTTGAATTAGTTAATGAAGTAAACAATTTAATTAGTTCTGTTAACCAAATAATTACTGCAATAATAATTCATGATGATAATAAATTACTTTTAGCAGAGAAAATAAGAGATTTGCTTAATAAAATTA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGTTCCCTGTATACACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCTATACACATAGGGATAAACCG with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //