Array 1 93297-92170 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDLR01000001.1 Escherichia coli strain G9 NODE_1_length_660970_cov_166.685, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 93296 29 100.0 32 ............................. TACTAAAAGTCTGGTTCACGAATATCAAAAGG 93235 29 100.0 32 ............................. ACGGCTTCATGTTCTTGGTGATGGGGTTCACC 93174 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 93113 29 96.6 32 ............................C TGATCACATCATGTTTATTCGCGGTCGTATTG 93052 29 100.0 32 ............................. TACTGGAAAAAGCTGGCGACGGTGAGCGCAGC 92991 29 100.0 32 ............................. GGCACGGAATTGTTATGCTGTTCCCCTGACCG 92930 29 100.0 32 ............................. ATCCGCCGCCGGTTAACGCTGGACCAGTTCCG 92869 29 100.0 32 ............................. GGCGAGTCCGTCAGCGGTGCGCCGCTGCAACA 92808 29 100.0 32 ............................. GGACAATGTGAAAAGCTTAATATTCATTACAT 92747 29 100.0 32 ............................. CGACGTTTTCTAATATCACCCAGCAATCAATT 92686 29 100.0 32 ............................. ATTTCATCAAAGCATTAAGGGATGGAATAAAG 92625 29 100.0 32 ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 92564 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACGGGC 92503 29 100.0 32 ............................. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 92442 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 92381 29 100.0 32 ............................. CCAGCCGAAACAACGCCAGCAAAATCGACCGC 92320 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 92259 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 92198 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.5 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 120523-118846 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDLR01000001.1 Escherichia coli strain G9 NODE_1_length_660970_cov_166.685, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 120522 29 100.0 32 ............................. AGCACAAATATCATCGCTCAAACCACTTACGG 120461 29 100.0 32 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA 120400 29 100.0 32 ............................. AAAATAAATGATAATCAGACGGTTAGCAACGT 120339 29 100.0 32 ............................. ACAGTACCGGAGTTTGACGGTGCCAACGGCGG 120278 29 100.0 32 ............................. TTCGTTTTTCGCAGCATTAACTTTTTGCCGCG 120217 29 100.0 32 ............................. TATTCGTAGGGTTTGCGCCGGAAATAGGCGCT 120156 29 96.6 32 ............................T TGATCCGCGACCGCCAGATGGCGCAGCCTGTC 120095 29 100.0 32 ............................. GTGCGCCAGCTATAAAAAACTCACCATCAACA 120034 29 100.0 32 ............................. CGCCACCAGCGATAGAGCCGCAAACAGAGCCG 119973 29 100.0 32 ............................. ATCCCCTGCGTCCTCTTTTGAATAATCGCGGC 119912 29 96.6 32 ............................C AGGTCCTCGTCAGATACAGTAGTCACAACACC 119851 29 100.0 32 ............................. CACTGACAGTGAAGCTGAATTACAGGCAGAGG 119790 29 100.0 32 ............................. TGGCTGTGGCTTTGTTTTTTGCTCTGATATAT 119729 29 100.0 32 ............................. GCGTCCGTCAAAGAGGAAGCCAAAGCCATGCA 119668 29 100.0 32 ............................. GCGACCACGCAGAGCGGCGACAACCTGACGTT 119607 29 100.0 32 ............................. CTATAGCAGCACTCCACCAGCTCGAGCAGCAG 119546 29 100.0 32 ............................. CAAAAAAATAATATCCGGCAGTCTGTACGGTA 119485 29 100.0 32 ............................. TGGCAGGCCGGTAATATGAAAACGACAGAGCA 119424 29 100.0 32 ............................. TCGGTTTGCGCGTATTGTTGTTCGGGGTCTAT 119363 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 119301 29 100.0 32 ............................. GACTATCGCGGGCTGCTGAAATCAACCGGCGA 119240 29 100.0 32 ............................. AGTCGAAATGAGGCGCGTGTTCTGGAGGATAT 119179 29 96.6 32 ............................T GTGTTTGCGGCATTAACGCTCACCAGCATTTC 119118 29 100.0 32 ............................. ACGTGGTCATGGGTGCTGCTGTTGCAGAGCCA 119057 29 100.0 32 ............................. AGCAGATACACGGCTTTGTATTCCGTGCGCCC 118996 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 118935 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 118874 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //