Array 1 92360-92998 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGYB01000013.1 Escherichia coli strain TUM18748, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 92360 29 100.0 32 ............................. ATACGCCCCAACCAGAAATAAATTTAGGGGAT 92421 29 100.0 32 ............................. CAATATTCACAATGTGGGATATATCCGATCAC 92482 29 100.0 32 ............................. CGACCGCGTGGGCGTCTACGTGGGGGATTAGA 92543 29 100.0 32 ............................. TGGGTCATGCCGGTGATCGCCTGCCCGTCGTG 92604 29 100.0 32 ............................. GCGGCGCAGGGATTCGTACAGTCAAAAACGCC 92665 29 100.0 32 ............................. AGTTGGGGCGGCGCAATAACGAGACGATACGC 92726 29 100.0 32 ............................. GGGAGTGGCACTTCTGGGGTAGCGGCGGCCCT 92787 29 96.6 32 ................T............ TCAACGCGCTCAGACGTTGCGTGAGTGAACCA 92848 29 100.0 32 ............................. AAATATCCAGGGCTGGGCTGGAGGCAGACGGC 92909 29 100.0 32 ............................. CCCGGAATGCATTCTGAAGGTTTGCTGTATAT 92970 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.4 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAATTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGAATAAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACTGCCTCTATGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATGGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8964-10274 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGYB01000047.1 Escherichia coli strain TUM18748, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 8964 29 100.0 32 ............................. TTTCAGAAAAGTACGGCTCAATTGATCGCCCC 9025 29 100.0 32 ............................. CGCTGGTGGCGGAAAACAGCCAAAATAACGCA 9086 29 100.0 33 ............................. TGGATTAATCCGCGGCTGGCGATATCTCGCAGC 9148 29 100.0 32 ............................. CCCCTGTCGCCGTTGGCGGATTCTTTCCTGTA 9209 29 100.0 32 ............................. CGATAAACGCTCAATACCAGCCGGAATAATCG 9270 29 100.0 32 ............................. GCGGAATCTGCTGCGCACAAGTTACACGGCGC 9331 29 100.0 32 ............................. CCTTGATCGGATTCCAGAAACGAACCACTAAA 9392 29 100.0 32 ............................. TCGTTTAGTGTGGAATTTGGCGACGCGGAGCG 9453 29 100.0 32 ............................. TTTAGCTAATATTGGGCGGCTAACGTCATCAA 9514 29 100.0 32 ............................. GTTAAATATTGTTCACCATCATGGATCAGGAA 9575 29 100.0 32 ............................. CATGAACATGGACGATGAAAAAATAAGGGAGG 9636 29 100.0 32 ............................. CATGAACATGGACGATGAAAAAATAAGGGAGG 9697 29 100.0 32 ............................. AATTAAATGATTTTGATGCGCGCCGACTTGAA 9758 29 100.0 32 ............................. CCACGCGGCTGCATTCAGTGATATCCAGTTTG 9819 29 100.0 32 ............................. CATCTATTTATCTCGCCGCGATTGGCGATAAC 9880 29 100.0 32 ............................. CCGAACGGCTGGCGAAGCAGGTGGCTGGCGTA 9941 29 100.0 32 ............................. GTTTACCGCCCCGCAGAGGCGCTGGCAGATCC 10002 29 100.0 32 ............................. GGATGACCTGTCGCTAAAACTCGCCGCGTACA 10063 29 100.0 32 ............................. TCCGTTTGGTCCACCAAATGTTTGATGCTTCA 10124 29 100.0 32 ............................. TTCAGGGTGTGATTCCGCATACCAAGCAGTAA 10185 29 96.6 32 .A........................... GGCGCACTGGATGCGATGATGGATATCACTTA 10246 28 72.4 0 .AA........C..T....A..-.C...C | T [10265] ========== ====== ====== ====== ============================= ================================= ================== 22 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : CAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAATTAAGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTTTCGGTGTCACTCATCCGCT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //