Array 1 64889-63645 **** Predicted by CRISPRDetect 2.4 *** >NZ_UWXB01000002.1 Klebsiella pneumoniae isolate kpneu031, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 64888 29 93.1 32 ............TG............... TGGTGCTCTCAACCGTCACCCGCTGGCTGGAA 64827 29 93.1 32 ............TG............... TCGTGTTGTCCACGGTTACCCGCTGGCTGGAA 64766 29 100.0 32 ............................. AGGTATTTGACCTCATCCAGAAAGGCACAGAC 64705 29 100.0 32 ............................. GCACCCTCACGGATACCTTTTGCACAGTGTTA 64644 29 93.1 32 ............TG............... TTACCAATGGGGAAAAATCTTCATTTGTAAAT 64583 29 100.0 25 ............................. AACATCAGTGGAAATCCACTGCGGC Deletion [64530] 64529 29 96.6 32 ......T...................... CGAAAACGGCAACCTTCATAAAAACGTCTTTT 64468 29 93.1 32 ............TG............... CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG 64407 29 100.0 32 ............................. TGTGTGTTGGCGTTCGTTAAATATTGTTAGTA 64346 29 100.0 32 ............................. CGGTAACGCAAATGTGATCCGATGTCGTCAGG 64285 29 93.1 32 .............T.A............. AACAATTTGAAGTTTCTGCGCCAGGTCGTTTC 64224 29 100.0 32 ............................. AGCAGTTCGAGGAATAGTGACAGGCAGTGCAG 64163 29 93.1 32 ............TG............... TTAATGTTTTGTTAATTTATGAGTGTGGTGAT 64102 29 93.1 32 ...........CG................ AGCAAATCGAAAATCCGGCTGTTTGAAAAATG C [64088] 64040 29 89.7 32 .............T.A............C CATGAGCCTGCGCACTCTGACGCGCACCTGCT CC [64027] 63977 29 100.0 32 ............................. TGAGGCTGCTGACGGAGAATTGGGACCTGTTC C [63966] 63915 29 96.6 32 ..............C.............. CCGACCCGGTGCCCAGGAGAACTGGCTGAATA 63854 29 93.1 31 .............G.A............. TTCCCTGCACTAAGACGCTGGTGGTCGCCAC 63794 29 93.1 32 ...C......................T.. CCGGTTCGGATTTTGCGAAACAGGTGCAGGGC 63733 29 96.6 32 .............T............... GGCATGAGCGAGAACCACTGCGAGAGTGTGGT 63672 28 86.2 0 ..........A.....T......-....A | ========== ====== ====== ====== ============================= ================================ ================== 21 29 95.4 32 GTATTCCCCCCGCATGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : CATAGAAACCGCAATGGTGGGGCTTTTGTCATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCCTGGATAACCCACTTTCTGCCATCTTTTGTCTCAAAGGGTACTCCCACCGTGGCAGGTGGGAGGGGAATTTGAATTGACGCGATAGCGTTAAAGGAACATTTAGCCGCGCTGGTGCTGAATGTAGCGCTTTACGACTTCCAGCGGTGCTCCACCACATGACCCAACAAAGTAGCTGCGTGACCAGAGAACAGGCTTACTGTACGCCTCCCGCAAATCCAGAAATTCATTCCGTAGCCGCCGACTTGTGACGGCTTTCAGGCTGTTAACCAGTTTTGACAGTTGCACAGTTGGTGGGTATTCGACCAGCATGTGAACAAACAGTTTTAAACAGAACCAAAGCAGACTGGCAAGGTTACAGCGCCAGCTTGCCCGTAAAGTGAAATTCAGTGCGAACTGGAAGAAGCAGAAAGCAAGAAC # Questionable array : NO Score: 5.49 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.48, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Alternate repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 312861-308933 **** Predicted by CRISPRDetect 2.4 *** >NZ_UWXB01000001.1 Klebsiella pneumoniae isolate kpneu031, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 312860 29 100.0 30 ............................. CTCACGCTGATACCTCGGAAAAAGACGGGC 312801 29 96.6 32 .G........................... GCGGGCTGGGTTTTGTCGACTCTGCCGATCCG 312740 29 100.0 32 ............................. TAATATTGATAAATTCGATGAAGTAACCGGAA 312679 29 96.6 32 ............................A TCGAAGTACCAGCGCCGCACCGTGTTTTTTGC 312618 29 100.0 32 ............................. GTGGCCGGTGCTGCCAGTACGGTTACCGAAGT 312557 29 100.0 32 ............................. CATCCACGCTTCTGGCCACCAGGCAGATAATC 312496 29 100.0 32 ............................. GTGCTCCTCTTCCAGATACTGGGCCAGGAGCT 312435 29 100.0 32 ............................. TACAGGACGACAGCATCCTGGAACATTTCGAC 312374 29 100.0 32 ............................. CTCTGCGTGTGCGCCTCCGCTACGAGGTGACG 312313 29 100.0 32 ............................. TGAATATTCATTTACTAAATTAGAGACAATTC 312252 29 100.0 32 ............................. CGGATTAAACGTAAGGCCGCGCGCTGGCGTAA 312191 29 100.0 32 ............................. GTGGTTTGTTACCGTGTTGTGTGGCAAAAAGC 312130 29 96.6 32 A............................ GAACGGAGGAATATAAGAACAAAAGCCCGCAG 312069 29 100.0 32 ............................. TAAACCGCTGGCGTGGTCAGTTGCGTGGCGGT 312008 29 100.0 32 ............................. GGCGCCGGCCTGATCACTATCGGGTAACGGTG 311947 29 100.0 32 ............................. GGCCTGAACCAGAGCATGATCTACACCTGGAA 311886 29 100.0 32 ............................. ATTGGGTAGAGCAGGCGAACGGATGTCTTTTT 311825 29 100.0 32 ............................. TTTTCACGGTCGAAGTTGTGCATGCTTTCTGC 311764 29 100.0 32 ............................. TCGACGCCCCGGTGTGGGAAGACTTTGGCACC 311703 29 100.0 32 ............................. CAGCGCATACGGGTTAAACCGGATCACCTCTT 311642 29 100.0 32 ............................. ACATAGCGCCCGATACGCAGCGCCAGCGGGTA 311581 29 100.0 32 ............................. GATCGATCGTTATTGTTGAACCGCACTATGGT 311520 29 100.0 32 ............................. CTTTTAATAATATCATCGGCAATGTCCTTATC 311459 29 100.0 32 ............................. CGGGACCGGATCCGCGTGGGCGACCAGGATTA 311398 29 100.0 32 ............................. CACCGATATTCAGTGCGCCAACGCCATAGCAA 311337 29 100.0 32 ............................. CCGAGGTTTTTCATACCTTCGGCAGTCGTAGA 311276 29 100.0 32 ............................. CGGAAATTTTGATTAGTTGAATCTGTGCCATT 311215 29 100.0 32 ............................. CCGACTTGGGACGAGGATCCGGCGGAATGTCG 311154 29 100.0 32 ............................. TAATGGCAAAACCATGACCTGATCCGGGCGTC 311093 29 100.0 32 ............................. CCTGAATCTTCACTTCGTCGATCATTCTGCGC 311032 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 310971 29 100.0 32 ............................. GTAACGCAGACGGCGAACGTCGGATCCATTGG 310910 29 100.0 32 ............................. GACCAGAAAGCCTGGGCATTGTTCCGCTCATT 310849 29 100.0 32 ............................. CCCCCGGCCGCGTGGCCGATTGCCATTACCGC 310788 29 100.0 32 ............................. TATACAGTATTATCATAGCGAATTCCCATCGG 310727 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 310666 29 100.0 32 ............................. GCACCAACGTTTACGGTGCGGTGGTGAAACAA 310605 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 310544 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 310483 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 310422 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 310361 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 310300 29 100.0 32 ............................. TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 310239 29 96.6 32 ........T.................... ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 310178 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 310117 29 100.0 32 ............................. CTGCAGGTAAATGACTGGATGGGGGAAGAGGT 310056 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 309995 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 309934 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 309873 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 309812 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 309751 29 100.0 32 ............................. TCCCCTACCACCCACTGAGCAAACTGGTAGCA 309690 29 100.0 32 ............................. CAGATACCAACGGTTACTACGGCAATCAGCAC 309629 29 100.0 32 ............................. AAGGTTGACCTGTTGTCGGCAACCATCGAGCC 309568 29 96.6 32 .........A................... GAGGCGCGCGTTGTCGTCGGTGAGATGCGCGA 309507 29 96.6 32 .....A....................... GCCATTCGTGCTTCTTCGCTTTGCTGCATCCA 309446 29 100.0 32 ............................. GAATATAAAACCAGATTCCATATAGCCCTGTG 309385 29 100.0 32 ............................. CCGGTTACGGGGATGACTGCAATTCGCTCCTG 309324 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 309263 29 100.0 32 ............................. GCGGCGTCAGGTGTGTGGCAGAAAATTATTGC 309202 29 100.0 32 ............................. TCGTCTGAGTTCCGGCTTACGCCGTGCCGACA 309141 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 309080 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 309019 29 96.6 29 ............T................ GGGTTCACTTGGGTGAAACTGAACTAACT 308961 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================ ================== 65 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AGGTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTA # Right flank : GTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGATTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //