Array 1 404-17 **** Predicted by CRISPRDetect 2.4 *** >NZ_UXFH01000005.1 Flavobacterium psychrophilum isolate 53-SE557_S24_R1.fastq.gz, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================================== =========================== ================== 403 42 97.6 27 G......................................... ATTGAAAAAAGCATTCTCTCGAATAGT 334 42 100.0 27 .......................................... ACCGGAAAAAGCACCTCGATTAATAGT 265 42 97.6 27 .A........................................ ACTGAAAAAAGCACTATTTTCAATATC 196 42 100.0 27 .......................................... GCGTGCAAAAGACCCATCTCCAATAGA 127 42 95.2 27 .......................T....A............. GCCTGCAAAAGACCCTTTTCCGATAGT 58 42 100.0 0 .......................................... | ========== ====== ====== ====== ========================================== =========================== ================== 6 42 98.4 27 AGTCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACA # Left flank : TCATTACTTCTACAAAGTAATTTCCTTTTGCAAAGCTTGAAACATTTATTTCTGAATGATTAGTTGTTTTTATTAACTGCCCTAATGTGTTGTAAAAATTCACTTTTTCTAATTGTAAGCCCTCTTGCAAGGCTATGTTTAAAATTTCTGAAACTGGGTTTGGGTATATTTTTAAAGCACTTTCTATTGCAAATGAATGATTAGAAAGTAAACCACCAGAAATAGGGCTGAAATTTCTCCAAACCGCGGCTGCCTGATAAACGGCTTGAGTACCAGTAGGAACATTTAAAGCACAGTTTGACTGAGTAACATTACCGAAGACATCTGCATTAATAGCTAAAGGCATTGTAATGTAACATTTTACTGTGGTTAAACGTTTACAATTATAAAAAGCAGCATTTTCAATAG # Right flank : ATCTTGCAAAAGCAGCA # Questionable array : NO Score: 2.85 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:-0.12, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.80,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [15.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 1 134-1846 **** Predicted by CRISPRDetect 2.4 *** >NZ_UXFH01000049.1 Flavobacterium psychrophilum isolate 53-SE557_S24_R1.fastq.gz, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== ============================== ================== 134 46 69.6 29 TAAT.T....A.ACC...CGGGT....................... TTTTGTTTTCGTCAAATTCCCCATTTGTG 209 46 100.0 30 .............................................. ATTAATGCGCTAATTATCGAAGGTAGCACT 285 46 100.0 30 .............................................. AGGACGATTATAAATTTATGCTAAATATTA 361 46 100.0 30 .............................................. AGATATATCTAATACTAGAGCGTACGACAG 437 46 100.0 30 .............................................. AAAAACAATATCGAAAAACTGAAAGAGAAT 513 46 100.0 30 .............................................. TATATCCGTGTTTGAATACACATTGCCACC 589 46 100.0 29 .............................................. CGTTTTCGCACGTGAAATCAAAGTACTAT 664 46 100.0 30 .............................................. TTTTAAAAAATGGTTAAGTAGGAAAACTTA 740 46 100.0 30 .............................................. TCCAGTAAGCGAGATGTCGTATATCAAAGT 816 46 100.0 30 .............................................. AGCCAATGCCTTGTGTCCTGTTATGTGTTC 892 46 100.0 30 .............................................. AAAAGATTTAGCAACATAGATGATTGTTTT 968 46 100.0 29 .............................................. TTTTACTTTTTATTTAAAGCAACTGTAAT 1043 46 100.0 30 .............................................. TAATAAGTTGCTCGTTTCCGTTTATTCCGT 1119 46 100.0 30 .............................................. AGTAGGTAATGTATTCACAATAGACACATT 1195 46 100.0 29 .............................................. AAAACGAAATACATACAGCGCACGCATTC 1270 46 97.8 30 ............................C................. AGGCACTTCTTTAGACTTAAATAAGTCTTT 1346 46 100.0 29 .............................................. AGTAATAGATGGGGGGTTTGAATGCCGTA 1421 46 100.0 30 .............................................. TCATCATCTGATGAAAATTGCTGTTCAATA 1497 46 100.0 30 .............................................. AAGCAAAATAAAATAAAAGAAATATTTAGC 1573 46 100.0 30 .............................................. AATCAAAATAAGGTTTTAAAAGCGGCTTGG 1649 46 100.0 30 .............................................. AGGGCTTCGATTTTCTCGGGTTTCCATTTA 1725 46 100.0 30 .............................................. CGGTAACATCGATATAACTTGCGAGCTGGT 1801 46 100.0 0 .............................................. | ========== ====== ====== ====== ============================================== ============================== ================== 23 46 98.6 30 GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Left flank : AAATGGTCAATGCCAATACAAAATTGGGGTATTGTTTTAAATCAATTTAATCTTATATTTGACAAAAGGCTCAGATTATAAAATCCAAGCCTAACTTTTTAACTTACACACTTTGCGGGATAGTGTCATCAAAT # Right flank : CATACCGCGAGTTAATCGTTTGATATGTTGGTGGTTATATGCTTATTTTGAAATTAAAAAACAGTTCTGTTTGTGTGTTGATATTCTGGTAGGTCTAATATTTCTAAATCCTATTTTTCAAAAAAGTTCTAATTGTTGCGAAGGTTTGTCTGTTTCTACAGGTTTTTTTCCATAAAAAAGCTCCATCATACCAAATTGTTTATCGGTTATTTGCATTACTCCAATTTTGCCGTGTTCGGGCAAACTATTTCTTATTCTTTTGGTATGTACTTCGGCATTTTCTCTGCTGGCACAAAATCGTATATAGATCGAAAACTGAAACATAGAAAAACCATCGTCCAATAATTTCTTGCGAAATTCACTGGCAATTTTACGCTCTTTCCGCGTTTCGGTAGGTAAGTCAAAAAAAACTAATATCCACAAACTTCTATACTGGTTTAAACGGGTGTAATGTTCGTCATACATAAATAGGGTATAAAATTTTTCTTGCGGCTCCCGCA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.91%AT] # Reference repeat match prediction: F [matched GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.00,-0.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //