Array 1 37433-35880 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDBO01000027.1 Klebsiella aerogenes strain GN02761 contig27, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 37432 28 100.0 33 ............................ TTGAGGTAATGGCGCAGTCTTCACAGCAAACAC 37371 28 92.9 33 ......................G.G... TTATCCTGCTGCCAGCCTAAGCGCCCGTAGTTT 37310 28 100.0 33 ............................ TAGTTTGCTCTGGCAGCATCGATTAAAAATTTT 37249 28 100.0 33 ............................ CTTATCAACCTCTATCGCTGAGGGGTCAGGCGC 37188 28 100.0 33 ............................ TATTGTCCCAACCAGCGCCCTCTTTCGGGTACA 37127 28 100.0 33 ............................ CGTAGCCAGGCTTGCTCGTACACCTCAAGACGA 37066 28 100.0 33 ............................ TTGTAGAAATTAAGACCTGCTATATCCTGTAGC 37005 28 100.0 33 ............................ TCAACATTGCTGAAAAAGCTGAACGACGGAAAT 36944 28 100.0 33 ............................ TTCCGGGTTGGTGATGATGATCATATCGGTACC 36883 28 100.0 33 ............................ CCGGGGAATCTACTGCCTGAAGGGTTGAGCCAA 36822 28 100.0 33 ............................ TAAATTTTATCGTCGCGGTCTTTGTGGTCGGGG 36761 28 100.0 33 ............................ CACACACCAGGAGAAATAAGTGTCGACTATTGG 36700 28 100.0 33 ............................ CACCGATTGATGCCGCGCCGTAAGCACGATTGA 36639 28 100.0 33 ............................ TTTATCGACTGGTCGAAAGATGCGCTGCTCACT 36578 28 100.0 33 ............................ CGACAGCCACAAGTGAATGAGGTTAATAGTGGC 36517 28 100.0 33 ............................ CGGTGAACGCGTTGCACTGCGTAGCGGTGGCGT 36456 28 100.0 33 ............................ TCCGCTTTAACAGCCAGCGACGCCAGCGCGTAT 36395 28 100.0 33 ............................ TCCTCAAGTGGTACGAGGACGGCGACAATAGCG 36334 28 100.0 33 ............................ TAATTACCGCGCCTTGCGGGACGTAGGTCTCGG 36273 28 100.0 33 ............................ TGAGCACGGGCTGACCATCAGTTTTGCTCGCAA 36212 28 100.0 33 ............................ CAATTCACTGCGCTTGATGGCAAGGTGGATGAA 36151 28 100.0 33 ............................ CGGGATTATCTCACCCTCAGAGAGCGAATCGCC 36090 28 96.4 33 ................A........... TGGACGGCGACGTTGATCCAACCTGGTACCCTG 36029 28 96.4 33 ...........A................ TACGGCACCGAATCGCAGCTGCTGGCTCAGGTT 35968 28 96.4 33 ...................A........ CGATGAATGGCCAATGATGACGGCATCCCAGTC 35907 28 96.4 0 ..............G............. | ========== ====== ====== ====== ============================ ================================= ================== 26 28 99.2 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAAGAGCGGCTCTGTATCGATCTGGCGTTTTCGCTGTCGAGGGAGATGGCGGGGCGATACGATAAACATAAAGTTTCTGAGGCATTCAGAAAACGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATTAATGAGCTAATGGGAGGAAAACGTGCTCGTCGTACTGGCAAATGATTTGCCGCCAGCGGTTCGAGGGCGAATGAAACTGTGGTTTGTCGAACCCCGGCCGAACGTTTTCGTCTCAGGCGTCAAAGATTCGGTTGCGCAAACCGTCGTTGATTACCTGATGCAGTACACGCCCGCGGAATCAGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGCTATGAAATTCGCTACAAGGGCGAGGTCAGGAAGCCGATTATTGAGGTCAGTGGGTTACAGCTTATTATTGAGACCCTAAAACTGTCGTAATACATGGATATAGTGTTTTAATTGTCGCTCTTTCACAATATATTGGT # Right flank : CAACTTCGACTGCGTTATCGCCCGTAGTGTGGAAGCTTGCTCCCAGCAGGCAAGGCGTTTTATGGGTTTTAGCCGTCTGCCAGATGACACACCGCTTCGATATTGTGTCCATCTGGCGCAATGACAAAGGCGGCGTAGTAATTGGCGTGGTAATTAGGCCGCAGTCCCGGCGCGCCGTTATCCTTGCCTCCGGCGGCCAGCGCCGCGTGCCAGAAGGCATCAACCTGCTCGCGGCTGTCGGCGCAAAAGGCGATATGCAGCGGCGCGGGTTTATCTTCGCTTTGATAGAGGCATAAAGAGGCATCGTTCGCCCCGGCTAGCTCCGCGCCGTAAGCCGGCTCGCCTTCGCCTGCCAGCGTCACGCCGAGCGGCGCCAGCGCCTGTAAAAAGAATGCCTTGCTCGCGGCATAATCACTGACGCCAAATTTGACATGATCGAACATAAATTCTCCTCGGTATTGGAAATATCTGTACGACATCACCGTGTCGTTAAAATGAGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 158670-160532 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDBO01000009.1 Klebsiella aerogenes strain GN02761 contig9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 158670 29 100.0 32 ............................. GCAACTTCTCTTTATCGACTCCGTCAGCTTAC 158731 29 100.0 32 ............................. TAATGACCTGCTGACTGCAATTGCGCTGGGCA 158792 29 100.0 32 ............................. TTGAGGCCTCACCGGGTGAAATTCAGGTATTG 158853 29 100.0 32 ............................. TGAATACTGGCGAACTGGTGCTGGTCGATACG 158914 29 100.0 32 ............................. CGCCGGGCTGATTTGCCCGGAAAGAACGGCGG 158975 29 100.0 32 ............................. TAACGGTAAATACGGCCCTGAATCCAGTGTGG 159036 29 100.0 32 ............................. TTCATTAAGCGTGTCAGCAATGACTATCTAAT 159097 29 100.0 32 ............................. GCTGTGCTGCAGGTTATTTTGTATATGTTACA 159158 29 100.0 32 ............................. TGTCGATAGCCATCAAAAGTGGTATAACCTTG 159219 29 100.0 32 ............................. GGGTATGCCCGCGCCACGGTGAGATTGTTATG 159280 29 100.0 32 ............................. CAGGTCCGTTTAAAAATCTCGACACGCGGCGC 159341 29 100.0 32 ............................. GCAACGTTAATTACGCAAAACCAGGTGTCACT 159402 29 100.0 33 ............................. CCAATAGCGCATTATTACCAGAATATCGCAAAC 159464 29 100.0 32 ............................. GCGGAGTGGCTGGAAACGGTTGTCCGGCCTGA 159525 29 100.0 32 ............................. GCCTATATGAGTGACCGCGACGGGTCTGTTCG 159586 29 100.0 32 ............................. GTTACGTAGGCGCGCTGCTCAATCAGCCTGAT 159647 29 100.0 32 ............................. GGCTTAAGAGGAAAGAGATAACGTCATATACT 159708 29 96.6 32 ............................A TACAGACGCGGCAACCAATGCGCTGACCTGGC 159769 29 100.0 32 ............................. GTGTGGTAATTATTGAGACGTGCTACGCCAAA 159830 29 100.0 32 ............................. AGTGATTCTCGTGCACTATCAAAGCGTCTGGA 159891 29 100.0 33 ............................. TTATTCAGGAATTCTATTGTGTCTTTTGCTTGC 159953 29 100.0 32 ............................. AGACAGCCAATAAATGGCTGCCGCAGCTGATG 160014 29 100.0 33 ............................. TTCGGCAACGAGCGCAACGACTATCTGATCAGC 160076 29 100.0 32 ............................. ATATGCAGGATATTAAAAATTTCAAACCGGCA 160137 29 96.6 33 ............................T GCGGTGGATAAAGCGCAGGTCGTCATGGGGGTC 160199 29 100.0 32 ............................. GCAGGAAAATCTACAGCCTTCCTACATAGGAC 160260 29 100.0 32 ............................. ACGCGCTACAACGTCCAGCACATCGCGATTGA 160321 29 100.0 32 ............................. CTCATTCAGTATCTCGGTCATTTTGTCGGCGG 160382 29 100.0 32 ............................. GGTAGGTAAAAACATGCCTCATAAATTATCGA 160443 29 100.0 32 ............................. TATTTCCCCTCGGTTGAGAAAGAAGTTAAGGA 160504 29 93.1 0 ............T.........C...... | ========== ====== ====== ====== ============================= ================================= ================== 31 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGTTGTCGGCAGGCGAAATCGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCAGCGATACCTGAGCCTGAATCAATGGGGGATAGCGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTCCCTCCTCGTCTGCGGGGGCGGCTTGCCATCTGGCTGCTGGAGGTTCGGGCGGGAGTCTACGTTGGCGATACCTCAAAGCGGATCCGGGAAATGATTTGGCAGCAGGTGATACAGCTTAGCGATTGCGGAAATGTGGTGATGGCCTGGGCAACGAACAGCGAATCTGGTTTTGAGTTTCAAACCTGGGGAGAGAACCGCCGCATGCCGGTAGATTTGGATGGCTTACGACTGGTGTCATTTCTTCCCATTGAAAATCAATGAGTTGAATGTTCTTTAATAATAATGAAATTGTTGGAATAAAGTTGGTAGATTGTTGGTGCCTTAAAAAGGCATTAAAAAACAGTAATATATGTTTAGA # Right flank : GTAGATTTGTTTTAGGTGACGATTGCCACTTCTCATTCCCATTTCATTCTCGACTCTTTAGCTTTCCCCACTAACCTTTCGCTCAGAAAAATCCGGAGATGGGCACTGTCGGCCAAATTTCTCAGCCCAGGGGAATGGCGCCCCGTTTTTCACGTAAAGCTGGTACAGCCGCTTAACCGATTGTTGGTCGCTCGAGACCCAATTGCTGGCATTGCAAAGTATAGCGGCATAAGCCTGAGATTTTCGCGGTAGCAAACTGGCTGCTTTTTCAGCAAGTTTTGCCGCCCTCCAGCGATAATGCTCAACATTGTTGAATGGTTTGGGTCGTGAATGCTGTATGCGATATTGCTCCTCGCTACCAACCCAGGAGTGTACTCCAGAGATATTGTTTGTGGCGTCTGCGCAGGACAGGTACGTATTTGCGTCACTTAAATACTTTTGGTCAGGCTCCAAAAAATAGCTCATCAGGTTGTTGCCATGCTCGCGTAGAATGACCGCAG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //