Array 1 708-22 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAPE01000003.1 Helicobacter pullorum strain NAP2W5 contig003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 707 36 100.0 37 .................................... ATAGTCTCTCATGAAGTGAGTATCCTCGTCATCTTCA 634 36 100.0 35 .................................... ATCAAAATAATTATTCAACATGAACTGACTAAGAG 563 36 100.0 37 .................................... TTAAGATATAGTCTAACACTTCAGGAAATACTACTTC 490 36 100.0 34 .................................... TTCAACTGCTTACGCATTTCAATTGCGGTATCCT 420 36 100.0 41 .................................... CACGTGAGTAGCATGACAAACTAAACCATTGCCGAAGAGCA 343 36 100.0 35 .................................... CTAGGCATTTGCCCTCTTTGCACTTTAGCAATACC 272 36 100.0 33 .................................... ATTCTGAGCGACAAAGATGGAATAGTTTTTCTA 203 36 100.0 41 .................................... CTTGCTTTGGTGTTTTGTGCTTTGATTGCTTTGAAGGTTTG 126 36 97.2 33 ......................G............. TAACTGATCCATACCATTCATAGATACACTATC 57 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 10 36 99.7 36 ATTTAACAACACGACCCGATTCAAGGGGATTAAGAC # Left flank : AGTCTATGAATGCCAACTGACCAAAAAAGCACTCAAAGAAATAAAAACCAATCTCAAAAAAATACTCAATCGCAAAACCGATTCAATCCGCCTTTATCGAATCTGCAAAAACTGCAACAACAAAAGCAAGAGCATAGGCAAAGGAAAAGAACCATTTGCTCCCATAGATTTGAACTTCTAGCGCTCAAAAGAGATTTGCGAAGTTTTCATTTTTTTAAGCCCTACAACACCAATAAATACGCACCCCAAATAACTTAAAATTAGCTAAAATTTAGCAAATCATACTTTTTTTGCATTTTTAGCAAACCAATTTTTTATCCAAACCACACAATTATCGAGATTAGCAAGCATCCAACTTCCACAATTTTTACCCAAAATTTGACATTTGCGAAGTTTTTACAAAAAATCTCCCACAAAGCCAAAAAATATGGGATTAAATAAAGATTTAAGTTTGCTTAATATAAAATCTCAAAATCAAACGAGCCTCGTTGTCTCCAGCT # Right flank : CCAAAGTAATACCCCTTTGAAT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAACAACACGACCCGATTCAAGGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.00,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 52-1594 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAPE01000105.1 Helicobacter pullorum strain NAP2W5 contig105, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 52 36 97.2 33 ......................G............. TAACTGATCCATACCATTCATAGATACACTATC 121 36 100.0 36 .................................... CAAAGTAATACCCCTTTGAATATCAGCATTGTTTTT 193 36 100.0 35 .................................... TCTTTGGCTCTTCCTCTTTTGCCTTTAACTCTGCC 264 36 97.2 41 ......................G............. CACAATACTGACGCAAGAAGTCAGTATCGTTTTCATTTTTG 341 36 97.2 35 ......................G............. CTTTCAAAAATTTTAAATTCTGTTTTCACTTTCAC 412 36 100.0 36 .................................... CTAACTTAGGGGATTTGCAGTTTCTACACTGCTAGG 484 36 97.2 35 .....................T.............. TATCCCTTAATGTTAAATCCTGTTGCCATGTTATG 555 36 100.0 37 .................................... CCTCTACGTTTTCTACTTTTACATATTCTTTGTTCAT 628 36 100.0 34 .................................... TTGTTAGACTCAGCCTCTTCCTTCATTGCGTTCA 698 36 100.0 37 .................................... CCTGTTATATAGTTAGCACCTGTGATGGTAATTGTTC 771 36 97.2 36 ...................................A CAAGGCAAAGCTCTATTACTTCAGAATCTTGATTGT 843 36 100.0 39 .................................... CTAAAAGAGGCTCACAGCTTACAAAGATTGTAATATCCA 918 36 97.2 36 ......................G............. ATAACCCCTAGATATAACAACAACCCGATAGTTGCA 990 36 97.2 39 .....................T.............. AATCGATAAACTTCTCCTAAAGAATAGAACTCAGAATCT 1065 36 97.2 32 ......................G............. TTCTCTATAATGTGTAATTCCAGAGGTCTTGC 1133 36 100.0 37 .................................... GCTTAAGCCATCTAAAATTGAATCTACTGTATTGTTT 1206 36 97.2 36 ......................G............. AAGAAACCATCGACGACTCTGTCCCATTTTATTATG 1278 36 97.2 37 ......................G............. TTCTAACACTTCTTCCATATATTTTAGAGTTCTTTCT 1351 36 97.2 32 ......................G............. CAAGTTCCAAAAGTTCTAAAAAATGAAAGTAA 1419 36 94.4 34 .........T...........T.............. CGCTAACACGTCCGCAGTATTGTCTAAGGAAGTC 1489 36 100.0 34 .................................... AATTTAAAGAAATGTTTATAAGTTAAAGTAGTAG 1559 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 22 36 98.3 36 ATTTAACAACACGACCCGATTCAAGGGGATTAAGAC # Left flank : GGATTAAGACCTTGCTTTGGTGTTTTGTGCTTTGATTGCTTTGAAGGTTTGA # Right flank : ATTTGTAC # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAACAACACGACCCGATTCAAGGGGATTAAGAC # Alternate repeat : ATTTAACAACACGACCCGATTCGAGGGGATTAAGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.60,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-10.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 88516-89877 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAPE01000010.1 Helicobacter pullorum strain NAP2W5 contig010, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 88516 36 91.7 30 ....A....GG......................... CTATTCAATGCTTAATGATAATGACAATAT G,CT,TA [88520,88524,88531] 88587 36 100.0 30 .................................... ATTGAAATTCAAAACAAAACCAACAAAATC 88653 36 100.0 30 .................................... GCAGGAATAGTAGAATTAGAAACATAATAA 88719 36 100.0 30 .................................... ATAATAACTATTTAAATTTAAAGGGGCAGA 88785 36 100.0 30 .................................... AGAACGCTTCAAAAATTCCCGCTCAATGCC 88851 36 100.0 30 .................................... ACAGCGTCCTATTAGATTCAAGAGTCCAGA 88917 36 100.0 30 .................................... TGGGTCTAATCGAATATAACCACCTGAATT 88983 36 100.0 30 .................................... AGAGTAATGCTATTTTGGCAGAATGTATAA 89049 36 100.0 30 .................................... GACCAAGATATCGCTTGTGTTTGCCTATTT 89115 36 100.0 30 .................................... AGAAGTAGGATAATTCGACCACCAAGCAGA 89181 36 100.0 30 .................................... TGCCTCTTGAAAGAATTACAAAAACTAACA 89247 36 100.0 30 .................................... GTAAAAGAAAAAGATACTGGAGCTTCAGAA 89313 36 100.0 30 .................................... TATACACAAGCGAGGGAATTATAAATGTTT 89379 36 100.0 30 .................................... AAGTTTAAAGTTGAAAGTCAAGAATTAGAT 89445 36 100.0 30 .................................... TTGCAAGGCAAAATAAGCAAAAGGAAAGTG 89511 36 100.0 30 .................................... ATCGCAGAAACTTTTATACCAGCTTGTTTA 89577 36 100.0 30 .................................... GATAACAAAATGCAAAAGAATGTAATTTAC 89643 36 100.0 30 .................................... GAAATTTCCAAGAAATGCAACAAGCTCCGA 89709 36 100.0 30 .................................... TGGGTCTAATCGAATATAACCACCTGACTT 89775 36 100.0 31 .................................... CTCATAATCATCTCTAGAAATAACACCACTA 89842 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 21 36 99.6 30 GTTTTAGTCCCTTTTTAAATCTTTCTATGCTAAAAT # Left flank : TTTGTAGCAAATACACTTCCATTAGGTGCCAAGTCTAATTCAAAAGTATGAGGCTGTTCTCCATTAAAATACCTGTCTAACCATATTTTAGTTTGCAATAAGATAGGTTCATCGTCTTTTTCTTGTGTAGATTCCTTAAGATTTCCCAAATAATATTTCTGCCCTTCTATCCAAGAACCTATAAGTTTATTATCTTTGCTTGCTAAAAGTATCGTACCAATAGGACTTTGGTAAAAAGTAGTATATACCATGATTTTTCCCTCAAATCTTAAAAAATATGTTTGAATCTTGCAGTGTGTTATACTCGCTTTTTTAGTCTAAATTACGAAAAACCCCAAAAAATAAGACAATCTAAAACTCTATTAATTTTTCACCACACATTAGCTTATCGTACAAATCCAAAATATAAATATAGCAAACCTATCTTATAGCAATCAAAAATTACATCATTTAAAATATTTCAAAAAAACCTAAATTATATCAAAAATAATAAAATAATG # Right flank : TAGACCAAAAAATTGGGATTTTATGCTACAATAGCAAAAGAAGATTTAAAAAGGGACTAAAATAAACCTACCTAGTATTTCTTGGCAGTACTAGGAGTAAAGGTGCAGGGTGTGAGATTAAAAACCTCCAAAAATCCCTTTTTGCCAAGACTTTTTTACTTTATATTACATAATACTTTTCACATTTTATTGTTTTTTATATTCCCTATATTGTTACTATTCTACACATATTATCCTAAGTAGCACACCATTCTATCTTCAAAACTCAAATAAACTTCCTTGTATATTTCTTGTTTTCTTTGATTTTGTTTGCAACAACTTCTCTTCATCGCTATCTTTATCATTATCCGCATACACATACTCTCCCTTTTTCTCATCAAACCCAAAAAGTACGAGATTTCTTGGCTCATTCATCATCTCATTGAATCCCACCCCACCTAGCAAAATCTCCATAGAATCAAACTGCTTCTCTGTGATGATAAGACAGCGGATACTCCCTC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCCTTTTTAAATCTTTCTATGCTAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [76.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //