Array 1 116438-115310 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTDB01000004.1 Flavobacterium columnare strain 1372 NODE_4_length_117386_cov_19.6933_ID_23851, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================================================== ================== 116437 35 86.1 82 A..A.AA-............................ CCGTTTCAAAACATTAGTCATCGTAAGTTGGTTTACAAACACCAAGTTAATATTTATTATAGGTGTGTTTGTGAATCTCCCT 116320 36 91.7 82 C.G..C.............................. CCGTTTCAAAACATTAGTCATCGTAAGTTGGTTTACAAACACCAAGTTAATATTTATTATAGGTGTGTTTGTGAATCTCCCT A [116313] 116201 36 91.7 30 C.G..C.............................. GGATTTATAAAACAAAAACAAATAACAAGT A [116194] 116134 36 100.0 30 .................................... AATAAATGGCAGCAACTTTAAGAATACCGA 116068 36 100.0 30 .................................... AAATCAAACAAACTTGTGGTAACAGTAGCT 116002 36 100.0 29 .................................... ATATTCCTTTTGTGAAGATTCGTGGCTAA 115937 36 100.0 30 .................................... TTCAATCATTTACTAAAAAATTCCGTTGGT 115871 36 100.0 30 .................................... TTTCAAGCCATAACATCGCCTCATCGTAGC 115805 36 100.0 30 .................................... CCTGTAACCTTTCAGCGGTTTAGTTACGTT 115739 36 100.0 30 .................................... ATTTTAGTAATGTTTAATCGTGTCATAACT 115673 36 100.0 29 .................................... ACGTTTTTGGATGGACAGACTTAGAGTAT 115608 36 100.0 29 .................................... ATATTCCTTTTGTGAAGATTCGTGGCTAA 115543 36 100.0 30 .................................... GTTGGATTGTCGCACACAGTTGTACAGCGT 115477 36 100.0 30 .................................... TCCAAATGCAACCATAAAAGTATACCCCAG 115411 36 100.0 30 .................................... GATTTTGGTATTGTGATTTGCGGAAGTGGA 115345 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================================================================== ================== 16 36 98.1 37 GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT # Left flank : TTGCCGAATTTAAAAAACGATTAAATGTATAATTATGATTTAAGCGAGCAAGCTAAAATCGATTTGTTGCGTATTTATGAATATAGAATTGGTCAGTTTGGTCTAGACCAAGCTGATAAATATTTTGACATGATGCACGATTGTTTTAATAAAATTGCTAAAATCCATATTTATTCCCTTTGGCATCAAATATTAAGTCAAATTATTACAAATGTGTTTGCGGAATTGACACCATCTATTATAAAGTTGTTACAAATGGAGTTATCATTACAACAATAGTCGGAAGGCAGGATTTTGAAATTCAAAATTTAGTTCATTGACATACACTATCAAATCGCAAATAACCAAACTTCATACAGATTGGTTTGATTAAAGATTAGAAACCGAGGGACGAGTTTCGGCGAAGTCAAAACACGAAATTACTTATTCCCTGAAACAATCGCACGAACTGGTTGTGGTTTACAAACACCAAGTCAATATTTGTTATAGGTGTGTTTGTA # Right flank : AGTTGATGTTTTATCTTCTAATTATCAAATGGTTAAGTTTTGATATCGTTAAAAAAAATGCTTCTTTTTTGGGGTGCTATGCCAAAATTGAAGCATTTTTTTATTCCTAAAATAATTCAAGTTGAGTGGGTTGAGGTCCCGAAGGAATTTCTACTTTTCCCCAGAAATTTTGTATATTCCCAAATTGCTTGTCTGTAATTCGTAATATACTTACTTTTCCTGAAGGAGGTAGGAGTTTTTGTACACGTTTTTCATGTACATCAGCACTTTCGCTACTCGCGCAATGTCGTATATACACCGAGTATTGCATCATACTGAATCCATCTTTCAAAAGTTGGTTCCGAAAGCCAGAAGCATTTTTTCGGTCTTTTTTAGTATCAGTAGGCAAATCAAAAAATACAAACAACCACATGATTCGATACCCGTTTAAATCCATAATTTTGGGTATTTTATCTTTTTGCGCTCCCCAGCAAAACACTGTTGCAACGAACTAGCCGTTT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.48, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 911-1608 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTDB01000059.1 Flavobacterium columnare strain 1372 NODE_59_length_17295_cov_14.9675_ID_23963, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================================================================== ================== 911 29 80.6 35 C....CCC.--.................... CCAACCAATCTTAACTGCTGAAATTACGCAAGGTA 975 31 100.0 35 ............................... CCAACATGGAGTCAGTGGACATGTCTGATCATGTC 1041 31 83.9 62 ....................A..AT.AA... GGTTTTAAACGCCCACGCGCCTCCTGGCTACATCGCTAAAATAGTCCACTGGACTATTTCTT 1134 31 74.2 34 AAC.CTCG.C..................... CCAACCCGTTTAAAACAATGGTCAGAAGAAGGCG TC [1146] 1201 31 100.0 34 ............................... CCAACAAGAATTAATAAAACTGAATTTGAAAAGT 1266 31 100.0 35 ............................... CCAACAATGGGTATCTATTTTGAAGGTAAAGAATT 1332 30 77.4 86 ...................-...TCAT.CA. GAACTTCTTAAAAAAACAATAAAAAAGAACGTGAGTAAAATAAGGGCTTTCCCAACGGTGAAAAAAGTAACGATTAGTGTTTAATT 1448 31 100.0 33 ............................... CCAACGGTGGATAGTGAAGGAGTATTCAATGGT 1512 31 96.8 35 ...................C........... CCAACTCATAAGCTGTTTGCTAACGGTCTCCGTAT 1578 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ====================================================================================== ================== 10 31 91.3 43 GTTGTAGATACCCTTCAAAATAAGGGCTTTC # Left flank : AAATCCAAAGTCGGTAAACGGATTGATGTATTTAGCCTTCATGATTCCAAATGGTTTGATGATTCAAATTTACAAAAATATCTTAGGTGTTGAGGTTAAATTATAAGGAAGTTTAGGAGGCAGTATATGGATCATATTTACTTGATTGTGTTATAGGTTTGTTTTTGTTATTTTTAAAAAAGAGGTATTTCTATGAATAAGAATTATGGTTTATTTATTTTTTAAATAATTAAATTTGGTTTCAAACGCCTGCTCGCTATTTTGCTAGAGACTGTCCAAAAAGTTCGCAATCTTGTGATTTTGACCAAAGGAAGAAATTACATGCTATTGATTATGAGACTCCTTCTACGTAGGAGTGACAAACTGGATGTTGATTTAGTACTTTTTGGACAGCTTCCTTAACGCTCGTCCCTCCTTCAAAAAAAAATGAATTCGGTTTTAAACGCCCACGCGCCTCCTGGCTACATCGCTAAAATAGTCCACTGGACTATTTCTTAACG # Right flank : CCCAACTAAGTGTTGGTAAGCCTCTCGTAGTAAGGGATTACTACAATTTTTTATACAAAAAAATGAACTTTTTTTGTTTTAATCACTGCAAATGTAGTCATTTTTTTAATCCTAATTTAAAATGTCAAAGAGCAATTGTATTTAGACCCGTGTTTTATCTTTTTTCTTTTTGTTTTCCCATAATTCTGTTGTTATGGTTTCAAAAACTCGGTTGAAATAGCAAGCAAAGTATTCTTCTTCTTTTTTTGGAACAAAACGAGTCGCTAAATCGTAAATAAATTTAGGTGGATATTGATTGTGCGCCATTTTGTTGCGAATGATAATTAACACAATCGCTTTTTTAATGATTGGATTAGTAATTGTTTCATCCAGTTTCATCATTGCTTCTACTTTTTCTGGCAGTTTATCAATTTCATCTTCGTTTGCTAAAATAGAATGGGCTAAATACTTTTTAAAATTTGGATTACCCTCTCTTTCAAAATCGGCTGGATGTATTTGCG # Questionable array : NO Score: 5.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.56, 5:0, 6:0.25, 7:-0.64, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGATACCCTTCAAAATAAGGGCTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.30,-5.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [10-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //