Array 1 212672-210535 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOLF01000001.1 Haloferax sp. ATCC BAA-644 contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 212671 30 100.0 34 .............................. ATGTTGACTCCTTCCTTGAAGTCCTCGGGAACCG 212607 30 100.0 36 .............................. AATTTCGATGTCTTCTATGGCACTTGCCATACAAGT 212541 30 100.0 34 .............................. TACACACGACCATGTCACTAACCACAGAGCCGGA 212477 30 100.0 36 .............................. CCTGCCTGTTTGAACGGTCGGTGTAGCCCGTGTTGT 212411 30 100.0 37 .............................. AGTCGCGGGGTTCTGACCGATGATACTGCCGATGGCC 212344 30 100.0 34 .............................. GGCTACTCTGCCTCGCTCGGGTGTTCGAGCGAGT 212280 30 100.0 37 .............................. GGGAAGTGCCGTGAGGTAGAGTTGCGTAGTCATGGTC 212213 30 100.0 35 .............................. CACCACCTCGGGGTTATGGTCGGCAAGGACGAGTC 212148 30 100.0 37 .............................. TCGTCGTACTCACCGAGAACTCTGACGACCCGCCCGC 212081 30 100.0 36 .............................. GGCTACCATCGACAAGTTAGAGGAAGACCATGACTG 212015 30 100.0 36 .............................. GCCTATTTTTCGCCGCCGATTAGACATACTGGTCCA 211949 30 100.0 38 .............................. GCTCAGTACGGTGTGAGCACTTCCGAGAATCGACTACT 211881 30 100.0 35 .............................. GAAGTAACCTCTACTCCGCTGTTTCTACACCCCCA 211816 30 100.0 34 .............................. CGGTGGATGTACCTCCACGGCGGCCTGCTCTCGT 211752 30 100.0 35 .............................. GTCCCCATGAGGCCCTCCCCGGTCTCGCCTTGGTA 211687 30 100.0 37 .............................. ATGGCGTCCTCTCTCGCGTCGAGGAACACGAAAAGCA 211620 30 100.0 36 .............................. AACTTTGAGGGGGAATTCCCCGAAGACCCCGGAACC 211554 30 100.0 36 .............................. CCCGCGTCCAGCGTCTCCCCAATATTTGTAAACCGT 211488 30 100.0 35 .............................. TCCCCCCGACGAGACGCGGGCGCGAATGTCGTAGC 211423 30 100.0 37 .............................. AGCGCGGTTGCACTGTCCCTCTAACCACACGACACGG 211356 30 100.0 37 .............................. GACCGAACGGTCGTCCATGGTCGCGGTTGCTTTTACC 211289 30 100.0 35 .............................. ATTGTCAATCCGGATTGAGTCGTGTGCCGCAAGCG 211224 30 100.0 36 .............................. TCTGGGCCGTTGTTGCTGCATCGGAGTCGTTGACGT 211158 30 100.0 37 .............................. GGGAACATCGAAGAACCGGGCAGTCGGACGCTTCCCT 211091 30 100.0 38 .............................. TGCGACTGCACCGAAGACCCGTCGCGGGCAGTCATCTC 211023 30 100.0 37 .............................. GCGTGGGTCCGGAGAGTCGCCTCGCCGCGGCTCTCCA 210956 30 100.0 35 .............................. TGACACGCCTGTTGCGACCTGTGCGGACAGGTAGC 210891 30 100.0 35 .............................. CGCGCAACCCTCTCGCGGCTCGACTCGGACGACTC 210826 30 100.0 37 .............................. TCTCGTCGACGAGCTCTGTTTTTCCACCCTTCCACCA 210759 30 100.0 36 .............................. GACTCTAACCTCTGCGACGGCTTGTTTGAGGGCCTG 210693 30 96.7 35 ...........G.................. ATCAAGCGCCACATCGACCGGCAGGGGACAGACGT 210628 30 100.0 34 .............................. GAGTCTTTCGCTGTTTTCTTGGCTTCTTCATTGT 210564 30 80.0 0 ...........G...G...G..A..A..T. | ========== ====== ====== ====== ============================== ====================================== ================== 33 30 99.3 36 GTTTCAGACGAACCCTTGTTGGGTTGAAGC # Left flank : ACGCTTGAGCGTACCGTCGACCATCCGAAACTCAATCGCAAGGTGAGCTACCAGTACCTGATGCGACTCGAAGCGTACAAACTGAAGAAGCATCTGTTGGCCGGCGAAGAGTACGAACCCTTCGAACGGTGGTGGTAAGATGTACGTCGTGATGGTGTACGACCTCGAAGCCGAACGGACGCACAAAGCGCTCAAACTTGGGCGGCGCTATCTGACGCACGTTCAGAACTCCGTGCTCGAAGGCGAGATTTCAGAAGGTGACTTAGCGACGCTTCGAAACGAGGTCGAAGACCTGTTGAAGCCGGGTGAGTCAACGATCATCTACGAACTGTCCTCGGATACACTTCTCGACCGCTCGGTCTACGGCGATGACCCGACCGACGAGAAACGCTTCCTCTGACTTCCGTCGACCCCCCGGTCGACTCGGGTTACTGAAGGTCGACGGAACTTCTTTATCATAGTCTTCCTTCAGAGGGTCTGTGTCCGTGATATCGGGCATG # Right flank : GGAGAGTCATTAAGACGAAAGCGCGTGAAAGAAACAGACACGGGCGCTACGCCGCCTCGGCGTACATCGCCACCAACTCGTCCGCGTTCGACTGCCACGAGTAGCGCGCTTCGATGACCGCCCGGTTCGTCCGACCCATGCGGACGGCCTCCGTGGGGTCGGAGACGAGTCGGGCGAGCGCGCGAGCCAGTTCCTCGGCGTCGCCGGGCGTGACGAGAATCCCGCGGTCGTCGGTGATGACCTCGGGGATGCTCCCGACGGGCGTGGTCACGATGGCGTTGCCGCCGGCCATGCCTTCGAGCATGGCGATCGGAAGCCCCTCCGCGTAGGTCGGGAGGACGAACACGGTCCCGCGGCTGATGAGGTCGCGCTTGTCTTCCTCGGAGAGAAATCCGAGGTACGAGACGTTGTCGTGGGCGGCGGCGACCGCCTCGGCGCGGTCGGCGTGGGGGCCGCGGCCGCCGATGCTCACTTCGAAGTCGAGGCCGGGCGTGGATTCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTTGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.50,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 223587-222210 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOLF01000001.1 Haloferax sp. ATCC BAA-644 contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 223586 30 100.0 35 .............................. GAGGAGCTTGTCCTTGATGTAGAGTCCCGCGCCGG 223521 30 100.0 37 .............................. GACGCGTGCGTGGCCGATGTCGAAGACTGGGACAATA 223454 30 100.0 35 .............................. CGCTTTGAAAATAGCTACCGGCGGCCACCACGCGC 223389 30 100.0 1 .............................. N Deletion [223359] 223358 30 100.0 35 .............................. CGCTTTGAAAATAGCTACCGGCGGCCACCACGCGC 223293 30 100.0 35 .............................. TTCGGCATTAGTCGCCGCCCCCACAGTCAACGTCA 223228 30 100.0 35 .............................. GCCGTACTTTGCCGCCTCGGCCGACAGCGTCACCA 223163 30 100.0 35 .............................. ATTCGGGATGGAACTGGACACCTCGGGGCTTTCAC 223098 30 100.0 34 .............................. TCTGTGCCGAGAGCAGTATTTACATTCCGAGAGT 223034 30 100.0 34 .............................. CTGCAGCTCGTTGAACAGTTCTATACGGCCGCCC 222970 30 100.0 37 .............................. GATCGCGGCAACACGCCAATCGGGAACTACCTCGACA 222903 30 100.0 36 .............................. TATTTCTTCGCCGTACTGTTCATCTTCCTCGCGGGT 222837 30 100.0 38 .............................. TTTTTTACTGCATCAGAACCGTAGGTCGGGTGAACGTT 222769 30 100.0 38 .............................. GGACAGCCCATGCGCCCACACCCAGCCGGGCGGTCCGA 222701 30 100.0 36 .............................. GGCTTCGTCAAGAGACGGAACACGATGTTGACGCGT 222635 30 100.0 35 .............................. CACGGCGGCCGTCTCGGTCACGTACAATAGTCAAT 222570 30 100.0 36 .............................. GACTCGGCAGAGGAGGCGTTCGAGCGCGAGGCTGGC 222504 30 100.0 36 .............................. AGCTTGACGCGGACGCCGACCTGGTAGTCGTCGCCC 222438 30 100.0 36 .............................. GGCCATGTGTCGGTGTCCGGGTCGTACTGCCGGAGT 222372 30 100.0 38 .............................. AGCGTCGAGTTGGCGGCCGAGATGACCGCGGTGCCGGC 222304 30 100.0 35 .............................. ACGAGCTCGAAGACGAGCAGTCAGCCCCGGACACC 222239 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 22 30 100.0 34 GTTTCAGACGAACCCTTGTGGGATTGAAGC # Left flank : TCGTCGTCGGCACCTCCGTCGACCGCATCCGCGAGCGCCTCGTCGGTGACGTCCACACCTACGGCGGCCGCTCCACCATCGGCGACTGGTACCGGACGAACCGCGCGCTCCGCGAGCGCATCGACGACCTACTCGACTCCGCGTGCGAGCGTCCGTACTTCGACGCCGCCGAAATTCGTCGCCTCCAACGCGAGGAACGCACGGGCGAAGCCGAACACATGAGCGCCATCTCCGGCATCATCACCGGCGAACTCTGGGTCCGCAAGTATATCGACCGCGAAGATCGCGGCGTCGAGGAGGGTTCCGTCGGTGCGGCGGAAGCCGAAGACGCGCCGCAACCGGCCGACTGAGTTACTCGAACCACTCGATGGACTGTCCAGTCGTGTGGAACTGAGATTCGTTTCCGTCGACCCCCGGGGGAGCGAGGACTACTGAGGGTCGACGGAAACGTTCTTTTGAATTCGGTTCGTACGCGACGTTACGCCCGTGATTTCGGGACG # Right flank : AGAGAAAACCATCCAACGAAAACAATCACCCGAACAGTCAATTCTAATTTCAATTATTGCGGACCCGTCAAATGACGGGAATAACTTTATGTCGAGTAGCCAACAACCGTGGAGACAGCAATGAGTACACAAGGAGGCGTCGGGTAACGGTGCGGATTATGGCTCACTTATCAGCGCGTTCCGACGCCGCGTATCAGAACGATTACCATCACAAGATTCGCGGGCGAATCTGGAACGCGCTCGACGGGACGGTCTACGGAGAACGACACGATTCCGGCGAGCCGCCGGGATTCGCCTACTCGAATCCGTTTCCGCCTCGAAATATGCGGGAAGGTGACGACCGGAAGTTGCTGGTCGCGTCTCCCGACGAGGAACTACTCGCGAACGTGGCGGCGAATCTGCTCGACGACCGAGAGTTCAACGTCGGTGAGATGCCGTTTCACGTCGACGAGGTAACATCCCTCGAACCCGACGTGGGCGAGCCAGGGACCAGGGGGACG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.13, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTGGGATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGATTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.20,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.87 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 224538-221756 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOLF01000022.1 Haloferax sp. ATCC BAA-644 contig_22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================================== ================== 224537 30 100.0 37 .............................. AGGTACTGGAGGTAGGTCGACTCGACTCTAGGCACGA 224470 30 100.0 36 .............................. TCGTACTCGCTCTCGGCCGTCACAGTCCCTCTCTGC 224404 30 100.0 36 .............................. CACTCCTTTAGGTGGCGGGCGGCGCGTTGGACACCC 224338 30 100.0 35 .............................. ATTTGACATTGGTGTGTTGCCCCACATATGGGAGA 224273 30 100.0 38 .............................. TTCTCGTAGCTGATGGTGATGCCGTTCGAGTCGTCGCA 224205 30 100.0 37 .............................. GGTCTCCTAAGCCAAGCCAACAGCCGCGCCCTCGAAG 224138 30 100.0 34 .............................. CGCCCCGTCGATGGACAGGAACCACTTGATGAAC 224074 30 100.0 35 .............................. GACTTCGGTCCTCACGTCCGTCGAATACCCCGCCA 224009 30 100.0 35 .............................. CCTAACGACACGGATTACGGGGTCTTCGGTACAGA 223944 30 100.0 36 .............................. GAGTCTGGGACTATCACGTCGGCCATTGGCCCGGGT 223878 30 100.0 35 .............................. ATCGCGTGTACGCCCGGCGGGCGCGCCGCTCGCGG 223813 30 100.0 37 .............................. GTCTACAGCGGCGTTGGTGCCATTGGGCTACTCGGTG 223746 30 100.0 36 .............................. AAAAACGGTTACTCGCCCGAAGGGGCCGAGGCAGTC 223680 30 100.0 33 .............................. CGCGCTCGTAGTCGGAGTCGGGGTCGCGGACGA 223617 30 100.0 36 .............................. CGACGCCGTTGCCGCCCATCGCAACGACGAACTGGT 223551 30 100.0 38 .............................. CGAATCGGTGTTACTCATGCACTCTCACCTGCCCGGAA 223483 30 100.0 38 .............................. GGTCAGGGGGGCGACACTCCGGTTGCCAAATTCACCGT 223415 30 100.0 37 .............................. GCACACTGCGTTAGTGCCGCACCACGTTGATAGACTG 223348 30 100.0 38 .............................. ATATTCGGTACTCTGTGGGCTATCACGTTCAATCTCGT 223280 30 100.0 36 .............................. TCTCTTAGTTCGTCTCTGGACTCCTTCGAGAGTCGG 223214 30 100.0 35 .............................. TGGTGGTTCTTCGGTTAGTCGGTGGTTTGGCGTGT 223149 30 100.0 38 .............................. AGAATAGTCGGTATTAGAGATGGACGAACGAATCCCAC 223081 30 100.0 37 .............................. AGGGTGCAGGTCGCGGACATCGAGCGCCCGAAGCGCC 223014 30 100.0 38 .............................. GCCTCCAGGAGCGCGCGGTGCTCGTCGCTCGCGTTGTC 222946 30 100.0 34 .............................. CGGTTCGACGACGACGCGAGCTTCGCAAACGCCC 222882 30 100.0 35 .............................. GAACTGCGCGCCGGGGACGATGGTGTCGAAGTGGT 222817 30 90.0 54 ........................N..C.A ACCCTTGTGGGATTGAAGCGAACTGCGCGCCGGGGACGATGGTGTCGAAGTGGT 222733 30 100.0 37 .............................. AGCCAGTGGCTCTCGGAGACGGGCACCGAACGCGTGC 222666 30 100.0 36 .............................. AATGGCTCTCGTTCTCCCCGCGTTAGGACTCACGTC 222600 30 100.0 37 .............................. GGCTTCCCACGGCGTCTGGTTGAGCCGCTCCAAGAGC 222533 30 100.0 30 .............................. TGCCGACCGCCCGGACGAGAGGCCACGTAC 222467 30 83.3 7 .....................NG..C.GA. GAACCCT TGC [222442] Deletion [222431] 222443 30 100.0 36 .............................. CAAGGATGCCGACCGCCCGGACGAGAGGCCACGTAC 222377 30 100.0 35 .............................. CGCTTTACCGCCGACTGCGACAGCGACGCGCCCCG 222312 30 100.0 37 .............................. GTTCCCGCCGCGCTTCAGGAACCACCGGAGCGAATCG 222245 30 100.0 36 .............................. ACCTCCCGCGAGCGCCACTCTGCGACCCCGTGAATC 222179 30 100.0 36 .............................. GAGACTTGTCCGCCGTCGGCGAGCAGGTAGCGGACA 222113 30 100.0 36 .............................. CAGCTAAAACAAATCCGCACGTCGCGCCAAAACCGC 222047 30 100.0 35 .............................. GTGGACTACGGCGACTTGTTCACCTACGACCGCGA 221982 30 100.0 34 .............................. TACAACTTCGCGGCACGTCCGGGGTCGAACGGTG 221918 30 100.0 37 .............................. CGCGAGCGGGAGCGCAGCCGCGACTACGTGGCCGACC 221851 30 100.0 36 .............................. GACACGGAGCTCCGCCGACACCTAACGGAGCCGCCC 221785 30 80.0 0 ...............G.A.C.A.G.....A | ========== ====== ====== ====== ============================== ====================================================== ================== 43 30 98.9 36 GTTTCAGACGAACCCTTGTGGGATTGAAGC # Left flank : CTCGTCGGTGAGTCGCTCACCGACTTCCGAGGCGTCGTCTACGCGCCCTCCATCATCGACAACTTCGAGGCGCTCCGCGCCGGCGAGCGCTCGTTCGACGAGATTGCCGCGCCGACGATGACGCTCGCCGCCGACACGAACGTCAGCGACGCGTTCGACCAGTTCCAAGCCGAGGACCAGGAACTCGCGCTCGTCCTGCGGGACGGCGAGGTCGTCGGCCTCCTCACCGCGACCGACGCCCTCGAAGCGGTCATGGGCGAACTCGACGACCCGCTCGACTAGCGCTCTCGACGCTCCCCCTCGAATTTTTTCGGCGTGCGGCCGCGCCCCGCGGACGAGCCGACCGCGTGACGACTGCCCGAGAGAGTGGTTCTCGACAGTGCCAGTGACGAACCGACGTTTTCGTCGACCCCCCGGGGGTTGCGGGTGAATTGAGGGTCGACGGAAACACTCTTTTGAATTCGGGTGATACACGTCATTGTACCCGTGAATTCGGGATG # Right flank : ATCAGGCGACGGCATTGCGATGCACGTATTAGTCAATCACGTACTGAAATCGAAGAATGCCCGGGGTGGGCTCCGAACCCACGATCTCCGCATGTCCCAGGTGCGAGGCCGGCATGACCTCGCGGGGGGCGGAGGCTTCCAAGGCGTTCCGCACCGATTGTGAAACCCTATGAGTGCGGCGCTATGTCCAGCTAAGCCACCCGGGCTCAACTTCCCGTTGTGTACTGGTTGTATTTAAGCTTCTCATCTCCGACGACCGCGGGACGAGTCACCACGGCACTCGATTCGAGTCATCACCCGCGGATTTATGTCCCAACACCGGGTGCACACACGCATGAGCCAACCGGAGATCGTCCAGTCCGTCCTCGGAGAGGAAGACGTGGTGACCCGCGTCCACCTCGGGGGCGAGGACGAACTGTTTGTAACTCCGACGCGGACGCTCGTCTATCGGGCCGAAGGCCTCCTCTCGGACGAGTCCGTCGACGAGTTCTCGCACGCTG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTGGGATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGATTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.20,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 11259-8734 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOLF01000033.1 Haloferax sp. ATCC BAA-644 contig_33, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================================ ================== 11258 30 100.0 34 .............................. CCGATGCGGTCGCGTTGGGTGTTCGTCGTGCCGG 11194 30 100.0 38 .............................. CATCGGTTGAAGGGTAGCCCGCATCCTCGCCCCGCACC 11126 30 100.0 38 .............................. GAGCACAGACACCCCCACCGACGGCAACGGCGGCAACG 11058 30 100.0 37 .............................. TGGTCGGCCTCGGTGAAGATCGCGTCCGTCGAGAACG 10991 30 100.0 37 .............................. GTCTTCGCGTTCCTGCTGGTCGCGACCGCGGCCACCA 10924 30 100.0 35 .............................. ATGCTGGTGTCGGCTTCCATGCGCTGACCGCGGAG 10859 30 100.0 36 .............................. GGCAGTTCTGCAAAGTCTGTCCGATATCGTCAACCC 10793 30 100.0 34 .............................. CTCCGCCTGCGGGTGACGGAGGCCGCGTCTGCCG 10729 30 100.0 32 .............................. GAGGTCAAACACGACGCGACCATCGAACAAGT 10667 30 100.0 35 .............................. ATTTCGGAGCACCCGCATCGCAGTCTCGCCGTCCT 10602 30 100.0 36 .............................. GCGTTGGTTAAGACCGCGAGGGCGGTCGAGAGTGTT 10536 30 100.0 37 .............................. GGGCCAGAAGACCCCGACGTGTTGGCGCACGCCAGGG 10469 30 100.0 37 .............................. AGCACCTCGAGGGAGAGGAGGCCGAGGCCTCCAGAGA 10402 30 100.0 32 .............................. GTCCGTACTAACCGGGTCGATATCGCCGGATT 10340 30 100.0 36 .............................. GAAGAGCGCCTCGAATCCGCGTCGAACGCGGGGAGC 10274 30 100.0 35 .............................. CTCTGCGGACTCGACAAGGTCGTCAATCGGGACAT 10209 30 100.0 37 .............................. CGAACCGGGCCGGACGCGCCGGCCAACACGAGAGCGC 10142 30 100.0 38 .............................. GTCGTACATGGCCTCGAAGAAGTCGAAAGGGAACGTCG 10074 30 100.0 60 .............................. NGCACCCTTGTGGGGTTGAAGCGTCGTACATGGCCTCGAAGAAGTCGAAAGGGAACGTCG 9984 30 100.0 37 .............................. TTTACTCATTTAGAATGCACCCGAGTTGTAAAGGCCG 9917 30 100.0 36 .............................. GCATCCTGATTCGAGGAGTTGCGCCTCGCTCGCGAC 9850 30 90.0 4 .........................TC..A CGCA CN [9828] Deletion [9817] 9826 30 100.0 37 .............................. GGCATCCTGATTCGAGGAGTTGCGCCTCGCTCGCGAC 9759 30 100.0 38 .............................. GGTTTGCGAGACTACGGTGAAGACGACCAAATCGGCCT 9691 30 100.0 35 .............................. GACCCGGACATCGTGGCCGATGTGTTTGACCTCCG 9626 30 100.0 35 .............................. GACGACCCCGAATGGGACGGGAGCGCGGCAACGTC 9561 30 100.0 35 .............................. TTCGTCTCGGAGCCCGTCGAGGAAGGCGAGCGCGT 9496 30 100.0 36 .............................. CATCTCGCACAACGGCAATGCAGTCTCTGTTGAGGG 9430 30 100.0 35 .............................. GTCTGGCAAGTCGCCGTATGACACCATCCAGTCGC 9365 30 100.0 38 .............................. CGCTGAGAACGTCAATCTCTCACAGGGTTGGGCTAAAC 9297 30 100.0 37 .............................. ATGGGGGCGATATCATCCATGTACTCTCCCGGTCCTG 9230 30 100.0 37 .............................. ATTGTCCCAGAACCCACCCACCGTTTTTAGCAGAGTG 9163 30 100.0 37 .............................. ATCCGTGGTTCACCATATTGGCAATACGTGACTGTGG 9096 30 100.0 37 .............................. TGAAAAAGAACACCCCCTACTCGGCGTTTTTAAACAA 9029 30 100.0 37 .............................. GTGATGAAGATGAGCTCGTTCGCCGGCGCGTTGTCGA 8962 30 100.0 37 .............................. AACCCAAAGCACGACGACGGCGTTGTCGGGTCGACTG 8895 30 100.0 36 .............................. GGGAATGACACCGAGACGATCATCGCACTCCCGGCA 8829 30 100.0 36 .............................. GTGACCGGCCTCACCCGCGGCGCGCTTCTCGGAGGG 8763 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ============================================================ ================== 39 30 99.7 36 GTTTCAGACGCACCCTTGTGGGGTTGAAGC # Left flank : AGACGCACCCTTGTGGGGTTGAAGCCGTCCTGCTTTTCGCCCTCCTCACGGGATGTCG # Right flank : CGCTGGCGGCTCAGTGCCGGCTGTCTCGAAGTCGACGGTTTCAGCAGAACCCTTGTGAGAGTGAAGCCTAATAGNCCCTTGTGGGGTTGAAGCCGCTGGCGGCTCAGTGCCGGCTGTCTCGAAGTCGACGGTTTCAGCAGAACCCTTGTGAGAGTGAAGCCTAATAGTGGGGCTCACAGGATGGGCGACTGCTGTGTTTCAATGACCAAACGAGAACCACGAGACGGCGGCGGGAAGACTTTTGCAACGAGCGGGAAACGTCTCGACTGAGATGTCAATCCAGCCGCTCGATGTCCTCGGCGGGGTCATGTTCCTCGCCGGCCTCGCGGTCGTGACCGGCGTGGTCGCGTCCGCGGTCGCCGCGGGTCAGCGCCTCGGCGTCGGTGCTCTGCTCATGGTGCTCGGAACGGCCGCCGTCGCCGGGTCGCGCATGTATCAAAAAGCCCTCGAAGCGACGAACTAACCGGCATCACACCCCGTCAGACCCGTTTTTCTGGCCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGCACCCTTGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [38.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 2008-61 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOLF01000034.1 Haloferax sp. ATCC BAA-644 contig_34, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================================================================== ================== 2007 30 100.0 37 .............................. GGACCACAGTCGTTCGATACGGTCGTGTTCGACCCAC 1940 30 100.0 37 .............................. CGGTGGACGACTGTCTGGCCGGGTTCGAGCGCCTCGA 1873 30 100.0 36 .............................. GACTTGTCCGAACGGCATCGTCCCGAGGCAATGCTC 1807 30 100.0 37 .............................. GGACAGTCGCGCTTTGTGCGGCCTCTTCGCGCTCGTA 1740 30 100.0 38 .............................. AACGTCAGCATACCCGTCCCCTGACCTTTGATTATATC 1672 30 100.0 35 .............................. TTGCGGTCCCAGTTCTTCAGTCATGGTCTTCCTCT 1607 30 100.0 35 .............................. TGGATATGTTCGAGGGCAAATCCCCACGTTCGGGC 1542 30 100.0 35 .............................. ACTGTCCCCACTTACCAGAGAGAACCCGAGAGATC 1477 30 100.0 36 .............................. CCCATCTCGTGACCCGAGTCGTCCCACCCGCCGAAC 1411 30 100.0 37 .............................. CATCACCTCGGGGTTATGGTCGGCAAGGACGAGTCGG 1344 30 100.0 60 .............................. GATGACNCTTGTGGGGTTGAAGCCATCACCTCGGGGTTATGGTCGGCAAGGACGAGTCGG 1254 30 100.0 35 .............................. GATGACTACTGCCTCGCTCATCTCCCCGGACCCCG 1189 30 100.0 37 .............................. TCGAAGGTGCGGGATTCGGCGGCGGCGAAAAGACACT 1122 30 100.0 35 .............................. CAGCCAGTCGTCGTCTGCGTTTTCGGTGTGCTTGA 1057 30 100.0 38 .............................. GTCCTGCTCGACGAGAACGGGTCGCCGGTCGACCACCG 989 30 100.0 88 .............................. AAGGACCACGTCGGATGGGTCGGTGACACGCCCGTTTCAGACGCNGAAGCGTCCTGCTCGACGAGAACGGGTCGCCGGTCGACCACCG 871 30 100.0 33 .............................. AAGGACCACGTCGGATGGGTCGGTGACACGCCC 808 30 100.0 33 .............................. TCGTGCCACGTAAGCGTCATCGTCGCACCTCGG 745 30 100.0 36 .............................. GACGAACGTGTCAAGCACGCAGTTCAAGAACGAATC 679 30 100.0 36 .............................. AACCTCTTGGACCTCACAGAGGGGACCGCAACGATT 613 30 100.0 35 .............................. AGTCCCCGATAGTGACCCGGCAAACCCACCGGAAT 548 30 100.0 37 .............................. CTTCTTTCTTGAGACCGAAAATAGCGGTCTGACGGCG 481 30 100.0 35 .............................. GGCCGTTTCGTCTCCAGCGTCGAGGTCGGACAGTA 416 30 100.0 38 .............................. TCCGTCCAACAGTACCCGCTCGGCGTCGTGTAAGAACC 348 30 100.0 33 .............................. GTTAGTGTTGGCCCCCGACCGGACGAAAGGCGG 285 30 100.0 35 .............................. GATGACGATGTCGACCGATCCAGAGGTCTCGAACT 220 30 100.0 35 .............................. ACGGGGAGGAACCCGACTCTTCGGGCCACAACCCA 155 30 100.0 35 .............................. CCCAGATCGTTGAGACAGAGAACGCGAGAGTGCCA 90 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================================================================== ================== 29 30 100.0 38 GTTTCAGACGCACCCTTGTGGGGTTGAAGC # Left flank : ACTGCCTTCGACCGTGCACAGGGTAAGAAGCTCAGGAACGAGTCGGTCGTCAGTCAGGACTACCCAACACAGGACGTGTTCGTCTTGGTCTCCGGAAACGACATGGAGGCACACGACGCGTACGCGCGTCACCGGAAAGACGAGAAGTGGTCAAGCGCTCGGTCGGCGTTCCACTCGCTCAAGCCGACTCTCGTTTCCGTCCCCGTGGACGAAGAGTCGGACGAGAAAACTCCTCTCGTGATTCGCGTTGACGAGGATAGCCAAGACTACGATCTCGAAACCGGAGGGGGTGTGGACCTCAGCGGTCGAATCGACGCGTTGGAGAAGTGACCTGCAAGCATCCTTCTTTGCCGTGATGATTGCGATAGCAGTACCGACAGAATGGACATCGGTCGTCCTTCTGATGTCGACCCCGGGGGGTTTGGAGGGTATTGAAGGTCGACGGAAACTTTGAGGTGTAGATGGTGTGTATGGGTACTCACGTGGCCGAATCGGCCATG # Right flank : CGACCAGGAGTGGCTTGAGGAGGCCGACGACGACCACCGTTTCAGACGCACCCTTGTGGGG # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.18, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGCACCCTTGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [35.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //