Array 1 269157-270100 **** Predicted by CRISPRDetect 2.4 *** >NZ_UCXT01000003.1 Escherichia coli strain VREC0486, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 269157 29 100.0 32 ............................. CAATTCCCGCAGCGCCTGCCGCAGTATTCACC 269218 29 100.0 32 ............................. TTGAACGATTTTGACCTGCGCCGTTTTGAGTC 269279 29 100.0 32 ............................. CCGCCGTTATATGGAGCGATTCCGGTTTGGTA 269340 29 100.0 32 ............................. TATTCCCCCAGTCACCCCCGCCACCAAAATCA 269401 29 100.0 32 ............................. ATTTTTCAGACTCATCAAAATAATCCTTTAAT 269462 29 100.0 32 ............................. CGAATTTTGCACACTACGTCGCTGAGGGTAAA 269523 29 100.0 32 ............................. CATTGCCTTTGCAGCGTCTTTCCGATCATTCA 269584 29 100.0 32 ............................. AACGTGAGATACGCCTCCCAGCGGCGCTCGGT 269645 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 269706 29 100.0 32 ............................. CTCTGTCGTTTTCATATTACCGGCCTGCCACT 269767 29 100.0 32 ............................. GCCAGGAATGCAGCATTTTGCATGGGAAATGA 269828 29 100.0 32 ............................. CCGATATTTTCCTGACGTCGAAAAAAGAGGAC 269889 29 100.0 32 ............................. CTGGGCGAGGGAGAAACGCCAGCGGAGCAGTA 269950 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 270011 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 270072 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 295800-297231 **** Predicted by CRISPRDetect 2.4 *** >NZ_UCXT01000003.1 Escherichia coli strain VREC0486, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 295800 29 100.0 32 ............................. CGCCCGCGCCAGTAGTTCGCGTGACCCGGCTC 295861 29 100.0 32 ............................. CCTCTGCCGCACTGGCTCCTGACAGCCTCAGC 295922 29 100.0 32 ............................. AATTTTGGCAGCGTGTAAAATCCACTTTTCAG 295983 29 100.0 32 ............................. ACGACGACGGCAGCGCAGCAAACTGGCACGGG 296044 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 296105 29 100.0 32 ............................. CCTACGCCATGTGGATTAGTCCGGCGTTTCAT 296166 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 296227 29 100.0 32 ............................. GTTTCTCATATTTCGCGTCAATCTCCACCAGG 296288 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 296349 29 100.0 32 ............................. GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG 296410 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 296471 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 296532 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 296593 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 296654 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 296715 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 296776 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 296837 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 296898 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 296959 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 297020 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 297081 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 297142 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 297203 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCTTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //