Array 1 13904-14231 **** Predicted by CRISPRDetect 2.4 *** >NZ_FMIQ01000069.1 Hafnia alvei strain GB001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 13904 28 100.0 32 ............................ AAGCCGGAACCGTTCGACGCAAAGACGCTTAC 13964 28 100.0 32 ............................ GTACGGTCATCAGATTTATGCTAATGCTTTAA 14024 28 100.0 32 ............................ CTGTAACCGTTTTTGTGTCGTCGTCTATCGTG 14084 28 100.0 32 ............................ ATCAGTGCTTGACGGTCAGCCACAATTTTTCC 14144 28 100.0 32 ............................ TGACGCCACCGCCGCACGTGTGACCGTCAGCC 14204 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 6 28 100.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GATTGAGTCATTTTAAACCTCGAGAGTGACTTAATTAATGACTACCACTGAGACGCTAAACTCGGGTGGCAGCTCAGATAGGGTTAGCGTCACCGACACTCTCGAAATCAGTGCTTCTTGCGAAGCCCCTGCCTGAGCCACCATATTAGGGTGAATCTAAGCGCACTCCATTATTATGGCAAAGTGCTGTCGAGAGATGTATTGCGGAACGCTAATTCCGACTACGGATTTTTCCGTAGCCAGAAAACTATATGCTTGTGATTTCAACAATGAAACGGGCTGGATGCATTTACAGTGAGTTACTGTTAGATATGGAATCAACTTCTCGAAAATTGGGGGGTAAAATGCAAAAAAATCTATTTTTCAGCCAACCCTTTTTTTTCACCTTCCTATAACTCATTGATTTTATATAAGTGTTCATAGGGAAAATAAAAAAAGGTTATGCAGTAAAAAATGAGTTACGGATCTGATTATTCGAAGCTTTATGCGAATATTCTACA # Right flank : AAGTGCTAGAGCCGTTGCCAAAGCTATCGAGGCAGGCTGGATTTAGGGAGGCGAATGGTCAGCGGGAACCTAGTGATGTCGCAGTCATCGAGCTAATACCAGAACATCCACATGGGCATTATTGATTATGAATAATTCATTGATATTACTATTTTTTATTTCTTCTTTTTCTTTTGCTTCAAGCGATATTAACAACGCCACAAAGGTGGCTCTAGAATTCAACCAATGGTATCTGCAACAGATTGAAAAAGATGTCTATCCGCTGCTGGGGAGTGGTAGTCCAGAAATGAATGAATACGTAACCGCTGAGACGTTGAGAAAGCTGCACAAGGCAGTGAATAGCGATGATGAACTCTATGATGCCGACTTTTTTACTCGCTCACAGGACATTGGGACTGACTGGCCGAAAAATGTCACCGTGGTTTCTTCCGATCTCGATCCGGTTTGCCTGAATGTTTATGTTGCTTATGGGAAAGATATGTCTCACACGATCATTGACT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 75525-76152 **** Predicted by CRISPRDetect 2.4 *** >NZ_FMIQ01000067.1 Hafnia alvei strain GB001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 75525 28 100.0 32 ............................ CATGTCTCACGAACCCACACGAGGTCGCCAAC 75585 28 100.0 32 ............................ GTGAACGGAACGGATTATTCAACGATTTATGA 75645 28 100.0 32 ............................ CGAACCAGTGCCTCGGCAATGTGGAACAACGC 75705 28 100.0 32 ............................ TTTGTCGTCAATTTCCAACGACTGCATTGCTA 75765 28 100.0 32 ............................ TCACGGAAATAATATGCTTGATTTTCTAGATG 75825 28 100.0 33 ............................ GTTACCACAACCACTCACGACAAATAGCGCCGG 75886 28 100.0 32 ............................ AAATCGGCGTAATACAAGGCGTGAAGTTTGAT 75946 28 100.0 32 ............................ TGGTATCTGGCTAGTGTTGCAGTAAATGAACA 76006 28 100.0 32 ............................ TGTAACGATTCGAATGGTCACAGCAGCACAAG 76066 28 100.0 32 ............................ TGAACACTGATTTGCGTCAGCGCTTTAAATGC 76126 27 85.7 0 ..........C..........-C.C... | ========== ====== ====== ====== ============================ ================================= ================== 11 28 98.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GGTGACATTCACCGGCAAAGTACGCAACCACAATCTTGGCGATAACGTCAGCGCGTTAACGTTAGAGCACTATCCTGGGATGACGGAAAAAGCGTTAAATGAAATTGTGGCTGAAGCCCGTTCGCGTTGGCCTCTACAGCGTATTTCGCTGATCCATCGGATTGGCGCAATGTATCCCGGCGATGAAATTGTTTTCGTTGGGGTGACCAGCGCACATCGCAGCATGGCCTTCGATGCCGCCGAGTTCATTATGGATTACCTCAAAACCCGCGCACCGTTCTGGAAGCGAGAAGCAACAGAGCAGGGCGATCGCTGGGTTGATGCCCGCGACAGCGACCACCAAGCGGCAAAACGCTGGTAAACCCTCCCAACCCTTTTTTCTGACTCCATGCTAACTCATTGATTTTTAATTCCTCCAATGAGCAGCCAGAAAAAAGGGTTAAATTCCCCAAAATGAGCTACCGATCTGATTAATCGAACCTTTCTGCGAATATCCTACA # Right flank : ATTAGCTTCTGCTTTATTTTCACTATACTTATTTCAGCGCTGCACCTTTGTGGCAGTATTTGAGGTAACTTTCGTAGAGGTAAGGGGCTAATTTGATTTGGTTTGAGCAAGGTCTTTATTTGCGGGTTGAGGAGTTGGAGAATGGGCCACGGCCTTTGCCGCTGCGTAGCGGGTTTAGTCGTGAAATAGCCTATCGGGCGTTAGGCGTGTTTAATCCCTCAGAATCATCGGATGCTTACTACATATTATCTAACGATCGGGATGAAATATGGTTTATCTGTAATCGACACCTACGGACGGTTGCGCTTTTACCTGATACCACTGATTTTAGGCGTCCGATTACCGATTAATCATGGCCGTGGCTGTAATTTTATCTGTTTTAATTGGGATATAACTTTTTGTTAAGAACTTTAACGATACAAAAACTGCTCATTGTCACCTTGTACCCGAGTTATTTTCCAACCGTCCTGCCAGACGAGCCAGAGAATGAGGTGTTGCTG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //