Array 1 165209-163026 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMDX01000007.1 Haloglomus irregulare strain F16-60 NODE_7_length_179112_cov_160.784, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 165208 30 100.0 35 .............................. CGGCGCGAGCTGACGACCGACGGTGAATGGCTCGT 165143 30 100.0 33 .............................. GGGCTAACTGTCCGGTTCAACAGTATGCGTCTC 165080 30 100.0 34 .............................. GGCCGACCAGCGTAGACCGTGGCCCGAACTGTCA 165016 30 100.0 36 .............................. AGATACTCAAGTTGGCACACTTTCGGATGGGGAGTT 164950 30 100.0 35 .............................. CCGACACCCGCGACGACCTCCGGGCGGCGAAAGTC 164885 30 100.0 36 .............................. CCCCTTGCGGGCGCGGCCCGTAATTCGGCGTGTCCC 164819 30 100.0 33 .............................. TTCTCGTCGTATTCAATAGTCCACGACAGCTGA 164756 30 100.0 35 .............................. GAGTGGAACGTGGAAACGGGTCGCATTAGCGATGA 164691 30 100.0 36 .............................. AGTTGGTCACTGCGGAACTTCGGCAGTGCAGGGATG 164625 30 100.0 36 .............................. GGAGGACTTCGGGTTCGTGCCGAACTCGGTCTGGGT 164559 30 100.0 34 .............................. GGGAAATTGGCGTCATCCAGCCGCCGCTCGTGCG 164495 30 100.0 35 .............................. TCTGCGAGTGACGACGGCACGGTGAAGGCCGTCGA 164430 30 100.0 35 .............................. GGCGAACACAACGGCGAGAAACAGCTTCGCGTGAA 164365 30 100.0 35 .............................. CACCGACGCGGGCGCTAAGGCATGATTTCTGCGCT 164300 30 100.0 35 .............................. CGCGTGGAGAACGGCGGGGCCGAGTCCAAACCCGC 164235 30 100.0 36 .............................. GAGCGGTTCGCGGGCGAGGGCGCCGACCCGGTGCTC 164169 30 100.0 36 .............................. GAGCGTCCGTATCCCAACTGCCTCGTTCACGAACCG 164103 30 100.0 36 .............................. ATCCCACGGATAGGGTATCATGGATAACAGCATAGT 164037 30 100.0 34 .............................. AGTGGCACATAGGTTAGTGACTTGACACGTGGTA 163973 30 100.0 34 .............................. CCGCCTGTGATGGCTTTCTGCCCGTGTGCGCCGT 163909 30 100.0 35 .............................. ACGGATACCGAGGTTATGCCCCTCATGTACGACGA 163844 30 100.0 37 .............................. TCGCGGTCAGCGCGCTGCTGTGGGGCTTGCTCGACGC 163777 30 100.0 36 .............................. TCGCGGTCGTTCTGGATGGCCGCGACGGCGGTGGTG 163711 30 100.0 36 .............................. CAGAGACGATGTCTGGCTGGTCTGGGTCTTGTGATT 163645 30 100.0 34 .............................. GTGATGATGTCCGGCTCCCAGTACCGAGAGACGA 163581 30 100.0 35 .............................. AAGCCAGCGGGTTACAGTATGTAGTGACATGACGC 163516 30 100.0 36 .............................. GGCCGTTTATCAAACCCGAACGGTGGCAACCCGAAC 163450 30 100.0 36 .............................. TGCTGAAGATCGGAGCTAAGGCTCATAGTTGTGATA 163384 30 100.0 36 .............................. GGATGGTTCACGATGCGGGAAGTGGCGATCCCGAAT 163318 30 93.3 36 ....T.................C....... CTTTCATCCCGATTGCCGTCCCACCACCACTCGACT 163252 30 100.0 36 .............................. GACGGCGTCTGCCGGCCGGATTGGTGCCCGGAGATA 163186 30 100.0 35 .............................. TTGACGCCCGTGACGACGAACTCGCCGTCTTCCTT 163121 30 100.0 36 .............................. GCGTTTTGAACGCCGCCCCAGCAAGCGGTCAGGTCG 163055 30 96.7 0 ......................C....... | ========== ====== ====== ====== ============================== ===================================== ================== 34 30 99.7 35 GTTCCAGATGCACCTTTGAGGGGTTGAAGC # Left flank : CGAGGCATCACCGAGGAGATCGAGGCCTGTGAAGGGGAACAGTTGCTTGGACGCTCACTCATCGGTGACTACGAGACGGTGGACGCGGTCGTCGGCGTATCTCCGGGCGATGAAACTGCGCTCTCCGAGACGGCCGCAAAGTTCCAACCGGTCCCAACGGGAGCGGCCTACGAGGCTGTAAAGGGACTGTCGAGTCTGCGGGTATCGGTCCCCAAGACGGTCATGGAATCTGCAGGCAAAATCCCACGTCTTGATCGGCGCTCACGCGGTGACACAGAGGGCGTACAGTTATTCGAGTACACCAACCAGCCGGGGCTCGCGTACAATTTGTCCGGAGCAGGGCTCGTTGAGGATGAGGAAGGAATCGGAAGTCGATTCACGATTCTGTAACATCCGACTATCCATCGACCCCCCAGGGGGACACAGGGAATTGAGGGTCGATGGAAAATCTCATTGCTAATCCGCCTCACTAACCCTATATGTCCGTTGAATCGGGCATG # Right flank : TTGTTGTCATCCGGAACTTCCCCGGGTTGCGTGTCACCCGAGGAACCCTGTAACAACGCGTCCTCCAGCGATGACGTTCTCCCGGCCAGACTCTCGTACACGTCTTCGGTGGGGTGGTACGCGGTGTATGCGCTGTAGCCAGCAAGGCCGCGCCTCCCGGTCGCGACGAATAGCGACGGGACATCCTCGGACGGGGTCTTCCTCGCAGTACAGGTCGGCGATGGCGAACGGGCGGAACATGGATATCGATCAGCAGACCGCCACCTCACGGCGGCCTTGATTCCCTTCCGCAGGCAAGCGGCTGGCTGCTCACCGCCCGCAAGGAGCTGCTGCCCTCGCGAAGGCTATCCCCGAGATCGGCGACGACCACGGCCATGTCGCCGCCACGTCTTCGGCTGAGGCCCGCCGCGATGCTCCGCGCGTCCGTATAGATGTATGAGGACTGAACTAAACAGCCCGGCGCTCTCGACCTCGACCGCGGTCGCTGTTACAGGCCACGC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAGATGCACCTTTGAGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.10,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 2 174869-175880 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMDX01000007.1 Haloglomus irregulare strain F16-60 NODE_7_length_179112_cov_160.784, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 174869 30 100.0 36 .............................. AATTGTCCGAACTACGCGGGCAGCCCGTGTACGCCG 174935 30 100.0 35 .............................. CGTCAACGGAACGGTGACGGTGCCCTTGGCCGGCG 175000 30 100.0 37 .............................. CGGCGGGTCGTCTCGACGCTGTCGGACCGGTATGATG 175067 30 100.0 34 .............................. TTTATCGACCCGACGGAGCTGCGAACCGGAGGGG 175131 30 100.0 35 .............................. GAGTGGAACGTGGAAACGGGTCGCATTAGCGATGA 175196 30 100.0 35 .............................. TCGACGTTGCCGACGCTGACGACGCGACTGCTCGC 175261 30 100.0 36 .............................. GCAGGACAACGACCTGCTACCGGAGAGCCACCCGGA 175327 30 100.0 35 .............................. GCGGGCGGGCGGCGCGCACTGGCTGACGGGCATCA 175392 30 100.0 36 .............................. CACGACGACCCGGACGGCGTGTCCGACGTGCTACAC 175458 30 100.0 36 .............................. GGCGAACCCGACGCCGACGACTACCGCCTCGGAGGT 175524 30 100.0 36 .............................. ACGAGTCGCTCGCAACGCCGTCGACTGGGAATCGAG 175590 30 100.0 35 .............................. ACGGCGCGCGAGTATGTCGAGGAATGGCTGGACGT 175655 30 100.0 35 .............................. GGCCCTCAGTCGTCGGCTTCGATTTCTCCGCAACC 175720 30 100.0 35 .............................. GGTCGGACACGGCGGTCGCGGCCGTGATTGACTGT 175785 30 100.0 36 .............................. TGGCCCAGGTATCAGCATGAACAGTTACAGATACGT 175851 30 93.3 0 ..C..........................T | ========== ====== ====== ====== ============================== ===================================== ================== 16 30 99.6 36 GTTCCAGATGCACCTTTGAGGGGTTGAAGC # Left flank : TTAGACGAGACGATCGAACATCCCCGACTGAATCGGAAGGTCAGTTACAAGACACTCGTCCGCACGGACGTGTACAGTCTAAAGAAGCATCTCATCGCGGATGAGCCGTATCGCGCTACTGAGAGGTGGTGGTAAGTGCTCGTTATCGTCGTTTACGACGTTCCTGCGCAGCGGACACGGATTTACAGGAAATTGCTCCGGCAAAAACTGGAGCACATCCAGCACTCAGTGTTCTACGGCAACCTGACCGAAGGCCAACTGACGAAGCTCAAAAACCAGATTGAGGATCAACTCGTACCCGAGGACTCGGTGATGGTGTTCGAAGCCGAGACGGAGGATTACGTGGACTACACCGTGTTCGGTAGCGCCGAGAGTCCAGGAAGCCGATTCACATAGGTCGGAGTCCATCGACCCCCGGGGGGAGCCGGGAATTGAGGGTCGATGGAAATCTTGATATGAGAATACCAGTATAGAGGCCTATGCCCCGCAGTTCAGGCATG # Right flank : TACTTTCCGACCCTTCTGGGTCGTTGACGACGGCGACAACGGGGAGGTTCTCAACGACGAGCCCGCCAGCGATGACGGCCGGCCCGGTGACTGCGACTGCGGCGACTGGAACGCCGACGGGCCGCTCCCCTGTTGGCCCTGCTACCGGGACGGCTTCGCCGAACCGGCGACTGACTCCGAGTAGCCACCCCCTCTGCCGGTACTTTGCTCAGCCCTTTCTTATCTGGGAGCGGCTCAATCCCCGGTGCCGTGGACATCGGCGACTGTAACCCCGTTTTTGATAAAGTGGCCGCAAAATGGAGAACATCATGCCGAAGCGCGATGGGATGCTATTCGTCGATCAAGAGAACCTCCGCAACGGGGCTAATAATTATAACTCTGATTATGAATACGATTTCGTTAATCTCCGGGGGGAACTCATGGAGGGCCTCTATACTGTGAGATCATACTGGTTTGCTTCATGGCACCCCGAGTACGGACGACCGAACAATTTCTACACG # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAGATGCACCTTTGAGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.30,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA //