Array 1 1158992-1155684 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP071462.1 Haloterrigena sp. KZCA68 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 1158991 37 91.9 37 .....A....G.G........................ TGTACGACGGTGACGGTGACGCCGATCACGACGACAC 1158917 37 91.9 36 .....A....G.G........................ ATGGCCCGCGGTGTGATGTACAACGTGGCCGGAGAC 1158844 37 94.6 36 ............G.........C.............. ATGGCCCGCGGTGTGATGTACAACGTGGCCGGAGAC 1158771 37 91.9 34 ............G.........C.........A.... AACATGGTTCTTGACTGGTTGGGATGTTGGCTCA 1158700 37 83.8 35 ....G.A............T.GC.............T TGGTTCGTTTTACCCGCCCCGGCGTAATAGTGGTT 1158628 37 94.6 35 ...A...................T............. GGTCCATCACAACCCGCTCGCGTGAGAGTGCGTTC 1158556 37 94.6 37 .......................T............A TCGTCGAACACGAACAGATACGGGACCGCGTCGTCGG 1158482 37 91.9 33 ......A..G............C.............. TCAGCGTACGCCAGTCCAACGCGCTCGTGATCC 1158412 37 94.6 34 ............G.........C.............. TGGTGTCCGGTGGCGAACAAATACGCCCCGCACC 1158341 37 94.6 37 ............G.........C.............. ATGGTCGTGTTCGAACACGCCGCGGACGGCGTGGGCC 1158267 37 97.3 33 ......A.............................. CCGCAGGTGCACGGGCAATCGCAGTTCTCGACG 1158197 37 100.0 38 ..................................... ATGGTACTCGGCGCTCCGGTCGTCGCTATCCACTACGG 1158122 37 100.0 34 ..................................... AACGACATCGAGTCCGGGCACACCGTGCTCATTG 1158051 37 86.5 36 ......A.............TCC...C.......... ATCACAATCGCGTCCGACCGCTCACGCGAAGCGGGT 1157978 37 86.5 38 ......A..G.A..........C.........A.... GACCTGCACACGTACGACCAGACGGTCGGCGTCGACGG 1157903 37 91.9 35 ......A..G............C.............. CTCGGACGTGCGCTTCTCGGCCCCGGCCTCGGTAC 1157831 37 89.2 34 A................T....C....A......... GAGGTCCCGGACTAATCCCAATTATGTGGATAGA 1157760 37 91.9 35 ......A.....G.........C.............. TCATGGTATCGACGCCACTGGTCGGCTTTCCGAGA 1157688 37 100.0 35 ..................................... GAGGCGATCGCCAACTACGCGAACGCGGTGGAAGC 1157616 37 94.6 35 ......A.................T............ GTCGATCGTCGTGTTCGACCACATCTCGATCATCT 1157544 35 91.9 33 .....................-C.-............ AGTGTGACCCCCAAGAGGGTCGCGAGGCGCTGA 1157476 37 83.8 35 ......A....AG........GC......G....... ATGAACGTCGCCAGTCCGACGCCGGTCTCGATGAG 1157404 37 83.8 37 ......A...T.G.........T.T..C......... AAAGCCCGGCGCCGCGCAGCGGCGCCCGGAACGTGGA A [1157386] 1157329 36 89.2 34 ......A.....G........-....A.......... GCAATTATGCTTACGCTCCCACCGCGCCGCGCCC 1157259 37 94.6 40 ............G.................C...... CAAGAGAGGTCTCTCAGGGCGGCTGAGCGGGTTCAGGCGT G [1157258] 1157181 37 91.9 38 ...........AG.........C.............. GAGGAAGCGATTACGCCCGCGGGGATCTGGTTCGTGAT 1157106 37 91.9 37 ......A..G.............T............. GCGTTCTGTCTCGCGTGTGTATTATCGTCATCTCGAC 1157032 37 94.6 33 C.....A.............................. AAGCGGTAGACCGGCATATCCCAGCGGTCGACC 1156962 37 86.5 35 .....A....G.G......T..C.............. ATGCAGTCGGTCGAGACGGTCAACAACTGGGTCCA G [1156961] 1156889 37 89.2 37 .....A....G.G.........C.............. TCGAAGTTGACGAGGTCGTCGAAGAACTTGACGTCGT 1156815 37 81.1 37 .....A....G.G........CCA.T........... GGGGAATCCCTCTAATGTCGTCTCGTCTCATTGTGCT 1156741 37 91.9 38 ......A.....G.........C.............. CCGATGGATTCGGCGGTCGTGAAAAATTTCGACACGGG 1156666 37 94.6 34 ......A..G........................... TTCCGCCTCGGGCACTACGGCTCCATCGTCGTCG 1156595 37 91.9 34 ......A..G............C.............. TTCCGCCTCGGGCACTACGGCTCCATCGTCGTCG 1156524 37 91.9 35 ......A..G.............T............. CGTGTGAGCCAGTCGACGTCCCGATGCATGATTTC 1156452 37 89.2 34 ......A...T............A..A.......... TCCATCTCGAGGATGCCGCCCAGGTCAAATGCGT C [1156451] 1156380 37 94.6 36 ......A..G........................... ACCATCGGGTACTCGAGATCGATCGGATACCGCCGC 1156307 37 89.2 37 ......A..G...........CC.............. ACCGAACGACAGTTCTGGTTTCCCTCGAACGGCATCC 1156233 37 89.2 37 ......AT.G..............T............ TCCGCCACCTTGTCCTTTCCACAGCCGACGAGATCGC G [1156232] 1156158 37 89.2 34 ...C..A..G............C.............. ATCCGGTGGATCACCCACCCGGTCGCGTCCGAAA 1156087 37 94.6 38 ......A...................A.......... ATGGTCACAGCCCTCCGAGTAGCTGGCCGATCGCGACG 1156012 36 86.5 37 ......A..............-C...A...C...... ACAATGTCCAACATCTGCTGAGCCGGCGGCTCAAACA 1155939 37 83.8 35 ......AT...C..T........TC............ AACATCGGGAGCAGTTCGAGGATCGTCTCCGTTGT 1155867 37 91.9 36 ......A..C.A......................... TCACCGTCACGATGGTCAAGGACTCCGGGAAGACGG 1155794 37 94.6 37 ........................G........T... ACCATTGCGGTCGAACGCGGTGTTTCGGAAATGTTCG 1155720 37 86.5 0 ........A...G............TC.A........ | ========== ====== ====== ====== ===================================== ======================================== ================== 46 37 91.3 36 GTCGAGGCGACGTAGAAACCCAGCACGGGATTGAAAC # Left flank : ATTGAAGCCGCCAATGGACAGGTTATCCTCAATTTTGACGGAGGACCACGCGAGGTGTTTCTCCCCTTTACTGTCGCAGCCATCTCACGTCCGAATCTAATCGACCAAGTGTTTCAATTTCGAGATACCGATCAGAAAGTGCGGGAACTGTCTCTCCCGAACCTTATGGATCGTGTTCCAGAGGTTGCCGACGAGACATTACAGGCAGTGGGTGAATTGGATGAGGAGGCAACACTACCGTCCATCGCCGAGTCAACCGGAAAGGCCCGGAGTACTGTCGGTCGCCATCTCGACAAACTCGAGGAAGCAAACCTTGTCCGGACCCAGAAAGCAAAGAAAACACGAGAAGTGCGGTTGACGCTCGGTGGACGACTTCGTCTCCAGTGATCCAAATTCGTGGACCTCTTTATACCTGTGTATAGCAAGGATTCACGAACTCTATTTGAGTTCTCACGGCAAGAAAAAGCTTTATTTGGCCTCTTAGGGGTATTTCACCGCCT # Right flank : GTGTCGGTCGCCGAGTCCCACGTGCTCGAGGTCGCGTCGAGGCGACGAGAAACAGGGTGTTCAACAGGTATAGACCTTCACAATGAAAAGAAATTGTTGTTAACTACTGGAAATAGTTTATGAATTCAGTCCTCGGGGAAATGGATATTCGTTACGGTGCCTGGGAACTGTTGATCTTCATAGGTGCCGTAAGCGTGGCCCACCGTCTGCTCGTCAAAATCGAACACCAGGACGTACGGCGCCTCATCAGGACCAACCGAGTCGAGATACATCTCGTTTTGTTCCAGGTTGTACGTTGGTGACCCGAGGACCGTCAGCTCCGGCCTGTCGTCTCGAGTTTCAGCTTCTGGCTCGTACGAGCCCTGCCTCTTGAATAATAAGTACTCGATCGCTCTCGCGAAAGTTTCTTTTTCTTCGCTCATACCAAATTTCTGTGAGGTGGGATGGGACATCCACTCTCTATACGGGAGGGAAGATCATTAGTCAATTGGCTTTAACAA # Questionable array : NO Score: 4.91 # Score Detail : 1:0, 2:0, 3:3, 4:0.56, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.09, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGGCGACGTAGAAACCCAGCACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.10,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [54-36] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : NA // Array 2 1168722-1170633 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP071462.1 Haloterrigena sp. KZCA68 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 1168722 37 100.0 37 ..................................... ACCATCTCCTGCTGGCGCCCCGTACTGGAACGCTGCT 1168796 37 100.0 36 ..................................... TGGCAGACATGGCTATGGGATCCCGGCGCGCTGTGA 1168869 37 100.0 37 ..................................... TCGTCCAACTGTCGGGGTCGATCGACGGCGCCGGCAC 1168943 37 97.3 36 ............G........................ GACAACGAGAAGTGGCCGAAAGCAGATCTCCTCGAC 1169016 37 100.0 36 ..................................... GTGAGGCTCAGCACGACGATCACGATGACGAGCGTC 1169089 37 97.3 34 ............G........................ ACCGTGGCCGTCCACGTAGTACGCCGTCCGCTTG 1169160 37 97.3 35 ............G........................ TTCCGACTCGGTCACTTCGGGTCGTTGGCCGTCGA 1169232 37 100.0 35 ..................................... TACACACACGGTCGCGTGACGCGGTAGAACGTCGT 1169304 37 97.3 37 ................C.................... TTCATCACCGGCTTGTCCGCTGGACCACGGATCCTCT 1169378 37 100.0 37 ..................................... CCCTCGGTGGCGACGCGCATGTTCATGCTACGCTGCA 1169452 37 97.3 36 ......................C.............. AGATCGGCTGCCTGTCTGAGATTTGGCGTGAGTTGA 1169525 37 97.3 35 ......................C.............. AACCGGAAACCCGGGTCGGCTTGCAGACCCCCCCA 1169597 37 94.6 35 ............G.........C.............. AACCGGAAACCCGGGTCGGCTTGCAGACCCCCCCA 1169669 37 94.6 34 ............G.........C.............. CCCCAGGACTTGCCAGTACCGGATTGGCCGATAA 1169740 37 97.3 37 ......................C.............. TATCTCGGCTACGGGCCGATCGTGTCGCTCGTGGGAG 1169814 37 97.3 35 ..................T.................. ATGGCCGAGATCGAGGGGCCGGTGCTCGCCGTCCT 1169886 37 97.3 36 ......................C.............. AGGTACAGTCCGGCGAGGGGGATTATCGGGCTGTCC 1169959 37 94.6 37 ............G.........C.............. GTGATATTCTCGCCGCCGATATCGGTATGCGAAAACG 1170033 37 89.2 38 ......G....AG.........C.............. GAGAAGGTCACCGACCCACAGACCGCCAAAGAGATGGG 1170108 37 94.6 37 .........G.............T............. TGCCGGTCGACCAGCCTCGAGAGCCGCTTACGAGCGC 1170182 37 91.9 36 ........A...............G...........T GTACAGTTCGCGCGGCCACCGTTCTGTTCCACGTAG 1170255 37 100.0 33 ..................................... GACACCCGAGCCGACCTCTCGTATCTCGGCGAG 1170325 37 94.6 36 ............G.........C.............. GGAATTCAGTCGGGGATACGCTCGGGGCGTTCGTCG 1170398 36 81.1 17 ..................AA..T..-...CC....T. GTCGGCGAATAGTTGAT C,TCA [1170420,1170427] Deletion [1170451] 1170455 37 89.2 36 ...AG.....T............T............. ACCTAGGGGGTGACACTCAACGAGGATCTGGGGATC 1170528 37 89.2 32 ......G...T.........T.C.............. ACGACACAATGGTAGTGCAGGTTCCACACGAG 1170597 37 78.4 0 ...A..G...........A.A...G...AG..A.... | ========== ====== ====== ====== ===================================== ====================================== ================== 27 37 95.1 35 GTCGAGACGACGTAGAAACCCAGCACGGGATTGAAAC # Left flank : GTGATGTTCGAAGACTCGGTCGTCTACGTCACGACGCAGGGTTCGCAGGTGCGTATCGATGGCGGTCAGGTCGTCATCTGTTAGAGGACTACCACGCCTTAGAGGTGATCCGATGAGACTTGCCGTAACGTACGACGTAAGCAACGACACTAACCGGCGGCATGTGTACCGAACGCTGGAACGGTACGGCGCCTGGCGACAGTACAGCGTTTTCGAATTGGAGATCACGAAACGCGAGGCGTAGAACTCGAGGATGAACTCGAAGAGCACCTTAATCCGAGCGACGGTGATCGAATCCGGCTCTACCGACTATGTGATGCGTGTCTCGATGCGACAACCGATATCGGGGATGAACCTCCAGATGAGCAGTCAAACGTGATTTAGGAACAATCTTCGTGGACCCTTTTGAAGTATCTGTACGGTGGGAGTCTACGAAGTAGCGCTGTATTCTCAACGGTAGAGAGGAAGTTATAGGTGCTTTTAGTCCGAAATCACCCCCT # Right flank : CATTCTACTGTCGCTACTATTTTGGAGGATGTGGCGATTTCTTGACTGATCCTCCGGTCGATGGACTCGAATTCGGATCATTCGTCAATGTTCAGTTCGTCACGTACAATATTGCGGATCCGCTCGTCAAGATCGCGGTTGTCCTTGTCGATATCGAGCGTGGGCAGCGGTCCAAAGTTGTCAATCGCCGCCTCTACACGCTCATCATCGTGCTCACCGTACAGGTACATCTGCCGACGATCATCGTTATTGTAGAGGTCTGTGAGCGTTGAGCGGGGAATGCCAGAGTCCGCGGCAACCTGTCGCTTACTCTCGCCGCTATCGACTCTCTCGAGGGCGTGACGGACGTTTAGGAACTCTTCTGGGTCGACGTGGAGCCGACTATCGTCACCGACGTAGAAGCCGCGTGGTGGCTTCGACGTCCATTTTCCCTCCCGCTGCGCGGCACGGATACCCGAATTGATCCGCTCCAGTTTCTGTTGGTGCTCGATCTTCGCGAG # Questionable array : NO Score: 5.32 # Score Detail : 1:0, 2:0, 3:3, 4:0.75, 5:0, 6:0.25, 7:-0.03, 8:1, 9:0.35, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGACGACGTAGAAACCCAGCACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [13,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.50,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-40] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : NA //