Array 1 28-1176 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAOQ01000039.1 Gordonia paraffinivorans NBRC 108238, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 28 36 100.0 37 .................................... AGCTGTACAGCGTGTGGTCGAGCTGCACAACATGCAG 101 36 100.0 38 .................................... CAGCCCTCCCACTCGTCGGGGTCGAGTGGGTCGTTGGG 175 36 100.0 38 .................................... AAGTACAGGTCGGATGGTTCTCAGTGGACGTTCGATCT 249 36 100.0 38 .................................... CAGTAGACGCCACCGTCGAGCGACTGCGCCACGTAGGC 323 36 100.0 39 .................................... ACGGCAAACAAACCACCACATTCAAACCCGAAGGGTGGT 398 36 100.0 38 .................................... AGTACCATGCGACAAGATGCCGAAGAGAAAGCGATGAG 472 36 100.0 38 .................................... GAAAAAAAAGACTTGCATTAGTGTCGGCGGTCCCGTAT 546 36 100.0 38 .................................... TCCGGCAGATGGCTCTGAGCGCGATCGAGCGCATTCGC 620 36 100.0 37 .................................... CTGCCGGTCCGGTCATCAACGAGATCGACGCCGAATA 693 36 100.0 37 .................................... CTGGCACTGATCGTCGGTCCCGTAAACGCGCCCAGCA 766 36 100.0 41 .................................... ACGTGGGAGCGGGTGCGGGCGATCCTCACCGACCCGGCGCG 843 36 100.0 38 .................................... GCGCTACACAAGATGTATCTGCCGTGGGTATTCAGCCC 917 36 100.0 38 .................................... GAAAAAAAAGACTTGCATTAGTGTCGGCGGTCCCGTAT 991 36 100.0 40 .................................... CTGGTACCGTCTCCAAGCCACACGCCAAGGGTGTACGGAT 1067 36 100.0 38 .................................... CAAAGGCAGGAAGAGAAGCGAAGAGAGCGGGAATCCAG 1141 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 16 36 100.0 38 GCCTCAATGGAACCCGGTCGCGAAGACCGGGAGCAC # Left flank : CGAGGCTAACCAGTCGTTGCCTGCGGTG # Right flank : CCGCTCGCACAGATTACAGGCTTTGACCTGCCAGAATTCAGGCGGTTGCGAGAGGTGCCGAGCAACACATCCCTCTTGGCACAGATCTTCACATCTGAAGTTCTCAAAGAACGCACCGACCAGCATGCGAGCAGTCCCCTGGGTTGCTGCCGTCAAGTCACCACTCGCAAGCCGCTCATATGATGGCCGGCCCGGATTTCGGCAGGTCACGGGGACGTCCCAGCTGTGTTACGGATGCGGCCGCCCCTTCTGGCCCGAGGTCGATCATCACGACAGAATCCTCACCGTAATCGATGACCTCATGAACATCCGCCCTCCAGCGCACCAACTCTAGCTTCGACAGATCGCACAGGAACACGGAGTACTGCAGTCGCTGACCGTACGCTTCCATAACCCTGCACACCCGTCTAAGGCGGGCCGGGTCCGCAATGTCGTATGCGATGAGATACCGCCGCCTCGCCACCGCGAATCACCTCGTCATCATGGGTGTATAGGTCGGC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCTCAATGGAACCCGGTCGCGAAGACCGGGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-14.60,-13.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [16.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 357-20 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAOQ01000012.1 Gordonia paraffinivorans NBRC 108238, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================= ================== 356 36 75.0 36 .....GCC....T...C..A..T....T....A... GCTGGCCGCCGTCAGGACTTCCAGTTCGGATCGCTC 284 36 88.9 45 .......C............T.T.........A... GCGGTCCACGATCGGCACCGTCATGTACTCGGTCAGTTCGTCGGC 203 36 100.0 38 .................................... AAGTACAGGTCGGATGGTTCTCAGTGGACGTTCGATCT 129 36 100.0 38 .................................... CAGTAGACGCCACCGTCGAGCGACTGCGCCACGTAGGC 55 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================= ================== 5 36 92.8 40 GCCTCAATGGAACCCGGTCGCGAAGACCGGGAGCAC # Left flank : GGCCTCACCATCAACGGCGCCAACGTGCTCGCCTTCGACCCGACGCTCTCCTACGACGTCAAGCGGGTGCAGGGCGCCGGCGCGCTGGGCAACGCCGGCATGTTCAACTGCGTCTTCACCGGCCGGGGGCGCATCGCGATCACCACCGACGGCTCACCCGTGGTCCTCAACGTCGATGCCGCGACCTACGCCGATCCGCAGGCCGCGGTCGCCTGGTCGTCGAGCCTGCGCACCTCGATCAAGACCAACGACTCGTTCAACCTGGGCACACTGATCGGCCGCAGCACGGGCGAACGATTCACCCTCGCCTTCTCCGGCCAGGGCTTCGTCGTCGTCCAACCGTCGGAACTGCCGCCGGGCGGCTTCATCGGAGGCACCGGAGGAGGCGGCGACGCCGGCGTCGGCGGGATGCTGGGCGGGTTCCTGGGGCGGTGAGACAGAGCGCCGACGGTGATGCCCTAACACCGCCCACAGAAACTCCTGCGAAATGCGTACTTCTG # Right flank : CCGGTCACGTCGGTGTCTAA # Questionable array : NO Score: 2.70 # Score Detail : 1:0, 2:0, 3:0, 4:0.64, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCTCAATGGAACCCGGTCGCGAAGACCGGGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-13.30,-14.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [13.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,1.01 Confidence: MEDIUM] # Array family : NA //