Array 1 77069-77456 **** Predicted by CRISPRDetect 2.4 *** >NZ_CPXN01000018.1 Yersinia pseudotuberculosis strain IP33038, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 77069 28 100.0 32 ............................ AACAACGCGCGAAAGACAAGAAGGCGGCTCTT 77129 28 100.0 32 ............................ CTTCAAAGGACATACCAGACTTGTGGCAAGAT 77189 28 100.0 32 ............................ TATGACTTTTCATCGCAGCGATACACTCAGTT 77249 28 100.0 32 ............................ GATCTCGCCGTCCAATAGCTCGATAATTGAAC 77309 28 100.0 32 ............................ AACTTGAAACCTTCCCAGCAGTGACACTGGAT 77369 28 96.4 32 A........................... TTACACGCTGGACGGCCAGGGAGACGAGAGCT 77429 27 89.3 0 .....................CC.-... | T [77455] ========== ====== ====== ====== ============================ ================================ ================== 7 28 98.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GTTATAAGGCAAGCTCACGCTCATCATTAAGTTTATCAATCCGGCACAGTCTCTGTTGCCGGATTTTTTGTATTCAGAAAACCAGGCCAGAGCGTATTGTCGTGCGGCTACAATCTCAATCGTGATTAGGCTAGAAAAATGAATCGAGGTGATGAACTCCAGCAGGCAGACCCTCAACTCGTCGTGGGAAAATACCGGATAGCGGATAATGCCGCCCCTAATTCGCAATAAACGATACCGAGTAACCGTACCCATTAGCCATAGTATTACTTTTTTAGTTATTTAATTTGGCAGGCCAGAAACATGGGCCACGCCACCCCCCCTCCTCAGAAGAGTAATCATTAGGGTTACGTCCCCCCCGATTCTTGTGACCCTCTTTTTTTCACTATGACTAACGTATTGATTTTTATGCTACTCAGGTATTTCACTAAAAAAAGGGTTTTTACGCATTTTGCGCCATTGCTCATTGATAAACATCGGGTTATCCGTATTATCTTACT # Right flank : ATCTCAGCTCTCTGGCGGCGTTTTATCTGCAAATATTAACTCACTAATCCCTTGGCATATTCAAACAACGCTTTTAGCAGCGCAAGTTTCTCTTTATCGTCTTCATACTGGTTATAAAATTGTTCCAGTTGCAAAACATAATCTTGTACCCGCTCAGGGCTAAGCGCTTCACGGCGATGCTGTAACCAACGCTGTTGTTCACTGTTATTCAAGGTATTTGGGTAGTTACGGGCGCGGAAGCGGAATAGCAGGGCCTCCAACCGTGGGTCCTGAAATGTCAAATCCAGTGCTGGCAGATTTTGTGGCTCAGTTTGCTGGATAATCTTCATGGTGGCGCGGTCAGCATCACTGAAAAAGCCGTTATACAACTGTGTATCCACATCATCGGTAACCGCGAATGGCTCAGCTTGTGCAAACAGCGCGACCACTTTTTCACGCACCTGCGGGTTTTGCCGCAACAGTTGCAGATTTTGCAAACAACGCTGGCGATCAATCCCCAA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.60,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 14422-16251 **** Predicted by CRISPRDetect 2.4 *** >NZ_CPXN01000016.1 Yersinia pseudotuberculosis strain IP33038, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 14422 28 100.0 32 ............................ TACGCGTACGTATCACATCCGTGGATTAATGG 14482 28 100.0 33 ............................ CTAATCCAGCAAGCATAGAAAGGCTGATTGAAA 14543 28 100.0 32 ............................ GTGCTAGCTAATCACGCTAGTAGTGTGCAAGG 14603 28 100.0 32 ............................ AGACACAGGCGAAACTATATTCTATATGAACC 14663 28 100.0 32 ............................ TATATGAATCAGCTTATAAATATGGGTAACAG 14723 28 100.0 32 ............................ TTGCACCGTGTCAGCTTTTAACGCATATAATG 14783 28 100.0 33 ............................ AAAAATGCCTGTGAGTCTAAATTAATGCGTTTA 14844 28 100.0 32 ............................ AAATGGCCTGGCGGCTTTGGGGTCGTGGTCTT 14904 28 100.0 32 ............................ ATATTCATGACAAAACCGGCGTCATTAACTAA 14964 28 100.0 32 ............................ TTGCTAACATTCGCACCATTAGAACTTTTGTT 15024 28 100.0 32 ............................ TCCGGTCAACGCCACGGGTTGCTACATAATTA 15084 28 100.0 32 ............................ TAACAATTTTAGTAACGTCGAGGGGTTCCGAT 15144 28 100.0 32 ............................ TTGCACCGTTTCTAGATTTAATGCTTTTAATG 15204 28 100.0 32 ............................ ACGCTAATCTCTTGCATAGTATCACCGAAGGG 15264 28 100.0 32 ............................ AGCTTCTTCGTGACTCATCCCGCCGCCGACAT 15324 28 100.0 32 ............................ AGCCCGGACGCGATAGCGATCAATTCCAGCTC 15384 28 100.0 32 ............................ TCCTCGCGACAGCGAGGAGGAGGAGGGAGAGC 15444 28 100.0 32 ............................ TATGTCGGATAGTAACGTCGAGGGGTTCCGAT 15504 28 100.0 32 ............................ CGCGTCTTGCGCATTCAGCCCGATCCCTTTCA 15564 28 100.0 32 ............................ GTTGATACCTTGTTTAAATTCAACGGTCTTTA 15624 28 100.0 32 ............................ GGATGCCATCGACTGCGAGTGAGCGTAAGCGC 15684 28 100.0 32 ............................ ACCCCCCCATTTCTTGAAGTGCTGATAGTGGC 15744 28 100.0 32 ............................ TGCTTGCAGACCCTTGAGTAACAGCGCCCCCT 15804 28 100.0 32 ............................ ATATAGAGAGTTTAAAAACAGTTTACCTAACG 15864 28 100.0 32 ............................ CAGGCGGGGCGGCCCGATACTGACCCGAGAAT 15924 28 100.0 32 ............................ ACCCCCCCATTTCTTGAAGTGCTGATAGTGGC 15984 28 100.0 32 ............................ TTCCATTCAACCGTAACGCCCTTTATATTAAC 16044 28 100.0 32 ............................ AGACACGCTAATGACTTCTATTACTTTATTTT 16104 28 100.0 32 ............................ CAGCAAGGAACATCGTCAGAAAAAACACTCTA 16164 28 100.0 32 ............................ GTTACGTGGCAAGTATCCGACCCGACGCTGGG 16224 27 85.7 0 ...................-A.A.C... | T [16248] ========== ====== ====== ====== ============================ ================================= ================== 31 28 99.5 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ATTGCTGCCCACGGCGCTGGAGGGCGGCCAGAACTACACGGTGTAGCACCAGATGGATCATCACAGAAATCAATAATATTAGCCCAATCACCATCGTCAATGACATCACATTGGAGAACTCCATCCCCAATCTTTCCAGCCACTGGCTTATTCTTTGTTGCATCACTGCTCCTATAAAGCATCAATCTGACTAAAAGGCCTTAGCCTAAAGGCTATAGGCGCAGGGGGTGCACCTGTTTACCCTTTTTTACATTGTGGTTCTGTATCTTTGTTCGATTGTTGCCCCGCGAGGGGGGAGACATCTTTATAGGCTGTGGTTTATGACATGGTTTGTGGAATTGTACTGTGGTTTTATTATGAGTTATGTTCTGACCCTATTTTTTTAGCTACTGCTAACTCATTGATTTTACATTGTGGTTATCGGTGGTCTAAAAAAAGGGTTTTTTCCCCATTAGCGAAATAAGTATTTTACAAACAGGATGTTATCGTATTATCTTACT # Right flank : ATTCTGGACCATGCGTTGATGCTATTTGGGGAGCAAAATTGCGAGCGGAAGCGCATTTTGTAACTGACAACAGGGAGAATGGCATCTTTTATTACTGACTTTATGAGTATTAGAGTAGGGTAAATAGCAGGTAGCATATCAAGATATACCCGTCATACTTCAAACTGCATGTATGTTGGCTGCGCTCAATTATCCCGGTCACTTACTGGTGTAAGTGCTTGGGGATTTACTCAGTTGCTGGCTTCCTGCAACTCGAATTACTTTGGGTATAGAGAGAGTTATTTTTTGGAAGAATATCTGCTAATAAAGCGCTAACGGAAAAATAGCGCGGTGGATATCCCGCTAAGGAGTTTTTTGGCTATGGAAAACGCTATTCATTCCTCTGATTTGAAAACGATCCTGCATTCAAAACGATCCAATATTTACTATTTAGAATATTGCCGCGTATTGGTTAATGGTGGGCGAGTTGAATATGTCACCGATGAAGGTAAACAATCCCT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 120838-120510 **** Predicted by CRISPRDetect 2.4 *** >NZ_CPXN01000016.1 Yersinia pseudotuberculosis strain IP33038, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 120837 28 100.0 32 ............................ TTTGGTGTCTCAGAGATGACAATTAACAACTG 120777 28 100.0 32 ............................ TGAAATATGGCGTGATAAGCCGGAAGCGCAGG 120717 28 100.0 32 ............................ TCGAAGAGTGCATACAACGCGGTGATGATATG 120657 28 100.0 32 ............................ GCCTCGCTGATGGAGGAAAAGGTCGAAAAAAC 120597 28 100.0 32 ............................ CGCGTCTTGCGCATTCAGCCCGATCCCTTTCA 120537 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 6 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GGAGGAGGAGGGAGAG # Right flank : GNGCAATGTGGATTAAATTTAAGAATTGGTGCATGACAACGACTGTGTATTACTCATCAGTGATAGTAGTGATAATTATCAGCGAATTGTCGTTTTTTGCCGCTATTACATATCTAATAGCAGAATGCTTTTAGTTGATTGAGAGCTGTTGTGAAAGTAGCTCTCAATTTGTCTTTATTATCTATTCGCAGCTTTGCAACCTCTTAGGGCTTCAAGCACACGTTAGTGATATACGCCTGCAAGCCTTCTATTTGGGTTGTGGCAATTCCGATGCGCTCGCGGAGACTGATATAATCCCGTTCAGCGGTGTCAGTAAGTCGGGCGCTGGCATCATTAGGGACGCTGGCGGGGCCTGTGGTTTTGGACACTGACTTTGAACACGTGGCGTTGAGCTGCAACCGCTTAGTGCCATTAGCGATATCAGCACGAAGGCGCTCGTTTTCAGATTTGGCATCTGCCAGCTCCTTGGTGTATTTGATATCAATAGCGGCTACTGCTTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-8.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //