Array 1 21813-21387 **** Predicted by CRISPRDetect 2.4 *** >NZ_QPLQ01000011.1 Haloarcula sp. Atlit-47R P_contig000011, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 21812 31 96.8 35 .....................G......... TCCTCCATGAAGCGAGAACCGAAGTACCCGAGACG 21746 31 100.0 36 ............................... AAGACCAGCAACACGAGCGAGTACCTCACCAGGGCC 21679 31 100.0 35 ............................... GAACTGAAAGCGACGAAACGAACCCATGCAGACGG 21613 31 96.8 34 T.............................. GGGCTTGCTATCGCGGCTTTCGGATTCACGATAC 21548 31 100.0 35 ............................... GACCCGTGGGATACGGTTGTCGTGTTCCTCGTGCT 21482 31 87.1 34 ........AC......C....G......... GGGCGACCGCTGGCACTCGGCTCCACCGCTACGT 21417 31 74.2 0 C.......AC......C..C.G...G.G... | ========== ====== ====== ====== =============================== ==================================== ================== 7 31 93.6 35 GGTTTCAGCAGAACCCATGTGAGATTGAAGC # Left flank : ATGAGGTCATCGAGCACTTCCCGCCGAGGGGATGCAATCCGGACATATCGACGGTCGCCTTCGTTGATATGCCCCCATGGAAACACGTTGGAGAAAGCGAAGCCAACGCCATGGTTGGTCTCGTGTGTTTCGGCGTATTTTTGTTTGTCTTCGAGAGCGCGCCAAATCCGTCCGCGGAGCTTGTGATGATACCCTGTATCGTATTCCGCGTCAGCAATTGAGTCAAGTGCCAGCTCAATGCGCACGGGTCACATCACCCCCACCTTGCTACCAGTTTTTGCCATATACGCACCATTACCCTAACCCCGCTTGTAATTTTCCCCGCATGTATGACATACGCTCCCTGATAGGATTATTATGACCAGCAGATAATTACGGTTCCTTCGCAGGATTATCAGCATTACCATCAACCCCCAGGGGGTGACACAAGAATTGGTAGTCGATGGGAAATTCTTTGTGAAACCGAGGTCAATAGGTTCTCAGACCGCCTAATTGGGGCG # Right flank : TTATGCATCTTCTGACAGCGAGGGAACCGCGCCGTGAACGGCGCGGAGGATGTCACTGTGGCAAGAGCCAATTCTGGAGCGGACACACCACCGTTACATGTGAAACGCCTACCGCCGGACACACCACTCTTTCAAGTGAAGGGCTCACTGGTAACCACACCACGATTGCAAGTGAAACAGCGTCCGTCAGACACACCACTCTTTCAAGTGAAGCGGGTTGCCCCGCCCGCTACAAACCTTCACATGAAAGGGTGGAGTCCCCCCGTCATCCAACGTTGTTCATAGCGGCAATGTCACGGATTGTATCGATCTCCGTTGTGAGATGAAGGACATCAGACATCGCCTCAATGGCGCTCGTAAACGGAACATCAAGCTCGTAATTGTAGTAGTTCCCCCGAGAACCGCTCCGGTTTTCGTGCGCTGAGAGGATACCTAACATCCGAAGGTCTGACAGGTGGTTATGGAGCGATCGCTGGCCGAGCGCATCGGTTTCAGAGGAC # Questionable array : NO Score: 2.79 # Score Detail : 1:0, 2:0, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTTCAGCAGAACCCATGTGAGATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.61%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [12-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 2 31746-33474 **** Predicted by CRISPRDetect 2.4 *** >NZ_QPLQ01000011.1 Haloarcula sp. Atlit-47R P_contig000011, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 31746 30 100.0 37 .............................. CAACGTTGGTCGTTTGCATCTGGATCAAGCGATGCGC 31813 30 100.0 35 .............................. AACCTGTATGTCCCCGGTGAGCATCGTGGACCCGT 31878 30 100.0 36 .............................. GTTTCGCCGTAATGAGGTCTCCGAGGGATCGCTCGA 31944 30 100.0 42 .............................. GACCTTTTCCGTGACGATTTCCGCGCCGTTGTCGTCGAGGAT 32016 30 100.0 35 .............................. TGCGGTCAATTGCGGCTCGGTTCGCCCACGACGGA 32081 30 100.0 34 .............................. TACCATCGTCGTTCGTCCCGTCCTGTGCGCGGTA 32145 30 100.0 35 .............................. AAACGCGTTCTCCGCGAGCACGGTGTCGACGCGCT 32210 30 100.0 36 .............................. GGAGCGGACATTCAGAAGCGTCTGACGAATCGCATG 32276 30 100.0 35 .............................. AACCCCTATGTTGACGATTCAAACTAAACAGAAAG 32341 30 100.0 33 .............................. CTGAAGTGCAATCTGGCGAACTCGACACGTCAG 32404 30 100.0 34 .............................. ATCGACGGGTCACGCGTGCCGGACGACAGGAAAA 32468 30 100.0 34 .............................. ATCGACGGGTCACGCGTGCCGGACGACAGGAAAA 32532 30 100.0 36 .............................. GCGAAGCCGGCGCTGTCGAACTTGTGGACCCTCACG 32598 30 100.0 35 .............................. ACGTCGAACATTTGTATCCAACGACGTGACGCCCA 32663 30 100.0 35 .............................. GACGCTGGCGCACCGGTTCAGGAGGTTAAGATGGT 32728 30 100.0 34 .............................. ACATGGCAAAAGACAACAACAGCAAGAAACTGTT 32792 30 100.0 37 .............................. GACTTTGCGGAGTACCGACATAAAGGCAATGACCGCG 32859 30 100.0 37 .............................. AGTGGGTTGTCCGTTCGTGCATACTCGTTGAAATCGG 32926 30 100.0 36 .............................. ACTTCCGTGATACCCACTAACAGGTAATTGAGATTT 32992 30 100.0 32 .............................. GTGGCCTGCCAGTCGATACCGCCGAAGCCCGA 33054 30 100.0 36 .............................. TGTGAGCGGTGACGTGCCGATACCTGAGTCTGCTGC 33120 30 100.0 35 .............................. ATCGGAGATGATTCCTGTCGGGCAGATGATTGCGA 33185 30 100.0 35 .............................. GTCACCTCTTCGCCGTCATCGCCGGTAAACGACTC 33250 30 100.0 35 .............................. GAGCAGCAGGCCGCAGACAGCGGCGGAGGCGGCGG 33315 30 100.0 36 .............................. TGTTGCCAGTCCTGTGGCTGGCCGTGTATAAACCCG 33381 30 100.0 34 .............................. GCCGACCGCGTGGACTGGATACCGGCGCAGGCCC 33445 30 96.7 0 .............................A | ========== ====== ====== ====== ============================== ========================================== ================== 27 30 99.9 35 GTTTCAGACGAACCCTTGTGGGATTGAAGC # Left flank : CGAAAAGTCAGCTTCAAGACCTTAGTTCAAACTGATGTATATAGTTTGAAGAAACATATTCTCACTGGAGAATCGTACCACCCAACGGAACGGTGGTGGTAAGATGCAGGTCATCGTTGTTTATGATGTACCCGCCGATCGAACCCATATCTATCGGAAGCTACTTAGAAGACAACTTGATCATCTCCAGAATTCTGTATTTTATGGTGAACTGACTAAAGGGCAGGTGACGGCGCTGAAACAAGATCTCAAAAAGAAACTAGAGACTGATGATGAGGTGGTGGTTTTTGAATCCACGAATCCAGCTTCATTCGAATTCACGACGTACGGTGACGTCGACGATCCCGGTAGCCGTTTTACTTGAGGTTGTTCTTGACCTCTGGTAGAGGAGAATCTTGTTTCAATGGACCCCCTGGGGGAACCGTGGGGATTAGGGGTCGATGAAAAATACCATATCGAACCACGCTGTAGGGACACATTAGCCCCGCAAAACTGGGCGG # Right flank : AAAACATACTGCGGGGTTGAAGTCACAACTCCCGTGCTCAACTACAAGCTAGAGTTACAGCGATGATTTGACCGTTTCTACAGGCGGAGCAGGCCGAGTGCCTCGGGGCTTGACCCCGAGGCGGTTCACACACTGCCCCCGAAGTAAACACCCTACGCAGGCTTGACCGGCGCAACATACTGACTCTTGACCTTGTCACCCTCGCGCCATTGCAAGTAGTAGTACTCGCGATCGTCGATACTCTTCACTGTCAGCGCGCCCTTCGAGCGTTGTATTTCGGCCTGCTCGTAGGCGTTGGCTATCTTCTCGTCCCAGTCGTCCTCGTCGTCGGCCCATTCCCCGGGCGTGTCCACGCTGTTCTGGTCCTCGATCCCGCCGTCGCTCTCCAGCAGCACGGCCAGCTCGTCGACGGCGGCAATCGCGTCCTCGTGCGCATCACGACATTCCTGCTCCAGCGCCTCGACGTCGATTCGTTCCAGCGCCGACAGCGCTTGGTGAGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTGGGATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGATTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.20,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 90303-85293 **** Predicted by CRISPRDetect 2.4 *** >NZ_QPLQ01000008.1 Haloarcula sp. Atlit-47R P_contig000008, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================================= ================== 90302 37 100.0 35 ..................................... AGAACGCAAGCACTAACACTATCACTATTCAAACC 90230 37 100.0 35 ..................................... AGTTACCGCGGTGACCCTCGGCGACGAGCCACTAG 90158 37 100.0 34 ..................................... CGGTCGTGTCCTCGAGCCCGAGTCGCGTGCTGTT 90087 37 100.0 33 ..................................... CCGACGAACCCTCTGCCTCGACGGCCGCGTTGA 90017 37 100.0 39 ..................................... GAATCGATAGCGCGCAACAATCGCTAACTGAATTGGCTG 89941 37 100.0 37 ..................................... TACACGTTGTAGTGAAGCCCATCTGAATGACTGTTCC 89867 37 100.0 37 ..................................... CTGACGAAACACGGCACTGAGCACGACAACCGGATGC 89793 37 100.0 34 ..................................... AAAGAATGGGCCGAACTGACTGTCACGTCCAATG 89722 37 100.0 36 ..................................... ATGGGTTCGTGATGAAGATGAGTTCATTCGCCGGCG 89649 37 100.0 37 ..................................... ATCTCGACCGAGGTGAGGCCTGATGGCTCGTGTCAAG 89575 37 100.0 35 ..................................... TATACCTCATCCATCGTGACCACCGCCCGCGCTGT 89503 37 100.0 37 ..................................... GTGTCGGTCGCCCGCCGGTCGCCACACCGCCGATTTG 89429 37 100.0 34 ..................................... GAGGAGCTGCCCCACGCGACGGCCTGCCCACAGC 89358 37 100.0 37 ..................................... TCTGCGGTTGTCGGTGCTGTCCGGGAGTTTGCTGACC 89284 37 100.0 37 ..................................... ATGTCGTCCTCGGGCACCTTCAGTTTCCAGTGGCGGC 89210 37 100.0 35 ..................................... CGAGCGACTGCGGCGACAGGCCGGCGGCGCGTCGC 89138 37 100.0 35 ..................................... ACCTCGACGTACTACGCGCTCGACTCAGTGCACGC 89066 37 100.0 35 ..................................... TTCTCATACACCTCTTGAACGCCGGTCATTTCCGG 88994 37 100.0 36 ..................................... CGACACGCTCAAGCAGTTACTCGAGGTCGCGGAGAC 88921 37 100.0 35 ..................................... AGCCCTACATCCGGCGCGCGGGGTACGCGCGACTC 88849 37 100.0 37 ..................................... TCGACCGTTGGCTCGGGGACGTCGTCGACATCCGGGG 88775 37 100.0 34 ..................................... AGTATGCGCGTCCAGACACAACCACGGACCCAGA 88704 37 100.0 37 ..................................... TCGTAGGCCCCAATCTCTTCGTCGGGCGAGATGAGAC 88630 37 100.0 38 ..................................... AGGTGCAGTGCGTTGAGTGTGGCCGAACAGCGGGCTGC 88555 37 100.0 33 ..................................... TTGCATCCGTCGCTGGGATGGTTATTGTGCCCG 88485 37 100.0 36 ..................................... CCGTTTGACGCTGAGTTTGTCAACACAACACAGGGG 88412 37 100.0 36 ..................................... AGATAATGAAGATAGCCCCACGAGTGCAATGAGTTA 88339 37 100.0 35 ..................................... TCGAATAATCCACTGAGTCTATCATTTCAGGGTTT 88267 37 100.0 35 ..................................... ACCCCCGCCGGAACACCTGAACCGTGTTTGGACTG 88195 37 100.0 34 ..................................... ACGGAGAGAGAGTAATGCCGTCGCACAGAGCGAA 88124 37 100.0 37 ..................................... TTCATCCCGTTCCCCCGTATGGCGTTCCCTTTCAAAT 88050 37 100.0 36 ..................................... TCGAAGCATGAGTGAGCTTGACCCAGACATCAAGGT 87977 37 100.0 34 ..................................... ACCTCCGCATCATCGGCGATGCGGCGGCAGACCC 87906 37 100.0 35 ..................................... CAGTCAGTGTTGACGACGGTGCCGGAGATGGTGGG 87834 37 100.0 37 ..................................... AGGTTATCAAGACCGAATATGTCGCCACGGCGGCGGA 87760 37 100.0 37 ..................................... ACGTAGCCACTTTCGGCCAACATGCCCTCGACGACAG 87686 37 100.0 37 ..................................... TGTCCTTAGCACGCCGGCCGTTTTGGCCGGAAGACTC 87612 37 100.0 37 ..................................... TAGTGCTGTATCTGGTAGGTCGTTGGCGTGTCGAAGT 87538 37 100.0 36 ..................................... AGTTCGTCGAACGCATCGCCGCCGCGCTGCAGTTGG 87465 37 100.0 34 ..................................... AGGAAATCGCAGATGTTTGACTTTCCCACGCCAG 87394 37 100.0 36 ..................................... CGACGGACCTGCGGGCGACGGCCATCCCGAGCGAGC 87321 37 100.0 36 ..................................... GATGCGCTGGCCAACGTCCGGCTCCGGAACGGACAG 87248 37 100.0 36 ..................................... ACCCCCAATCCCCCAATGTCGACTTTTTATCACACT 87175 37 100.0 35 ..................................... CGCCCTCGTCGCCGGTGATGGTGTTGCCGCCGACG 87103 37 100.0 35 ..................................... ACGGCACGTATCTGCTTGGCTCCAGTGGCGACGAC 87031 37 100.0 36 ..................................... ACAACGTAGGTGTCGGCGTCGATGACGCTACGTTCG 86958 37 100.0 37 ..................................... ATGCCACGCGCGGCGTTGATGCCGCTGGCTGGGCTGC 86884 37 100.0 38 ..................................... AGTCTGGCCAACTGTCTGTATTCAGCGACGCCAATGGG 86809 37 100.0 35 ..................................... TCATCAGCCCGAAGGCCTCTGCGCTGACTCCGGTC 86737 37 100.0 36 ..................................... TCGCGGTCGAGGAGGCCGAGGACATCTTTCGCCTCG 86664 37 100.0 34 ..................................... AAGTCTATATCGACCGCGGCGGGCAGACCGAGCC 86593 37 100.0 35 ..................................... ACAGAATCAGCGCTGGCATGACCATGAGCGATTTC 86521 37 100.0 36 ..................................... GAACCCCGCTGGCTCAATCAATGCTGCGCGTGGTAT 86448 37 100.0 50 ..................................... AGACGACATTCTCTCCGCGCTCCCGCCGCTGCTGGCGGCGAGCACGTCGG 86361 37 100.0 33 ..................................... TAGCTCCATGTGATGACTTCCTGCCGGAGGTAG 86291 37 100.0 34 ..................................... CTGGCGCGGAGTTTATCAAAACCAACGCCGGAGG 86220 37 100.0 55 ..................................... TCATCTCCAGCGTTGTCTGTGGGACGCCAAGGATGGCGTTCTCGGCGACGGGGTC 86128 37 100.0 37 ..................................... GCGTTACCGTCGACCGCTCGGCCACGGCGCTGGATAT 86054 37 100.0 34 ..................................... CTGGATATCTCGTGGCAGTGGGACCACGAGGCGG 85983 37 100.0 32 ..................................... TCGTGGATGCACGCCTCGACACACTCCGGTAG 85914 37 100.0 39 ..................................... TGCAGGTCGGGCTTGAACTCGCCGAGCAGGAAGTAAAGG 85838 37 100.0 34 ..................................... ATGCCGTCGGTGACATCGGTGACGGTGACGGTGT 85767 37 100.0 38 ..................................... AGTGTTGCGCCGTGGCCGTCAGTAATTCGCTCGTCGGT 85692 37 100.0 36 ..................................... GATATCATCGGCGGGCTTGGGCGCGCCATCGCAGCT 85619 37 100.0 36 ..................................... GGCTTAACGCTGGCGAATACGCACAGGTACAGGACC 85546 37 100.0 35 ..................................... TCGAGGCGGCCCTGCGCAAGGCCGCCAGCGATGGG 85474 37 100.0 35 ..................................... ATGGTCACGATTATTGTCAGTGGGCCTGAGGCCAT 85402 37 100.0 36 ..................................... ACGGCGTCGCTGCAGACATCATCCAACAGTATCCGA 85329 36 78.4 0 ......G.-.CCC.................C..G..G | A [85311] ========== ====== ====== ====== ===================================== ======================================================= ================== 69 37 99.7 36 GTCGCGACGAGGGAGAAACCCAGCACGGGATTGAAAC # Left flank : CATACTTCGAGTACGAAGTAAGTCGACGGAAGGCAATCCATCAGCAATCGATTCTGCTTCGGAAAGCGATCACTGGCGAACTTGACGAGTATCACGCACTGGAGGTCTCACGGTGAGACTCGTCGTTACCTACGACGTGAGCGACGATGCGAATCGCCGGAGAGTGTATCGAACGCTGGAACGGTATGGGGCATGGCGGCAATATAGTGTCTTCGAGGTTGATGTCTCGAAATCAGAGCGGGTCGAACTGGAAGATGAACTCGAAGCTCGGATTGACGAGAGCGATGGCGACAGGGTTCGAATCTATCGGCAATGTGAATCCTGTCTCGACGATATCACCGACATTGGCTCCGATCAACCTGACGAACAGTCGAATGTGATCTGAGTCCGGTTTCGTAGACCTTTTTGAACCCTGTGTACAGCAGGGGTCCACGAAAATAGCACTGTAAAACACAGATAGAGCGCAAACTATAGGCCCTATGCAGCGTATATTACCCCCT # Right flank : TACTTACGTTAGGTGACAAAAAGGTAGTGCTTTCTACGGTCCCGTGAAAAGGTGCGTGGTTTATATATTCAGCCCCCACCGCAAAAAGTATGTCTAAAATCGGGATCTATGCCCGTGTCTCAACAACAGACCAAGACCCACAACGACAGCTTGACGAACTGCGTGCATTCGCTCAAGACACATACGATGGCCCAGAGATTCACGAGTATGCAGATATCATCAGCGGGACCGAGACTGATCGCGGAGACGAGTACCAACGACTCCGCGGAGATATCGAAGCCGGACATCTTGACACTATCGTCGTCCACGAACTCTCGCGACTGTCTCGACTCGGTGCCGGTGAAATCCATGAATTCCTCGAATTCTGTCTCAGTCACGAAACTGGCATTCAGGACTTAGAGGTTGGCCTCGAAATCAGCCTTGACGATGATCTTGTCGATAGAGCGGTGAGCCAGCTCATTGCCGGAGTGATGGGTGACCTCGCGCGTGTCGAGCACAAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGACGAGGGAGAAACCCAGCACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [3,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.70,-3.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 2 100914-101609 **** Predicted by CRISPRDetect 2.4 *** >NZ_QPLQ01000008.1 Haloarcula sp. Atlit-47R P_contig000008, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 100914 37 100.0 36 ..................................... TTCCAAGACGTTATCCCAGCATTAGTGCCTGCGGAA 100987 37 100.0 37 ..................................... GTTGACATCTTCTTGATCGATAAGATTCCCCGATGCC 101061 37 100.0 37 ..................................... ATGGCCTTCTCACCGACCACCGGCACGCGCGTTTCCT 101135 37 100.0 36 ..................................... AAGTAACAATCACAGTCGAAGGTCCCGAATCGCAGG 101208 37 100.0 35 ..................................... ACAAACTCGCCACGCAGAATAAGCAACGCCTCCAG 101280 37 100.0 36 ..................................... GTAGTGTTCCGCCGCTGTGGACAGGCCCGCCGCGAC 101353 37 100.0 38 ..................................... ACGAGTGGGTGCTGGACAACCAGCGTGGCCAGCTCAAA 101428 37 100.0 37 ..................................... TGGCCGAGGCCGCGCGACAGGTCAAAGACTGGGTGGA 101502 37 100.0 34 ..................................... TCAAGGTCGATGGCGCTGTCGTCCAGCGCCGACC 101573 37 97.3 0 ........................C............ | ========== ====== ====== ====== ===================================== ====================================== ================== 10 37 99.7 36 GTCGAGACCGGGAAGAAACCCAGAGCGGGATTGAAAC # Left flank : CTGCCGCCAAAGGTGAGACAGTGGCAAACTTCGGCGGTGGTCCTCGTGAAATCTTTCTGGCCTTTACCGTCGCCGCATTGGTTACTACCGACCACATCGACACTGTATTGCAGTTCACGGATATCGACGAGGAGGTACAGGAGCTCCACTTACCCGAGCTGATGACATCACTGCCATCAAAAACAGATCAGACCCTCCGGACGATTGCACGGTTGGATGGAGATACAACACTCCCAGCGGTTGCCGAACGGAGCGACCAGTCCCGAAGCACGGTGGGTCGGCATCTTGACGAGCTTGAAACGGCTGGGGCCGTCGAAACAGACAAGGACGGTAAGACCAGACACGTCGAGTTGACGCTCGGGGGCCGCTTGCAGCTGTTTCGCCGCCGGTGAGTCGTGGACCTTTTTGAATGCTGTGTATAGCTGGGGTCCACGAATTCCGCAGTCGCTCTCACAGGATATGCGTAAGCTATAGACCCTCTGGGGCCTATATTACCCCCT # Right flank : CAACACGGCATGGAGGGAGCAATTCGGGGAGAGGTGATAGAGAATCAGGGATTCCAAATCAAATGGCCCCCAATTCTTCAGCACTGGTCGTGATTATCCCTGTAATCCGTACTAGCCTCAGAGCATACGGGGACACACACCCCGGGTGTCGAGTGTAAATCAACAGGATGGTGGGTACCCGATCAGGACACTGTAGTACGCCTACTGTTGTTAGTTGCTGTTTTCGAGTAGTAGAGAGCCCTAAGATCTTCTTTCAGCTTTTCTTACTACTACTAGCTACATTCTTTTATATATTTTATTGTATCAGCAATAAATAACTCATAGAATGTGGTATGAGCGGGTATAAGTCAAGTATAGAAGCACTAGCAATACTATTTATAAGTTATTCTGGGACTCCAATGCATAGCTATCTCTGGACAACACATGAGTTGCATAGCAATCCCTACTGAGTCATCGATCTGTCCGCAGACAGTATGTATACTCGTGTTAACCGTATTTCT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGACCGGGAAGAAACCCAGAGCGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [13,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.80,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : NA //