Array 1 36438-37265 **** Predicted by CRISPRDetect 2.4 *** >NZ_VWXY01000044.1 Thermoanaerobacterium thermosaccharolyticum strain B2 Contig_44_1384.65, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 36438 30 93.3 36 ........A....................C AAAGGAGATTTATCGCAAAAAGATTTTTCAATAAAA 36504 30 100.0 38 .............................. AAGGCACATATAACATCATTCTCAAAATCGTCTGTTAC 36572 30 100.0 36 .............................. TGGAATGGGCATTTAACAAGCATCTTATTGTGTCCT 36638 30 100.0 36 .............................. GGACTGAATGTGCTGGCACCTGGAACACCGAGAGCT 36704 30 100.0 36 .............................. CATACAGTGTCACTCACGTTTGTAAAAAGTTCTATA 36770 30 100.0 37 .............................. TAAACTTGTAAACATAACATATTTACAATATCTTTAT 36837 30 100.0 35 .............................. TGTTCTTCCCATACGCCTTCTTGAACATCTACCAC 36902 30 100.0 38 .............................. CGCTAATCAGGCGGTTAAAATTTTAAGATAGGAGGAAT 36970 30 100.0 36 .............................. TACGATCCGCCTTCTTTGCCGAATATCCACTTTGAT 37036 30 100.0 36 .............................. TTTTCTTTTTAAACCTTTTTAAATCCTCTATGAATT 37102 30 100.0 37 .............................. TTGCCAACGATCTATGATATCCGTCGAGGATATCAAG 37169 30 100.0 37 .............................. TCTTCTTTAGGAGGTTCAAGTTTGTAGCTTTTAGTTA 37236 30 96.7 0 .........................A.... | ========== ====== ====== ====== ============================== ====================================== ================== 13 30 99.2 37 GTATAACCGAAACATATGATGTATTGAAAT # Left flank : TATAGATATAATGACAAAATTTCAAGATAAAAATTTTGAAAGTATTTATGAATTAATATTTAAGGTTTTGAAAGTCAAAAGTGATAGATTAAATAGAGATAACATAAAATATTTATTTGAAGATTGTATGTTAATGAATTATAGAAAAATATCAAAAATTATGACTTTGATTGAAGGAAATGTTCAAGTATTTTTAGCACATAGAATTAAAACGGAAAATGGCATAATTGATGGTAAGGATGTATGGAACGAATACAAGCAATTGTTAAAAAATAGTGATATGCATTATGCTGAAAAAGCTGTAAATATATCACGATTAAAAGAAAAAATGTCATATTTTACGTATAATGTTTGTGGAAATATTGAAATAAAGTGCGATGAAGAGTTTGGAGGTTATTACTATATAAATGATGGTGATAGATTTATTGATGATGGAAAATTTGACAGAAAGAAATTTTCGAGTACTATGGGAGGTATGTTTTTATAATGATAACTGGAAC # Right flank : TAAATAATTTTTTAAAACAGGCTTAATGCCTGTTTTTTTTATGCCTGAAAAATTTTAAGAAAGGAGTTTTTGATATGGAAAATGAACTTAATAGAATAACAGAAATGTTAGACGTTAATTTACTTAAACCACACCCGCTAAATAAAGTTTATTTCGACGACATAGAAGGACAGGCATGGTTAGACTTTCTAGAAAGCGTAGAAACAAGCGGAATAATAGAACCACTAATTGTAACTAAAAGCTACAATAAAGAAGATGACACAGACAAAAACATAGAAATTACAGAAATGACTGAAGAAGAACTAAAAAACTGCTATATAGTTGTGGCAGGACACCAAAGGTTAAGAGCAGCGAAAGAATTAGGCATTACTAAATTGCCATGCGAAGTACATGAGTACGTAGACAAAAACGGTATTACTGCAAATGATTGGATTTTAAAAGAACTTATTGAAACGAATTTAAGGCAGCGTGGCAAAGGCAATTTAAACGACATGAAATCT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATAACCGAAACATATGATGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : NA // Array 2 94738-96798 **** Predicted by CRISPRDetect 2.4 *** >NZ_VWXY01000044.1 Thermoanaerobacterium thermosaccharolyticum strain B2 Contig_44_1384.65, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 94738 29 100.0 36 ............................. TTGTATATTGCCCGTTTTGCCATGTATGAGTATCTG 94803 29 100.0 37 ............................. TCATAAGCAGTTATCTTCATTTCGCTACTTGAAATAG 94869 29 100.0 36 ............................. ATATCGACGTTTTTTAAACGCTTATGGTCTAGCATT 94934 29 100.0 36 ............................. TTTTTAGTAAGCACCGCAAGTGAAGCAAACAACTCT 94999 29 100.0 38 ............................. ATGAAAGACCAAGAAATCAAAGAAGCCAACACGGGCTC 95066 29 100.0 35 ............................. TACAACACCAATTATAAGAGCAAATATAGTTGCAA 95130 29 100.0 40 ............................. AATTTATAGTTGGGACTATGGAAGCGAATTTGAACAACTA 95199 29 100.0 37 ............................. GATGAATTTATATTATTTATGAATACAATTAGCACAA 95265 29 100.0 37 ............................. GTTTTAATAGTGCTCTCAACTAATTGCTCATCATTAA 95331 29 100.0 36 ............................. GACATAGCACCTGCTGATACAACAGCATTTGCCACA 95396 29 100.0 36 ............................. CTTAATGAATGGGTCAAGTGGAGAACAGGTGAAGTA 95461 29 100.0 36 ............................. CAAGCTTGCCAATATGGTACTGTATCAAAGTTTTTC 95526 29 100.0 36 ............................. AATAAAAAATTTTATAGTGTAAATTTTATAGTAGAA 95591 29 100.0 36 ............................. TTTTCTAATAAGTCAATGTCTTTTATATAATAATAT 95656 29 100.0 36 ............................. GTCTCATAACGAGGAAGATTTGTGTTTACAAGTGTA 95721 29 100.0 38 ............................. TGCTATCCAGTATCAGCGAACCTATTTGCGCATAGCTA 95788 29 100.0 36 ............................. TACCATTCTTAAAACTGTTATTTAAAAATTGTTCAG 95853 29 100.0 35 ............................. TTGCATTATAGCTTCAAATGTCTGTTCTTCAAACA 95917 29 100.0 37 ............................. TGTATTCTTAATTCAATACTTTCTGGTGTTGTTTCTG 95983 29 100.0 37 ............................. TTTATGACTTGTTCTGGTCTGTAACTATTCATCTAAA 96049 29 100.0 36 ............................. TTGTTAGTGGGTTGTGGATCATCATAATGGCTACAG 96114 29 100.0 37 ............................. TACCACTTTATGCGATTTTGGGTCATGGTGTGGGAAT 96180 29 100.0 37 ............................. ATGAATGGGGATTATGATGCGATTTCCGTAGGCGATT 96246 29 100.0 36 ............................. TAAAAAAAATAATAATAATTGCTTGACAAGTATATA 96311 29 100.0 36 ............................. TCTTGAAAAGCAACTAATGTACTAAATGCTATTACT 96376 29 100.0 37 ............................. AACATACAGTGTGTCATCTCTTTTTTCTCCGTCTGGC 96442 29 100.0 36 ............................. ATCATTGAGAGTATATTAGAATTATATCAGAAAAAA 96507 29 100.0 37 ............................. TGCAGTAGAAAAAGAATTTGTAAAGTATACAGGCGTA 96573 29 100.0 38 ............................. GATTTTTGCCCGCAATGTTTTTATAGCACAGATTCACC 96640 29 100.0 36 ............................. GTGAAGGACAAAAGACAAGCATGGAACGAATTGATG 96705 29 96.6 36 ................G............ TATTTTTTCTCTAAAAATTGCAGAAAGGCATATACA 96770 29 93.1 0 ................G...........A | ========== ====== ====== ====== ============================= ======================================== ================== 32 29 99.7 37 GTTGCATCTGAACTATATGGGATATAAAG # Left flank : ACAAACCTTTAAAGGCGTGGTGGTAATGGCTTATGTAATAGTTACATATGATGTATCTGAAAAGCGTGTAAATAAGGTCCGAAAAAAGCTAAAAGAATATCTTGCTTGGGTTCAAAATTCTGTCTTTGAGGGTGAAATATCTGATGGCAAGCTTGATAAATGTAAAAATGAGCTTTTAAAGATTATTAATAGAAATGAAGATTCTATTTATTTTTATGAAATTAGGTTTAAAGATAATTGTGGCAAAAACATATTGGGTATAGAAAAAGATTATGATTCGAACATATTATAATTGCAGCAAAGGTATTCTTAAAGAAATTAGGCTTAACTATGCATGAATAGTAAATATAATGCTATAATTATTATAGGTACTAAAAACCTATTGTATCCTTGCTGCAAAAAGTTACGATTTAAAGTAATAATAAAGCTAAATAAAAGTATTGCCTAAGCCAATAATATAGTACATTTGAGGCAATATATTTTATGTAAAAAAATCTGGG # Right flank : AACTGGTTAGTAGTTATACGAAAGGTTGATTTCGTATAATTATGTCGCTTACAAATTTATTTATCAATATTGTTAAAGATAACAGTAATTTATTAGAAGATAAATATATTAGAAAATGGTATCTATTGGCGAAAACTATGTATAAAGATTTTAAGACAAAGGAAAATAGTTTTCAGGAAAGAAAAATAAAAAATTATAAAATGTGTAATTTTTACAATAAAAATTTTAGCTGGAAATAATTTTGTGTTGAATTTTTATAAAGAAGGAATCTGCATGATTTTGTAGAATTAGAAAGTAAGGCAATTAAAATTTACAAAAATATATATGCTATAAAAAATTAAGGGACATGTGATGCCTTTTAAATTTGATAAAATATTTATATTAATGAATAAAAAGTATTATTCTCAAATAAATTATAGGAGGAATGATAAATGATGATAGGCGAAAACAGGGCATTAAAAGCTTATAATTTTTATAAAACGAATAAGCCTTGTATATTT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCATCTGAACTATATGGGATATAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 24267-23305 **** Predicted by CRISPRDetect 2.4 *** >NZ_VWXY01000054.1 Thermoanaerobacterium thermosaccharolyticum strain B2 Contig_54_1668.68, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 24266 30 93.3 37 .................G...G........ TTTTTCATCTGCTCATCTTGCTCTAATACAGCTACAA 24199 30 93.3 36 .................G...G........ AAAGTAAAGGGGAATAACAAATGATACAAGCATTGA 24133 30 93.3 37 .................G...G........ CATGATTTGGGATAGACGACAAAATAATAGTATGTGA 24066 30 93.3 39 .................G...G........ GGTTAATACTGGAACAGATACAGCTCCAACATGGACAAC 23997 30 93.3 37 .................G...G........ AATGCTTAACAGAAATAACCAAGGAGGCAGGATTCGA 23930 30 90.0 36 .................G..AG........ TATATTTATCCATGATCTTTTTGTCTATGTTGCTCG 23864 30 100.0 35 .............................. TTTTCTTTGTCCCACCATATCCAAGTAGGTTCCAA 23799 30 100.0 36 .............................. TAAACGGTCCACGTAACCCATTGGCAGGCTTGATAA 23733 30 100.0 37 .............................. CCTTTTAAGACATTTGCTTATGTTGAATATTGGATGA 23666 30 100.0 36 .............................. ACAATATACACAAACATAACATTATCAAAATCTTTT 23600 30 100.0 37 .............................. TTATAACGTCCTCTTGAGCTTTAAAAGGTTTTGTTTT 23533 30 100.0 37 .............................. AGACCAAACATATTTTTTATGTCGTCAGCAAGTGAAA 23466 30 100.0 36 .............................. TTCACAAATAAACTGTCAGTATCACAATAAAATACA 23400 30 96.7 36 .................G............ CTGTATCAGCATCTATAGGATTTTGCTCATTGCGGT 23334 30 76.7 0 .............A...G...G...T.TTT | ========== ====== ====== ====== ============================== ======================================= ================== 15 30 95.3 37 GTTTTTAGCCTACCTATCAGGAATTGAAAC # Left flank : ATAGATTTAAGTGAATATGAACTTTGGAATAACGGAAAGAGCATAAGTTTAACTTGATATGAATGCCAGATAAAAAGTTCTATACGAGGAGGGGTATATATGCCACTACCGAAAGAAAATAAGAAATATACGTATGCTGATTATTTGACGTGGCCAGAAGGAGAAAGGTATGAGATAATTAATGAGGTACCATATATGCAAGCAGCACCGACATGGCAGCATCAAGCGGTATTATACAATGTAGGTATAAAAAGTTAAAATTTAGGGAGGAATTTGGAGAATTATGTAGAATATATATAAAGTTGTTGAATGGGGTAATAAATTGTCGTCTACCTTAGATAATGCAAAAAGTTCAGGACATCGACGACAATTTAGCGATTTACATTTTAAGTTTTTATCATGAGAGACGGGTATTATTTTCAGAATTATCAAGTATGATGGCTTGACATTGACCTGATTTTCTACAAAAATAAAATTGTCTTTATAAAAGAATGTGAACG # Right flank : GCATATAGTGAGGTGAGAAGAAAAATGAGTGAAATTATTTATTATGGTGCGTATGGGTCAAATTTGCTAAGAGAAAGATTTCTTATATACATAAAAGGTGGAGAATATAGAGGCAAAGAATATAGTGGATGCAGAGATAAAACAGAACCAATAGACATGGGCTGGATATATGTTCCTTACAGGCTTTATTTTGCAAGATGTTCTCCACGATGGGAAAATAAAGGTGTAGCTTTCTTATTTGACGAGAAAGAAGAAAATCCCGAGTACTATTCAGTCATTAGACTGTGGAAGATAACAGAAGAGCAGTTTTATGAAATCCAAAGACAAGAAGGCGGTTGGTATAACCTTATTTTAGAACTTGTTGAAAAAGATGGAATTGAAATTAAAACGATAACTGGACGCTGGAGAGATAAAAAACAAGCTCCATCAGAAGAATATTTAGAAGTCATTAAGAAAGGATTAAAAGAAACGACCAATTGGGATGATGAAAGAATAGAGGC # Questionable array : NO Score: 8.78 # Score Detail : 1:0, 2:3, 3:3, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.76, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCCTACCTATCAGGAATTGAAAC # Alternate repeat : GTTTTTAGCCTACCTATGAGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.50,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 67845-59804 **** Predicted by CRISPRDetect 2.4 *** >NZ_VWXY01000032.1 Thermoanaerobacterium thermosaccharolyticum strain B2 Contig_32_3844.71, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================================================================================================================================================== ================== 67844 30 100.0 37 .............................. CTTCGTATTGGTTTGATAACTATATGGCAGATGACGA 67777 30 100.0 39 .............................. ACATATATATGCCCCCTTAAAAGGGAAAAGGGTGCAACC 67708 30 100.0 35 .............................. GCACATAAGTATTTGCAATTATATTTGAATGTCAA 67643 30 100.0 37 .............................. CATTTAGCGATTGGGATGTATTGGATACTATATAGGA 67576 30 100.0 37 .............................. AAGCAATACAAGTACATTATGGAAGGCTATACTGCAA 67509 30 100.0 36 .............................. AATCTATCCAATCACCAATATCATTGGCGAAGTACA 67443 30 100.0 35 .............................. CGGTAATACATGCTTAAAGCAATTTCCGAAGTCCG 67378 30 100.0 37 .............................. AGATAATTCTGCGCTTCTGTGTAGTCTGTTGCTTCTG 67311 30 100.0 38 .............................. ATTGTTATTTCAGTCGCAACAGGCTCAGTATCTCTTGT 67243 30 100.0 37 .............................. TGTATTCTTAAAGTATATTTGACGACACTTGAATTAT 67176 30 100.0 37 .............................. ATATTCTCAATGCGTTTGGTCTGACCACACCGCCACC 67109 30 100.0 39 .............................. ATTATAAGAGCAAATATAGTTGCAAATATTGGATATAAC 67040 30 100.0 38 .............................. TGAGAGAAGGCAAGGCGGCACTCGCTCCTGAAGAGCAG 66972 30 100.0 36 .............................. TATTCCTACCTGTTCTTTGTATGTCTCTGCCTGTGC 66906 30 100.0 37 .............................. GTGCTATAACAATATTTGAGCTGCGTTATTATGCTAT 66839 30 100.0 37 .............................. TTCAAATTCTTCAAAGTTACAGTTCAGGCATAGCCGA 66772 30 100.0 37 .............................. TAAATGGAACATGGGGTGAGATATGGGTTGATGGTAA 66705 30 100.0 37 .............................. GTGGAGAACAGGTGAAGTAAAAGTAATAGTTATGGAG 66638 30 100.0 37 .............................. TAGACAGTAGAGATGACAGTGGCAAAGAAATCATAAA 66571 30 100.0 39 .............................. TTTCTAAGTCCAATGAAACTGACTCCAATTAAACAACAG 66502 30 100.0 39 .............................. TTAGATACTTTAGCCATATAATATTTGTCGGGTTCCTTG 66433 30 100.0 38 .............................. TAATATGCACTGGCATTTTTATCACCACGTTCTTCTTC 66365 30 100.0 36 .............................. TGATTTAAAAAAATATGATTGTGAGTCGTATGAAAA 66299 30 100.0 36 .............................. TCATTAAAATCCGCAATGCTAAGACCATTCTTTCCA 66233 30 100.0 38 .............................. CTACATTTAAAGGTGAATCTTCTCTTGAATCTTCATAA 66165 30 100.0 37 .............................. TCATAGTTGGATATTATATCATCTTCTACAAGTATTA 66098 30 100.0 37 .............................. AAGCCATTTTGAATAGCAGTTGCATAAGCTTGATATC 66031 30 100.0 39 .............................. AATTGTCATTTAAGAATTGCTCTATTTCATCTTTTACCA 65962 30 100.0 38 .............................. GCTAAATTCAGCAGCGTATCTCTTTTGACTTCTATATA 65894 30 100.0 36 .............................. ACAATATCATATATAGATTCCTATGTTGCACCAATG 65828 30 100.0 37 .............................. CAGTACATTGTACGGAGTTTCATTACCTCCGTACCAG 65761 30 100.0 39 .............................. ATCTCACCAGCCTTGTAAGTATTATATATGTTTGTCTGT 65692 30 100.0 37 .............................. TGAACGACGGTGAAAAAGTAAAGATTGCCAGAGCGGT 65625 30 100.0 37 .............................. AATCTTCTATATTTCCCTTCATAATCCCAAACACCGC 65558 30 100.0 38 .............................. CGTTTTGCGTTTTATTATTACCCTGATTTATTATTTGC 65490 30 100.0 36 .............................. ATATTCACTGTTTTAACTTCTCTGGTATCATTTAAA 65424 30 100.0 35 .............................. TATTTAAGCCTTTAGAAATGGAGAATTTAATAAAT 65359 30 100.0 37 .............................. GTGGTATATATCCGCCGACTGATGTGATAGCTGAAGA 65292 30 100.0 37 .............................. GATTTAAAAATGGTAGGACAGCCTTCTATTATCGTAA 65225 30 100.0 39 .............................. CATTACCAATACTTGAGGCCATATCGCCAAAAGTTGTTT 65156 30 100.0 37 .............................. TCTTTTCTTCTGTCTGCAAATATTGTCTTAGTCTTTC 65089 30 100.0 36 .............................. AGTCCATTGCTCTTTTTGCACTGCTTTTGACTGCTC 65023 30 100.0 37 .............................. ACCATGTGGACGCCAGGCTGGAATCCATGCACTTTGC 64956 30 100.0 37 .............................. TCTCTAAATTGTTTTATAGCAGGACTTAGATTACTAT 64889 30 100.0 39 .............................. CGCTTGAATTAAAGGAATATCGGTTCTTGAATATTCAGC 64820 30 100.0 37 .............................. ATCCTCCATGAACTTCATTAAACCATTTTGCGAAATA 64753 30 100.0 35 .............................. TCCCATTCATGCCCTTCTTCTGCATAATACAGCAA 64688 30 100.0 37 .............................. GAAAACTGAACGTACGTGGTGGCGTATCGGTACCCAT 64621 30 100.0 38 .............................. GTTGGTGATGTAGCTATATTGATTTCTAACTTTCTAGC 64553 30 100.0 36 .............................. AATGAAAATGTGGTGATGAGTTCCAAAATTCAATAT 64487 30 100.0 36 .............................. AGCATATCCATTTAACAATTCAAAAACCACTGTGGC 64421 30 100.0 37 .............................. CACTCCAAGCCATAATAGCTAAAGGATATCTTCTGAC 64354 30 100.0 37 .............................. TCTGTATCAAAATTTACAATTCCTTCATGGTCCGCTG 64287 30 100.0 37 .............................. GATATACCGGACATGCTTAATGTGATTTTCTTTTCTT 64220 30 100.0 36 .............................. TGGCTTTGTGTTCTTCTTTCGTTAAATCCGTCCATT 64154 30 100.0 36 .............................. AAGGCAAAATATCATATTTGAATATTTGCAAACCAA 64088 30 100.0 37 .............................. TATAATAATATCTCTTTAATTCTTCAATATAGCAATA 64021 30 100.0 36 .............................. TATACAATATATTCCAATCACCTCCGCTAAAACCAA 63955 30 100.0 37 .............................. ATTCTCTCAAGGAACGTCTGCCCATTTCCTGTTGCAC 63888 30 100.0 36 .............................. CTTCTCCCCATGCTTCGGCAGGATCCAGCTGTTCTT 63822 30 100.0 36 .............................. CTATCGCCGATCAATTCCGGTGGCACTCCGAAAGCG 63756 30 100.0 37 .............................. AATCTGATGAAAGAAAGAGACGACAAGAAAAGATATT 63689 30 100.0 37 .............................. AAGGCGTAACCTGAACGTTAGATGCTCTCTGCAAATC 63622 30 100.0 36 .............................. CTTTTAGATATGATATTTTTGCTAAATCTTCGCTCT 63556 30 100.0 36 .............................. AAGAACTTCGCCAAGCAACAGGGCTTGAAGGCTTCC 63490 30 100.0 37 .............................. CCTATCTGCTGCAGCATGTTTACTTTTCTATTTATAC 63423 30 100.0 38 .............................. GACCCGTATAACGCGTTGCAGATGATGGAAAGCCTATC 63355 30 100.0 36 .............................. TACGCTAGTTGAGCAATATATAAGAGAAATTGAGAA 63289 30 100.0 36 .............................. TTTCCTCCCATTCAAACTGCCCGTATCCGCCATTTC 63223 30 100.0 37 .............................. ATAAGCCAGCCTTTCCCCTTAATCCTTCCACCTCTCT 63156 30 100.0 36 .............................. GAGGAAATAGAATTTGTTGATAAAAAATGGACAAAT 63090 30 100.0 33 .............................. CTGTAACATTTAAACTACCTCTCAATGTGTCTG 63027 30 100.0 38 .............................. GCATCTGTCGTTGTACCTAATGTTGCTATGGCTCCATC 62959 30 100.0 36 .............................. CATTTCTGTCGTATTCTTTTTCCTTGTGATCTGCCA 62893 30 100.0 37 .............................. AGCTCATGATAAAGAATTTCTTCCACATCTGTATCAA 62826 30 100.0 36 .............................. TTGAAGATAAGTCAAGAATACTGCATTCATAACTGA 62760 30 100.0 37 .............................. CAGCAAGCCTATAAAGTTCGTTCGTCTCATCTCTGAG 62693 30 100.0 36 .............................. CACAGACATGGGAGCTTGCGTTAGACTCGGCTAGCG 62627 30 100.0 37 .............................. CTAATAGCTGTTTTGAGATTTCCACTGGTACTTAAAG 62560 30 100.0 35 .............................. AGAGAATATGCAAATGGCTCACATGTAAATTGAAT 62495 30 100.0 37 .............................. CCGGGTCCCGTCAAGCAGGGGATTGCCGTCTTTGCAG 62428 30 100.0 36 .............................. ACAGTTTTGATGGCGATACAGGACGTTTCAACCTAC 62362 30 100.0 38 .............................. ACTGCAATGACATTGACAGAGAACTGGCAGAAATTGAC 62294 30 100.0 37 .............................. TTGCGATGCTAGGTCCCCTCTTTGCTGGACTAGCCGC 62227 30 100.0 36 .............................. AGACCATCGCTGCACTTGCTTGACCCACTATCATCA 62161 30 100.0 36 .............................. TCAGTCCAGCCTTCTTTTGACAAATCAACTACTATT 62095 30 100.0 36 .............................. AGTCTACATTCTGTTGCAAATATTTCTTTGACAAGC 62029 30 100.0 37 .............................. CAGGATAGCGATATTAGACGCAGGATTGGACTATCAA 61962 30 100.0 36 .............................. AATACAGCGTCTTTTATGACGATTCTTTCAGCACCC 61896 30 100.0 38 .............................. ATTTAGCTGAACATGCACTAATTGGCTGTGAAGGCTGT 61828 30 100.0 36 .............................. TAAGCGGTGATGGAAACAACAAACCTAAAGGCTTTA 61762 30 100.0 35 .............................. TTCGCCCAAAAAGAGCAGAGAAAATATTACGTCAA 61697 30 100.0 36 .............................. CTGTTTTCCTGCAATGCTGATGTCTTGGCACGGAAA 61631 30 100.0 36 .............................. TCGGATAACCCGCAAAATATCATGTTATTGCAATTC 61565 30 100.0 36 .............................. AATGTAATTCTATGCCTTAAATCACCTGGATTCATA 61499 30 100.0 36 .............................. GGTCTTTTGCATAGCTCGTATCTGTCGGTATAAACC 61433 30 100.0 37 .............................. CAAGCACAGTAGCAACAGCCTTAAGAGCTTTCGGAGA 61366 30 100.0 38 .............................. AGGATTGGTATGGGACGTGTACATGCAGATTACAAATG 61298 30 100.0 37 .............................. TATTTTAAGTGGATATAATTTAGAGAATACTGCTAAA 61231 30 100.0 35 .............................. ACAGATTTAGAAGCAAAAAAAGAACAGAAAGATAA 61166 30 100.0 35 .............................. CCTGTTGTTGGCGCTTCATTCGTTACGCTTATCAC 61101 30 100.0 37 .............................. GGCGTTATATTGGGAATATATCTTACAGTTATTTTGT 61034 30 100.0 37 .............................. TATTCTTGCGCTGGAAAAAAAGAGCTAATCGTAATTG 60967 30 100.0 35 .............................. TCTCTTCTTTACGTTCTATCAAATACATAATCATC 60902 30 100.0 37 .............................. TTGCATAACTTGCTTTTTGTTGCTCTTTTTGTAAATG 60835 30 100.0 38 .............................. GCAGCAGTAAAAGCGGCTAAAGGAGGTTTCACTGATAC 60767 30 100.0 38 .............................. CATGGAATAGCATCAAAACCGTAGCAACATCTATATGG 60699 30 100.0 36 .............................. TCTTCATTTTGGGATGCACTACTATCTTTTGTATAT 60633 30 100.0 35 .............................. AAGTTCTTAACACATCTAATTCAATATCAATATCC 60568 30 100.0 40 .............................. TTAGCAAACGAGAAAAAACAAGAGCAAGAACAAATTAGGC 60498 30 100.0 36 .............................. AGGTATAAAAGTATAAGCAAATAAAAAATAAATAAA 60432 30 100.0 35 .............................. CCCGAATGGGTAGTAGGGCTATTTTTTTGAAGGTG 60367 30 100.0 36 .............................. TTAACAAGGCTTTTATTCATAGGCCTGTGGACAATA 60301 30 100.0 37 .............................. AAAGATAGGGGGATATAAATGATTACACCAATGCAAT 60234 30 100.0 37 .............................. TTTATATCCTTTATTAAAACTTAGACCAAACCCGTAT 60167 30 100.0 37 .............................. AAGAAAGAAAAATTTATCTTATACGAAATGGCAAAGC 60100 30 100.0 37 .............................. AGGTATTCTTTTATGTCGTCGTATTCTTCTTGAGTAA 60033 30 73.3 170 A..A........T....A...T.C...G.T ATAAAATTTTGGAGGAGTAAAAATGATGCCTTTTATTCCGAAAGAACTTGCACCGTATTTAATTATTGTAGAAGATGGATATAAATTAAAAGAATGTGCACCTGATAATGTTAAAAAGATGTTCCTTGTGTGGGTTAAAGAAGTTAAAAAGCTTGAATCAGAACAAGTTA 59833 30 76.7 0 ......GT.....T...A.......C.C.T | ========== ====== ====== ====== ============================== ========================================================================================================================================================================== ================== 119 30 99.6 38 GTTTTTAGCCTACCTATCAGGAATTGAAAC # Left flank : ATAGTGATGATGGTACACCAAGCATAAGCAAATTTAAGCTTATAGATGACGGATATTATAAAGTTGATGCATATATAGAATATAATGATGAGGCAATTGAACTATGGCAAAGATATTTAGAACTTAAAAATGTAAAAAATCTTTTTAAAAGAAGAAACATATTTAATGAGTTTAAAGCTGATTTTTATAAATACGTAATTTCAATTCCAGAAAAAACTGAAAACATGCCGGCGGATGTAGAAGGTTTTAAATATGTAAACAGTGATTCAATAAATGAATATTATGATAAGGAGACGGGATTTATAACAAAAGGTGTTTTAAGCATCTGGTAATAAAATGTCGTCGATGTCCAATAGTGCAAAAAGTGCTGGAGATCGACGACATTTTTATTTTTTAGACACGTTGAATTATCTGTGTTTTATGATATAATAAGGTTGTAAACTTTACATAAATAGTATTTTATATTTTAAGACTTTGTTGGATTTTAGGCATTTTAACGA # Right flank : AAGAGTGGTGAGTTTTTATGTAAATAAATAAAAAATTAAACAATGATATTGTTGGGCTAAAAACGGTAGAGAGGGCACTATTCTGAAAATATATGACATCAAAAATTTATCAATAGGCTATTATGTAGAGTTATCCGAACATGATGGTGAAATAATTACAGTAACAGATGAACAAATAGATAAAATTATATGGGAGATGCCTCAAAGATTTTGATTTGTTATGTAATAAGTGAAAAACATTTTTATGATATAAAACATATATACAAGAAGGTGTTCTTATGTACGATGAAGTTACAGGCTCATTGATGCAAAGTTATAATATATGCAAAAGGCAGGTATGGCTCATGGCCCACCAGATAATTCCTGACCAAGAGCACCCATACATTGAGATGGGACGTTTGATCGATGACATATCTTATGACAGGGATAGAAAGAAGCTAAACTTTGAAAATGTTGTTATAGATCTTGTGAGAAATGACAATGGCAACCTGCTAGTAGGG # Questionable array : NO Score: 9.14 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCCTACCTATCAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.50,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //