Array 1 14433-15665 **** Predicted by CRISPRDetect 2.4 *** >NZ_CTIQ01000024.1 Yersinia pseudotuberculosis strain IP32670, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 14433 28 100.0 32 ............................ TCAAAATACATTTGTGCTGGATACATTGAATT 14493 28 100.0 32 ............................ TACGCGTACGTATCACATCCGTGGATTAATGG 14553 28 100.0 33 ............................ CTAATCCAGCAAGCATAGAAAGGCTGATTGAAA 14614 28 100.0 32 ............................ AGTGATAATGAAGCGGATTGAAGTTAGTCGGT 14674 28 100.0 32 ............................ TTATTGAGCGCCTCCAAGTTCTCATTGAACAT 14734 28 100.0 32 ............................ CGAGTCCCGCGACGCGCTGGCAGAACTGCTTA 14794 28 100.0 34 ............................ GAACAGCAATGGGATGAAATTAATAATATTAAAA 14856 28 100.0 32 ............................ AGACACAGGCGAAACTATATTCTATATGAACC 14916 28 100.0 32 ............................ TATATGAATCAGCTTATAAATATGGGTAACAG 14976 28 100.0 32 ............................ TTGCACCGTGTCAGCTTTTAACGCATATAATG 15036 28 100.0 33 ............................ AAAAATGCCTGTGAGTCTAAATTAATGCGTTTA 15097 28 100.0 32 ............................ ATATTCATGACAAAACCGGCGTCATTAACTAA 15157 28 100.0 32 ............................ TTGCTAACATTCGCACCATTAGAACTTTTGTT 15217 28 100.0 32 ............................ TCCGGTCAACGCCACGGGTTGCTACATAATTA 15277 28 100.0 33 ............................ TTATTTAATTGGAATGGGTGGGGCTTCATGGGC 15338 28 100.0 32 ............................ TATGTCGGATAGTAACGTCGAGGGGTTCCGAT 15398 28 100.0 32 ............................ TTGCACCGTTTCTAGATTTAATGCTTTTAATG 15458 28 100.0 32 ............................ ACGCTAATCTCTTGCATAGTATCACCGAAGGG 15518 28 100.0 32 ............................ AGCCCGGACGCGATAGCGATCAATTCCAGCTC 15578 28 100.0 32 ............................ TCCGGTCAACGCCACGGGTTGCTACATAATTA 15638 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 21 28 100.0 33 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ATTGCTGCCCACGGCGCTGGAGGGCGGCCAGAACTACACGGTGTAGCACCAGATGGATCATCACAGAAATCAATAATATTAGCCCAATCACCATCGTCAATGACATCACATTGGAGAACTCCATCCCCAATCTTTCCAGCCACTGGCTTATTCTTTGTTGCATCACTGCTCCTATAAAGCATCAATCTGACTAAAAGGCCTTAGCCTAAAGGCTATAGGCGCAGGGGGTGCACCTGTTTACCCTTTTTTACATTGTGGTTCTGTATCTTTGTTCGATTGTTGCCCCGCGAGGGGGGAGACATCTTTATAGGCTGTGGTTTATGACATGGTTTGTGGAATTGTACTGTGGTTTTATTATGAGTTATGTTCTGACCCTATTTTTTTAGCTACTGCTAACTCATTGATTTTACATTGTGGTTATCGGTGGTCTAAAAAAAGGGTTTTTTCCCCATTAGCGAAATAAGTATTTTACAAACAGGATGTTATCGTATTATCTTACT # Right flank : ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTCACTGCCGCACAGGCAGCTTAGAAAAGCCCGGACGCGATAGCGATCAATTCCAGCTCGTTCACTGCCGCACAGGCAGCTTAGAAATCCTCGCGACAGCGAGGAGGAGGAGGGAGAGCGTTCACTGCCGCACAGGCAGCTTAGAAATCGAAGAGTGCATACAACGCGGTGATGATATGGTTCACTGCCGCACAGGCAGCTTAGAAACGCGTCTTGCGCATTCAGCCCGATCCCTTTCAGTTCACTGCCGCACAGGCAGCTTAGAAAGTTGATACCTTGTTTAAATTCAACGGTCTTTAGTTCACTGCCGCACAGGCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 15846-16714 **** Predicted by CRISPRDetect 2.4 *** >NZ_CTIQ01000024.1 Yersinia pseudotuberculosis strain IP32670, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 15846 28 100.0 32 ............................ AGCCCGGACGCGATAGCGATCAATTCCAGCTC 15906 28 100.0 32 ............................ TCCTCGCGACAGCGAGGAGGAGGAGGGAGAGC 15966 28 100.0 32 ............................ TCGAAGAGTGCATACAACGCGGTGATGATATG 16026 28 100.0 32 ............................ CGCGTCTTGCGCATTCAGCCCGATCCCTTTCA 16086 28 100.0 32 ............................ GTTGATACCTTGTTTAAATTCAACGGTCTTTA 16146 28 100.0 32 ............................ GTATGCCATCGACTGCGAGTGAGCGTAAGCGC 16206 28 100.0 33 ............................ AATTAGTTCGCGAACATCACTCTCAGATAAAAT 16267 28 100.0 32 ............................ TGCTTGCAGACCCTTGAGTAACAGCGCCCCCT 16327 28 100.0 32 ............................ ATATAGAGAGTTTAAAAACAGTTTACCTAACG 16387 28 100.0 32 ............................ CAGGCGGGGCGGCCCGATACTGACCCGAGAAT 16447 28 100.0 32 ............................ TTACAAAAGGTTGTCACTGATGACCGTCGAAT 16507 28 100.0 32 ............................ TTCCATTCAACCGTAACGCCCTTTATATTAAC 16567 28 100.0 32 ............................ CAGCAAGGAACATCGTCAGAAAAAACACTCTA 16627 28 100.0 32 ............................ GTTACGTGGCAAGTATCCGACCCGACGCTGGG 16687 27 85.7 0 ...................-A.A.C... | T [16711] ========== ====== ====== ====== ============================ ================================= ================== 15 28 99.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CCGCACAGGCAGCTTAGAAATATGTCGGATAGTAACGTCGAGGGGTTCCGATGTTCACTGCCGCACAGGCAGCTTAGAAATTGCACCGTTTCTAGATTTAATGCTTTTAATGGTTCACTGCCGCACAGGCAGCTTAGAAAACGCTAATCTCTTGCATAGTATCACCGAAGGGGTTCACTGCCGCACAGGCAGCTTAGAAAAGCCCGGACGCGATAGCGATCAATTCCAGCTCGTTCACTGCCGCACAGGCAGCTTAGAAATCCGGTCAACGCCACGGGTTGCTACATAATTAGTTCACTGCCGCACAGGCAGCTTAGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : ATTCTGGACCATGCGTTGATGCTATTTGGGGAGCAAAATTGCGAGCGGAAGCGCATTTTGTAACTGACAACAGGGAGAATGGCATCTTTTATTACTGACTTTATGAGTATTAGAGTAGGGTAAATAGCAGGTAGCATATCAAGATATACCCGTCATACTTCAAACTGCATGTATGTTGGCTGCGCTCAATTATCCCGGTCACTTACTGGTGTAAGTGCTTGGGGATTTACTCAGTTGCTGGCTTCCTGCAACTCGAATTACTTTGGGTATAGAGAGAGTTATTTTTTGGAAGAATATCTGCTAATAAAGCGCTAACGGAAAAATAGCGCGGTGGATATCCCGCTAAGGAGTTTTTTGGCTATGGAAAACGCTATTCATTCCTCTGATTTGAAAACGATCCTGCATTCAAAACGATCCAATATTTACTATTTAGAATATTGCCGCGTATTGGTTAATGGTGGGCGAGTTGAATATGTCACCGATGAAGGTAAACAATCCCT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 77158-77485 **** Predicted by CRISPRDetect 2.4 *** >NZ_CTIQ01000005.1 Yersinia pseudotuberculosis strain IP32670, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 77158 28 100.0 32 ............................ AACAACGCGCGAAAGACAAGAAGGCGGCTCTT 77218 28 100.0 32 ............................ CTTCAAAGGACATACCAGACTTGTGGCAAGAT 77278 28 100.0 32 ............................ GATCTCGCCGTCCAATAGCTCGATAATTGAAC 77338 28 100.0 32 ............................ AACTTGAAACCTTCCCAGCAGTGACACTGGAT 77398 28 96.4 32 A........................... TTACACGCTGGACGGCCAGGGAGACGAGAGCT 77458 27 89.3 0 .....................CC.-... | T [77484] ========== ====== ====== ====== ============================ ================================ ================== 6 28 97.6 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GTTATAAGGCAAGCTCACGCTCATCATTAAGTTTATCAATCCGGCACAGTCTCTGTTGCCGGATTTTTTGTATTCAGAAAACCAGGCCAGAGCGTATTGTCGTGCGGCTACAATCTCAATCGTGATTAGGCTAGAAAAATGAATCGAGGTGATGAACTCCAGCAGGCAGACCCTCAACTCGTCGTGGGAAAATACCGGATAGCGGATAATGCCGCCCCTAATTCGCAATAAACGATACCGAGTAACCGTACCCATTAGCCATAGTATTACTTTTTTAGTTATTTAATTTGGCAGGCCAGAAACATGGGCCACGCCACCCCCCCTCCTCAGAAGAGTAATCATTAGGGTTACGTCCCCCCCGATTCTTGTGACCCTCTTTTTTTCACTATGACTAACGTATTGATTTTTATGCTACTCAGGTATTTCACTAAAAAAAGGGTTTTTACGCATTTTGCGCCATTGCTCATTGATAAACATCGGGTTATCCGTATTATCTTACT # Right flank : ATCTCAGCTCTCTGGCGGCGTTTTATCTGCAAATATTAACTCACTAATCCCTTGGCATATTCAAACAACGCTTTTAGCAGCGCAAGTTTCTCTTTATCGTCTTCATACTGGTTATAAAATTGTTCCAGTTGCAAAACATAATCTTGTACCCGCTCAGGGCTAAGCGCTTCACGGCGATGCTGTAACCAACGCTGTTGTTCACTGTTATTCAAGGTATTTGGGTAGTTACGGGCGCGGAAGCGGAATAGCAGGGCCTCCAACCGTGGGTCCTGAAATGTCAAATCCAGTGCTGGCAGATTTTGTGGCTCAGTTTGCTGGATAATCTTCATGGTGGCGCGGTCAGCATCACTGAAAAAGCCGTTATACAACTGTGTATCCACATCATCGGTAACCGCGAATGGCTCAGCTTGTGCAAACAGCGCGACCACTTTTTCACGCACCTGCGGGTTTTGCCGCAACAGTTGCAGATTTTGCAAACAACGCTGGCGATCAATCCCCAA # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.60,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //