Array 1 94968-94206 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFJXQ010000006.1 Escherichia coli strain FC3 NODE_6_length_203658_cov_23.459478, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 94967 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 94906 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 94845 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 94784 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 94723 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 94662 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 94601 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 94540 29 100.0 32 ............................. ACCTGGAGGCGAAAAAGGCGCTTCGACGTAAA 94479 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 94417 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 94356 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 94295 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 94234 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 13 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 112160-110484 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFJXQ010000006.1 Escherichia coli strain FC3 NODE_6_length_203658_cov_23.459478, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 112159 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 112098 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 112037 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 111976 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 111915 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 111854 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 111793 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 111732 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 111671 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 111610 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 111549 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 111488 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 111427 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 111366 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 111305 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 111244 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 111183 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 111122 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 111061 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 111000 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 110939 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 110878 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 110817 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 110756 29 100.0 32 ............................. CCTAGCCCGATTATCGGCATGAGCGATGCGGA 110695 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 110634 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 110573 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 110512 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 28 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //