Array 1 127424-127680 **** Predicted by CRISPRDetect 2.4 *** >NC_009634.1 Methanococcus vannielii SB, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 127424 37 100.0 37 ..................................... CATTTGTAGCATAACAGACGTATTGATTACCTCTATC 127498 37 100.0 36 ..................................... TCTTTGAATATACCATCTGATGAGTCAGCTAAGATT 127571 37 100.0 36 ..................................... AACGGATATCGATTATATAAGACGATTATATATTGA 127644 37 97.3 0 ...................................G. | ========== ====== ====== ====== ===================================== ===================================== ================== 4 37 99.3 37 ATACGAAACGTTGATCCATCAAAACAAGGATTGAGAC # Left flank : CAGATGGATAAATTTGAAGTAATTGGGCAGGATTTTGACCGGGAATTGATAAACGGAGAAATTACTACAAAATTCCTGTAAATTTATCGGATTTAGCAATAGTAACAAATATCAACCCGTTATTTCAAAAACAGGGCGTTTATATTAGTAATAATATATACTTAAAAAATAATAACGTGTAGTTGGGAGAATTATTACATAATTTAATTCAGGGGTTTTTAAAAGGTATTCTTACATAAAAACAGTTTTTAACCAAAAAATCTGCTAACAAAGTGTTTATATCCATATTTATCTTTAAAAAATATGTAAAGCAAATCAAAAACTATATATAATTTTTCCGCTCATAAATTAAGTTAAATAAAAAGCAAATACATACCCGAAACAAGAATAAAGTCTTTAAAATGTGATTTTCTAAAAAGACGTTGTTTTAAAATCTAACCGATTTTAAAGGGCTTTTGAAGAAATGAAGCATTTTTAGAAAAATAAAATTTTTGCTAAGG # Right flank : CCTTTCAACCTACGTGTAAAGTACCCATATTCAAATAATTAATAATTCACTAAAAAATGCATTTTAAGATCTAACTATCGTTTAGGAATTAACAAAAAAAACTTTAACTTTTTTCAATATAAACAATTCTCAAAAAACTTATTTGAAAATTAAAAAATAGGGTATAAAATTATTAGGTAATCATTAAGGTTGGTTGAAATATTCAGACGGCAGCAGTATTTTGGATACGTCTTCTTTACAGAAATCTACTTTTTTTACATCCGAAACCCATTCTTTATCCTTATTTACATAATATACTGAAATATCTTCTTCTGTGATTGGATTATTCGGATCCAAAACCAGTTCCTGTAATCGTTTCAAAAGGTATTCGCTATGGGTTTCAATTATCATTTTTGAGCTTTTGTTGTCATTCAATGTTTTGTCAACAAAAAGATCTGCAAGATTGCCGTGGACTGCAGGGTGCAGATGTAGTTCGGGCTGTTCGATTAAATACATATTTT # Questionable array : NO Score: 2.82 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATACGAAACGTTGATCCATCAAAACAAGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 270116-262750 **** Predicted by CRISPRDetect 2.4 *** >NC_009634.1 Methanococcus vannielii SB, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 270115 37 100.0 36 ..................................... TCATATATATAGTTATGCTTTTATAAAAAAATAGTC 270042 37 100.0 40 ..................................... GTATAACGCAGTTGCCCCCAAATTACTTTTGATTACCTGT 269965 37 100.0 36 ..................................... ATACTCAAAATCTTACATATTAACTCCAATCGTTTC 269892 37 100.0 35 ..................................... AGATATGCAGTTATTAAAAGTTAAATTTTTCGGCC 269820 37 100.0 34 ..................................... TACTTAGTGTAGATAACTATATATAGTAAGTAAT 269749 37 100.0 35 ..................................... CATTAACTATCTTGAAGAAAATGCAAAAATTGAAA 269677 37 100.0 36 ..................................... GTATTAATTCAACAAATGAAATACAAAGACAGGATA 269604 37 100.0 36 ..................................... TTTTGACCCGATATTATAATATAATATTATATATCG 269531 37 100.0 35 ..................................... ACGTTCAGTCGGGAGGGGAAGGCATCACATACAAC 269459 37 100.0 37 ..................................... CCAATCATCGCAGTAGCAGTAATCATGCTTGGAGCAG 269385 37 100.0 33 ..................................... ACGGAACGTCAATGGCAGGAATTGCATCAACAA 269315 37 100.0 35 ..................................... TCCCTTCTTTTTGATTGTTTTTATGTATTCTCACT 269243 37 100.0 36 ..................................... CTCTGCTAGTTATAGTAATAGTTGGGGTAGAATAAA 269170 37 100.0 35 ..................................... CTGATTTGGGAATCGCAGAAGTAGTTGACAATGAA 269098 37 100.0 35 ..................................... TCCCTTCTTTTTGATTGTTTTTATGTATTCTCACT 269026 37 100.0 35 ..................................... TTCAATTATATAATAGTCTTCTATCCTTTGTAGTA 268954 37 100.0 37 ..................................... AATATTCTATCGAAAATAGAAATAATAAAAAAGTGAT 268880 37 100.0 36 ..................................... TGTAATCCCTTTTATCATATCCTTTATCTTTTAGTA 268807 37 100.0 37 ..................................... CTTATTATTTCATAATGTATTTTATCGAATTGTTTTT 268733 37 100.0 34 ..................................... TAGTATAATAGATAATATATTATTATAAAATAAT 268662 37 100.0 36 ..................................... AATTTAAAATTGTTTTCACCATATAAATTAAAAGCG 268589 37 100.0 32 ..................................... TCAATTAGAGATATCGTAAAAAAACATTTTGG 268520 37 100.0 36 ..................................... AGACGAAATCCTAACGACGAAAAAACAATAATAGAA 268447 37 100.0 41 ..................................... CGTATTGACTTAGCACCTGAAATCAAATTAAAAGAGTCAAT 268369 37 100.0 36 ..................................... AACTTAAAATGTGTGGTTGTCGACGAGATTAGTGAT 268296 37 100.0 37 ..................................... TGCTGGAATGAATAAATTTATCAGAATTCCTTACAGT 268222 37 100.0 40 ..................................... ATTTCACCATTAATCGACAATTCAGTAAGTATTTTTTCAA 268145 37 100.0 37 ..................................... ATTATTTCAGTTGCTTTTTTTCCAGCATAGTGATCTA 268071 37 100.0 38 ..................................... TCAAGTCCTGATCCAGATCATGACCTTCAGGAATTGGA 267996 37 100.0 36 ..................................... GAATCCGGTAGCTTACATAATGGTGAATTAGAATCA 267923 37 100.0 36 ..................................... TCAATATCGTTCATGTTCTCACTATTTTTGTTAAAT 267850 37 100.0 34 ..................................... TTAAGATAAATCTGGGTCCCGACCCGGTGATCTT 267779 37 100.0 39 ..................................... TATCATCATAATTAAGACATGTTTTTACCATATTCAAAA 267703 37 100.0 36 ..................................... AAGGTGTTATATTATGCAAGAACTCACAAACAACGA 267630 37 100.0 35 ..................................... TATATAGAGAACGTATTAGTTCTGAATAATCGATT 267558 37 100.0 38 ..................................... TATAATACCATACCTCGAAAAAATTTGAAAAATCTGAG 267483 37 100.0 35 ..................................... ACAAATTATTGGTCTATTATGTCGTGTGAATAATT 267411 37 100.0 36 ..................................... TAAAAAAAACTATGGACCTGTAACAATCGAACAAAG 267338 37 100.0 36 ..................................... CAAGAGTTGGGTCTACTTCAACAGTCTCGTTATCGT 267265 37 100.0 36 ..................................... TAACTTTTTTCCCATAGTAAGCAACAGCCGAGTTGG 267192 37 100.0 36 ..................................... GCTTCTTCTTCAATAATTTCTACCATTTCCACATCT 267119 37 100.0 35 ..................................... ATTTTAATTGATTTTTTAACTACAATTAAAATAGG 267047 37 100.0 36 ..................................... GTCATTATCGCCCCCTTTCAATCAATAATAAGTAAA 266974 37 100.0 38 ..................................... AGAATAACGGTTGAGTCACCATCTCTAGCTCCTCTTCT 266899 37 100.0 37 ..................................... AAGAAAACTTTAATAAATATTGCTAAATTGTGAAAAA 266825 37 100.0 35 ..................................... TATAGTAATATTCACATATTATAAATTGTAAAATA 266753 37 100.0 38 ..................................... AGTCAGCCCCCCTAAGGTCTGCACCCTCTAGGTTTGTT 266678 37 100.0 37 ..................................... GAGCATATCAAATTAATATTTTAGCAAAAGATATAGA 266604 37 100.0 37 ..................................... TTTTCCGGTTACCTACTGTGCAAATAATATCTTGGTA 266530 37 100.0 35 ..................................... ATATGGATTCTATGTGCTGAGCTTCTGTAATATTT 266458 37 100.0 40 ..................................... AGTCATATGATACTAGTTTTTTAAGGGATACTAAATAGTA 266381 37 100.0 35 ..................................... TGTAGTCCCTTTTATCATATCCTTTATCTTTTAAG 266309 37 100.0 36 ..................................... ATAAAGAAAACTTTAATTGAGGGATCAACATGAAAA 266236 37 100.0 38 ..................................... ATGGCTTTAAACTTTTTATCTTTATTTTGCATAAATAG 266161 37 100.0 37 ..................................... ACGACTCAGATATTATATATACTGAGTACGGCCAAAT 266087 37 100.0 39 ..................................... GTGTCGAAAGATTTGCATTCGAGATTACTGAAGGGGCAT 266011 37 100.0 35 ..................................... TATCCTGCTTCAACAGTTACACTTTGAACCGATAA 265939 37 100.0 36 ..................................... TCCGAATATGTAGATTTTCAAGAACTAGAAGTTCAG 265866 37 100.0 37 ..................................... ATGTCTGAAAAAGACAGTTAAGGCATAGTTTGTCTGA 265792 37 100.0 38 ..................................... ACGCTTTGTAATTCTTTCTTGCCATTGCTTTTTGAACT 265717 37 100.0 36 ..................................... CCAAGTGAGTACTTCGGAAAAAAACTACTATTCGAT 265644 37 100.0 37 ..................................... ATTTCTCATCTGTGATGTTTGCCATTGCATTATTCTT 265570 37 100.0 36 ..................................... ACAAGGAAAAACTCGTTTAAATTACAGCAATTAACT 265497 37 100.0 35 ..................................... TTAAACTCAAAATTGATACAGGATACGTTGATTCA 265425 37 100.0 34 ..................................... ACTTCACAATAAAAGAAATGGAAAAACATGAAGG 265354 37 100.0 38 ..................................... CTGCGTGGAAAATCAGTTGAATAACTGATCTTTCGTCT 265279 37 100.0 37 ..................................... ATCGCTACGGAGGTAAAATTATTCCTATGTGATATTT 265205 37 100.0 37 ..................................... ATAATTATCAAATAATCATTATCTTTTTTGGAGTGGT 265131 37 100.0 39 ..................................... ACAACACTTGAAAGTGGTGCAATGTGTGAAGACTGTATC 265055 37 100.0 36 ..................................... AAAGATGACTTATATCGAGAGAATGTTGAAGGAGTA 264982 37 100.0 36 ..................................... ATGAAGTACTGTGCCAATTCATATGGATTTTCACTG 264909 37 100.0 37 ..................................... ACGAGGGCATTCTAACCAATGAAGAAATTAATTTATG 264835 37 100.0 36 ..................................... TATTGATTTTAAAGCGGAAGTAGAAACATTGACAGA 264762 37 100.0 35 ..................................... GAAATAAAACAGAGGGATAGTATAGCAACTACAAA 264690 37 100.0 35 ..................................... CAAAACCCTTAATATTCGATACTGATTTACTGATT 264618 37 100.0 36 ..................................... TATCATCCCTTTTATCATATCCTTTATCTTTTAAGA 264545 37 100.0 38 ..................................... ACATCCCACACTTGAGATTGGTTCCCCTCATATCGAAC 264470 37 100.0 39 ..................................... ATAATTATGAAAATATACCAAAAAGAGATGGATGAAACT 264394 37 100.0 33 ..................................... TAATATCATATAATTTATAAAATCCGGTTCCAA 264324 37 100.0 36 ..................................... TCACACTTTTTAAAGTGTGTTAAAAATAGAACTATA 264251 37 100.0 39 ..................................... GTATAATAATCTTTTAATTTCATCTTGACAAAGAATTGA 264175 37 100.0 37 ..................................... TAATGGTTTTTAATGTATACCGTTTATCAATTCTGGA 264101 37 100.0 39 ..................................... TATAGAGAAAATGTTGAAGGAGTACAAAACATTATCGGT 264025 37 100.0 35 ..................................... CATTACAACAATGGCACAACCCAACACATAGAAAC 263953 37 100.0 37 ..................................... CCAATCATCGCAGTAGCAGTAATCATGCTTGGAGCAG 263879 37 100.0 33 ..................................... ACGGAACGTCAATGGCAGGAATTGCATCAACAA 263809 37 100.0 38 ..................................... TTATTCATCGCTGCAGCAGACACGTACTACATCACGTA 263734 37 100.0 36 ..................................... CTCTGCTAGTTATAGTAATAGTTGGGGTAGAATAAA 263661 37 100.0 35 ..................................... CTGATTTGGGAATCGCAGAAGTAGTTGACAATGAA 263589 37 100.0 37 ..................................... ATTCATACTTGCAGGATTAACAGTAGGTGTTTTCCAG 263515 37 100.0 35 ..................................... AAGCCGATACATTGGATTTTTCCGGTATCGTCGGA 263443 37 100.0 40 ..................................... ATTCGGATATTCTCCATATGCATAGCATAAGCCTGGCCAG 263366 37 100.0 36 ..................................... GGTATCTTACCCGAAGCACCAGTTCTCTGAATTGTA 263293 37 100.0 35 ..................................... GTATCTCTTTCAGTTGAAACAAGGAAAAAAAGACA 263221 37 100.0 36 ..................................... CAGACATTACGGAACTTTCAACGAACACCTATAGAA 263148 37 100.0 35 ..................................... AAATATCTGATTTTGGAACCGCAAACGGCGTAACA 263076 37 100.0 35 ..................................... TGATGGAACTATAAATTTAGGTACTTACGATTCTG 263004 37 100.0 37 ..................................... ACGAGTGCGAGCCATTACATAATAGGATATTAGATAG 262930 37 100.0 36 ..................................... TTGTATAATACGACTCATTAGTACTTGCTTCATTGG 262857 37 100.0 36 ..................................... CTATTGAGTCGACAGCCTGTGCAACTTCCTTAATGG 262784 35 89.2 0 ..........................GA...--.... | ========== ====== ====== ====== ===================================== ========================================= ================== 101 37 99.9 36 GTAAAAGAGCATAATGCATTAGAACAAGCATTGAAAC # Left flank : AGAAATAGAAGTGAATATAAAAGAAATAAATAAGCTGAATAAATATTTAGAGGAGTTTAAAAAAGTAATGTCTGGACATTACCCAAAATCAGCGTCAAATAAATTAAAATGTATTGATTGTTGTTATAAAAATATTTGTGTAAAATAATTGTTCCTTAAAAATTATAAACTTTAATTTGAGCTTATTTTTTAACATTGGTATCTAAAAAATTCTTAAAAATACGTAATACTTAAAAATAAATCTTTAAAAAGGTATTTTAACATTTTAAATTTATAAAAAGTACAAGTTAGTAAATTAACAAAATAATAATTATTTAATTTAAAAATATTTAGTTACCCAAGTGCATATTTAATTATAACCTTTTATTATGTGCCTAAATTACAAAATAAATGTATATTACTTATCAATAATTTTTGTTGATAAAATGGTTCGAAACATATTTATACGTGGGAATTTAATAAGTTACATTGCAAATTATGCTTTGAATTTTACATCATCT # Right flank : TCGTAAGCCGATAAGTACTGTATAATAGAAAAATGGTGAAAGAGATTGATAAGATTCGCCCTCAGACAAGGAATATCCTTCAAGAACCGATTTGGGACAGAGAGGGCATACTCCTTATCAATTAATACAAAATATGGAATATTAAGGATTTATCACTGGCTGTTATAGATTTTGCAAACAGTTGGTTGGTGGAAAATCATTACGATGTTGCATTTTTTATCTATTAGTTTGATATGATTCTCGGATACGAGTCTTTGTGGAACAGTATTAAAATAATAGTTTTCTTTCAAATATTTTTTTGTTATGGGAAACATTTTTAAAATTAAAAAAACGCCCTCTTGACCACCTATTTTATATATTGAACCATCTTTATTTCGTATAATGTGATATCCGTCACAAAACCCTCTTTTTTCCACTTAACGTTCTATCTTAGGTTCATATGTTTTGATTTTAGTAGATAACGGAATTAACCAAGGTAATCCTGTTTTTTTATCTTCAAC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAAAGAGCATAATGCATTAGAACAAGCATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.40,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : NA //