Array 1 162449-158258 **** Predicted by CRISPRDetect 2.4 ***
>NZ_SUMG01000002.1 Isachenkonia alkalipeptolytica strain Z-1701 Z1701_scaffold_2, whole genome shotgun sequence Array_Orientation: Reverse
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
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162448 37 100.0 36 ..................................... TTTTCTGCTAAAATTTTCATCGAAACCATGGGAGGT
162375 37 100.0 36 ..................................... ACGTTAACGGTCCCTAGTATCAAGGGCGATGATCTC
162302 37 100.0 36 ..................................... TGGAATACTCATAGACATGAAATAGTTGATTTTTCT
162229 37 100.0 36 ..................................... ATGAGGTCAATCATTCTGAATATCTGGCTTTCACCC
162156 37 100.0 37 ..................................... ATGTCGCAATTACTAGCTGATATGGGTGAAGTTTTTT
162082 37 100.0 37 ..................................... ATTTCTGGACAGTTAACCGTAATGATTGTTTTACTTT
162008 37 100.0 36 ..................................... TGTACGAAAGATTTGAAAACGTAAGACAGCAATATT
161935 37 100.0 35 ..................................... GACAAACTATCTAAGTATTATTATTTTGAGCAAAA
161863 37 100.0 37 ..................................... TGTTACTGCCTTCTTTCGCATGAACAGCGATCCCTGT
161789 37 100.0 37 ..................................... TTAGTTAGCGCCACTTTCAAATTCAGAGGCGGTTTCA
161715 37 100.0 37 ..................................... TACACCAATCCTGCATCAATAATTATCGGTTCAATCG
161641 37 100.0 35 ..................................... TGAGTGATAATATCATTTGCCTGCATTTCTCCGAT
161569 37 100.0 37 ..................................... ATTTTTCTTCTGCTGTCATTGGTAACAACTCCTTTTT
161495 37 100.0 36 ..................................... CTCTGTCCATCAACATAAAGTCCATTTCATCTTCAA
161422 37 100.0 36 ..................................... ATAGTACAGTTGAGTCTAGTCCACTTCATATTTCTT
161349 37 100.0 36 ..................................... ATCCGATCTCGGAACTTCATTGGATTAAGAGGTTAT
161276 37 100.0 36 ..................................... ACAGGTGCGGGAGTTGCTACGGGATGCGCTACCATG
161203 37 100.0 37 ..................................... ATTATAGTTAACAATTCGCTTGTTTTTTCTAATACTT
161129 37 100.0 36 ..................................... CAGAGATATCATAAAATCAGCGACAAAAAAAATATT
161056 37 100.0 36 ..................................... ATATGTTCTTCTGCTAACTTGCGAAAATGTCTGATA
160983 37 100.0 35 ..................................... TTAAGTAGCCGCCTCGTTTCCATATCAATATAATC
160911 37 100.0 36 ..................................... AGGTCGGCTTTCTTTGCTCTCTCGTTGTATTCAATT
160838 37 100.0 36 ..................................... AGATAGAAAAATGATTAAAATTGATAGGATAACCGG
160765 37 100.0 36 ..................................... ATCAAGAAAGAGTTGCAAACAAAAAAGCAGGACAAG
160692 37 100.0 36 ..................................... AATATGAATCACTAGGAATCACAGAATTGTATCATC
160619 37 100.0 35 ..................................... TGAAGAAATACAACCGGAAATCTACGACGCATTAG
160547 37 100.0 35 ..................................... AATCACTATGAACTACTAAACAATGAAGACTTAAA
160475 37 100.0 37 ..................................... CCCATGATATCCTAGTAACATGGGACAGAAGTAAATT
160401 37 100.0 35 ..................................... ATAACACGAAGTCGGATTTCGAAGCATGGTGCCGA
160329 37 100.0 36 ..................................... TGGGATCGGGCAGCATGATGGTTAGTGCTAAGAATG
160256 37 100.0 35 ..................................... CGACAGCTATATAATCTAAAGGAGGCGCAACATGG
160184 37 100.0 36 ..................................... ATTAAGAATCTCTGAGGAATAATTTGCTTCGATCAG
160111 37 100.0 35 ..................................... AACGTCCGCAATGGCCCTTCTACGAAAAATAAGGT
160039 37 100.0 35 ..................................... ATCATCATCGGAGGCGACACAACAAAAGTAGGCAT
159967 37 100.0 35 ..................................... AGCTCTTTTAAATTCTTGTGAACATAAACCTCAGC
159895 37 100.0 36 ..................................... CCGAGCTTTGTTTCCCGTGTTGGCAAGGACTACTTT
159822 37 100.0 36 ..................................... TACAAACGCAAATGTGGAAAACCGATAACCTAGGTG
159749 37 100.0 37 ..................................... TAGATGATTCGATCGTGCTTCTTAGCGAACCGATCAA
159675 37 100.0 37 ..................................... CAAACAGGCAGGGAACAGCGTAACCGTGCCGGTAATT
159601 37 100.0 36 ..................................... AACGCTCCTTGCGAATAATCAAAATGTGTAAAACAC
159528 37 100.0 34 ..................................... TGGCCGTTTGAATCTCTTCCTCGGTTGCGGAAAT
159457 37 100.0 37 ..................................... TACTTATTCCGGAGCGAGTGAGCGTCGACGTTCTTTT
159383 37 100.0 36 ..................................... TACTTTACCTTGGTGCCAGGCTTCATCTGACATTTC
159310 37 100.0 36 ..................................... TCCCTCCTTCTCCTCCATATACCAGCCGATTAGTTC
159237 37 100.0 35 ..................................... AACCTTCCCTTGTCCGGAATTTGCGTGGCCGATAA
159165 37 100.0 36 ..................................... ACACATGCTTCCCTTTTGCTACACAAGTATCAATCA
159092 37 100.0 36 ..................................... CCTTATCCAGTCGAAAATCCAACGCTTTTTTTACTT
159019 37 100.0 36 ..................................... TCCACCATGCTCGGTATATCGTGCTTGTATATACTT
158946 37 100.0 35 ..................................... CTCCATACCTATCGATAATTATTGTTGCGTGTGGG
158874 37 100.0 36 ..................................... AAAAACAACAGCCGACTTTTGAGCGTGACGACGAAA
158801 37 100.0 36 ..................................... AACTACCTCCTTTGTTTTCATGGTCTTTCCCAAGAG
158728 37 100.0 35 ..................................... TTATGTAGTCCTTTTCGATAAGGACCCTTTTGCCT
158656 37 100.0 37 ..................................... ACCATAGCAGCGCTTCCTCTACATGATCCAGGGCCTT
158582 37 100.0 35 ..................................... TTTTCGAGAACCTCGGAACAAACTTCCCGAACGAC
158510 37 100.0 35 ..................................... TGACCGGGTCCATGAGGTCGACGTCGTGGATCACG
158438 37 100.0 36 ..................................... CCTTCAATATTGCTTATCCATCTGTCCATTCCTATC
158365 37 100.0 34 ..................................... AAGTCAGAGGAGGCGGAGTAGGTGACCAAAGAAG
158294 37 97.3 0 ...................................T. |
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58 37 100.0 36 GTTCCAATGTAAGATCCACTAAAACAAGGATTGAAAC
# Left flank : TTGTAGGGGTGGGGATAGACTTGTGGAAGTATCTATGAAAATGAAAGATAAAGAGAATGTGAAAAAGGATATTATGTCCTTGCATAAGGTTCTTGCAGGATATTTTCCTAAAGCTACGACGGTTAAAGCACGTTGCACTGATTGTACATATAAAAATATATGTATACAATAAATCGTTTAGCAAATGGTTTCAAATATTTGTAAATGTAAATTGTTTGCGTTATAATGAAAATTGAAACATTAGGAAAGGAATCCACAACCTTTGCATGGGTTTTTATAAAACTGCCTAGTAAAAATGCGGGTTGTAGCGATTGTGGTTGCAAAATTATTGAGAAAATTCCATGTAATCTCTGTAATTAAGTATTAAGAAAGAGTGTGGCCTATGTTTATATGTCAAAAACAACTGTTAATATTAATAAAACTATTGAGTTTTACTTGTTTTATACTCATCAAAAAAACACTACAATCAGGTGGCATCAATATATAGCTGTGTTTTTGCT
# Right flank : TCATTCAATATAGCAGTATAAGAGAACATAAGCGTAATTATTATGAAACGATACTAACATTTCTTTAAGAGGCAGTATTTGAGAGACATTATAATGAAGAGCTTATAGGATAAAAGAAAAAAAGGCCAAGCATTTAGCTGGCCTTTCTTTCTTTTTCCCTATGGTCTCCCACATCAATTTTCGGTGCGGGAATGTTACTGGTATCCCCTTGCTCTACCGTATCGTAGGAGAGTATTTTTGTAGGGCAGGTATAGACACAAGTGGAGCATTTTATACACTCGGGATGGGTGAACTGCTTTCCATCTTTAAAGGCTTCATGGGGAGAAAGCTGGGCGGGACAAGCTTTAGAGCATAGTCCGCAGGCTTTGCACTTATCGGCTTCGGGAGTTACCACTTTGTTGGTTTTTTTATTGATTCCGGTTTTGGTACCGAAATAATGCATGATTCGCTGGATGGTCCCCATGGGGCAAAAGGTGCACCAGGTCCGGGGGGCAAAGAAA
# Questionable array : NO Score: 6.26
# Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTTCCAATGTAAGATCCACTAAAACAAGGATTGAAAC
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5
# A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT]
# Reference repeat match prediction: NA
# Secondary Structural analysis prediction: R [-2.60,-3.10] Score: 0.37/0.37
# Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41
# AT richness analysis in flanks prediction: NA [73.3-68.3]%AT Score: 0/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: R [0,5.28 Confidence: HIGH]
# Array family : NA
//