Array 1 88850-87486 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIQDF010000026.1 Myxococcus sp. AS-1-15 NODE_26_length_89060_cov_216.642415, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================================================= ================== 88849 29 89.7 42 A.C.......C.................. AACGGTTCAGCTCCGGCGACGGCTTCGGCTCCGGCGACGGGT 88778 29 89.7 44 ......T........A...T......... AACGGTCGCCAACTTCAAGGAGATCTACAGCGACAACTTCATGT 88705 29 100.0 44 ............................. AACGGAGTGAGTGGACGTTGGACAACGTCCGCTGGGACGACAGT 88632 29 100.0 43 ............................. AACGCCGCAGTAACAACGCACATCAATATCACCACGCACAAGT 88560 29 96.6 45 ....................T........ GGTGGAATTGCGCAACCCGCGTCGTCTGCAATAACACGCTGGGGT 88486 29 96.6 44 ......................C...... AACGGAGTCTGGCCCCTATGCGCGCTGCATGAAATGGGAGTTGC 88413 29 96.6 45 ....................T........ GGTGGTTCATCACATACCTCGCTACGAACACCTGCGCGGGTAAGT 88339 29 93.1 27 ......A...............A...... AACGGTGACCGAGGAAGAGAAATGCGG Deletion [88284] 88283 28 93.1 47 ...-................T........ GGCGACCGTGGAGGTCGCAGCCGAAGAGCAGACCATCGAGTTCATGT 88208 29 89.7 46 A............A......T........ GCGGGACTCATCCAGCAGACCAACAACCTGTCCACCACCAACATGT 88133 29 100.0 43 ............................. GGCGGGATGGATAACGTCCTGACAGGGACGGCAAACCTGATGT 88061 29 82.8 40 ..G......A.......G.T.....A... GGCGGCTCTTGGGCGAGCTCTTCACCGTGGCCATACCGGA 87992 29 86.2 44 ......T.T.G...A.............. GTCAGTCGACTTGATGACCGAGGTCCTCGCACAGAAGTTCGAGT 87919 29 82.8 97 ...A...AT..C...T............. AACAGCGAAGAAACTGGGTATCAACGCGCTCCGCACGCTGTGCTCAAGGTCTTCTGGCACGAGCAGCACGACGCGATTACGTGGCTGTGCGGTGCAT 87793 29 86.2 41 .......C..C...AT............. ACCTGCCCCGAGCGCCGACTTCTTCGGCAACGCCGGTTAGT 87723 29 82.8 34 A............TA.T.....A...... AACGGCACGCCGCTTGTCCCTGCGCGTAACAGGC Deletion [87661] 87660 28 75.9 44 A.C..........TA-......A..C... AACAAAGGCGTGCGTCGACGAGTGCACCATGCGGCGGTGATGGT 87588 29 82.8 45 ..G..G.................AAC... AACGGGAGCGAATGCACTACTTCAACATCAGCGACTACGACTTGT 87514 29 86.2 0 A.........C...A..........A... | ========== ====== ====== ====== ============================= ================================================================================================= ================== 19 29 90.0 45 GCTCAACGCCTTCCGGCATCACGGCGAGC # Left flank : CGGGCAGGGCCTTCTCGCTCTCAGGTCTTCTGCGCACACAGAGCCGAACGAGAAGTGCCCCTGCTCCCTCTTCCCGCGCACTTCCCGCCTGCCCGCCCTTCAGCCTGATCGAGAATCACGAACTTCGGTTTAGAACCAGTGGGTCGGACCTGTTCGCACCGTGAAACATGCATCTGTGTGACAGGCCCGCGAGGATAGCCACGGGTCCGA # Right flank : GGAGAGCCCACCCCAGATTCAAACGCCTATTCATCTAACAAAGAGCGTCCCACGAAAACATGGAAGAACGCTGCTCTTCCGTCACCTACTTCCGCAGCAGCCGGTCGCTTACTGGTCGTCACGCCGCATTCGATATACTCCTCAACGTCCTCCATCAGGCGTCATCTACCAGCCCCCTAAGCAACTCCTCGCAACGCGCTTGAAGCTTGGGGCTCTTCACCAACACACGAAGCGCCTGGGCGCACTCCACCCGCACCTCGCGCGGCAGGTCCATCAACTTCTGCATCCACTGCGCGTCGAAGTCCTCGAGCACCTTACGCTGCTCCGTCTTCGCCGCCCGCTGCGCCTCCCCCCAGGCCTTGAACGCATCCCGCGCCGGTGACGGCCGAGACACCGCGCGCGGGGGATTGACCACCACGCTCCCCTCGGGCTCCAACCGCCCGTATCCTGCGGCCGTCTTACCCCCCACGCCCCAGTCACGCAGCGCCTCGCACAACCGG # Questionable array : NO Score: 4.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.50, 5:0, 6:0.25, 7:-0.28, 8:1, 9:0.24, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTCAACGCCTTCCGGCATCACGGCGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.40,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [30-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 1 1775-447 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIQDF010000028.1 Myxococcus sp. AS-1-15 NODE_28_length_68029_cov_214.698846, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 1774 36 91.7 36 ...G..............T........A........ TCCGTTGTTCACGAGCGCCTGGTTGTCGCCTGTGAG A [1770] 1701 36 100.0 35 .................................... CTTCGTAAGGAAAGCTTTTTCAAATTCTCGCTTGA 1630 36 100.0 34 .................................... TTCGGAGCGACGGTCGCCGCGAACACTCCCACTG 1560 36 100.0 35 .................................... TGGACCGCCGTCGAGCAGGCCGTCGCCAACCGCAA 1489 36 100.0 34 .................................... ACGCGTACTTGGACCTCTGCGGCGCTCCGGAGGT 1419 36 100.0 37 .................................... AGGAAGACATCCCCGTGGTGGGTTTCACGTTGGAGTG 1346 36 97.2 33 ...................T................ CGCGCCGGACGGGTCGAGTCCACGAATGCTATC 1277 36 100.0 36 .................................... GCAGGGGCAGAAGTACGTCAACCCTCAGCGCCTCCA 1205 36 100.0 33 .................................... CGAACTGAAGGAGTTGAAGGCCAACCGAAGCGG 1136 36 100.0 36 .................................... CTGCTGGTGCACGCCATCGGCGACGCCGGTGTCGAG 1064 36 100.0 36 .................................... GCGCTTCCGCGCGGAGCTCTTCGTGCAGGCGGCCTA 992 36 97.2 36 ...........T........................ TTCGCGTGTCGCCGTCCGCATCCCTTGGAGGCCAGA 920 36 94.4 35 ...............................GG... CACTCTCTGGCGCATATGATGGATGAGGCAGAGTC 849 36 91.7 36 ..........T....................GG... GAAGTTCACCTCGTTCCTCAGCTCGCGAAACGTGGC 777 36 88.9 39 ....G...T......................G.T.. CGTCGTGGTGAAGAAGGGTGAGAGTGTCACGTTTGAGAA 702 36 91.7 41 T.........T..................A...... CCTCACACGCTGGTCTGGCACGACGTCCTTGACGGTTTCGC 625 36 94.4 36 ...............................GG... CACCGCGTGGGACCTCATGAGCCCCCAGGAGTACGT 553 36 94.4 34 ...............................GG... CGTCCATCCGCTCAAGATCCTTCAGCCTGTTGCG A [519] 482 36 72.2 0 .C.......................A..TCGTTGCT | ========== ====== ====== ====== ==================================== ========================================= ================== 19 36 95.5 36 GTGCTCAACGCCTTCCGGCATCACGGCGAGCAACGG # Left flank : GCGCCGGAGGTCGTGTAGTTGCGGAACGTCCCACCCGCCTTGGCGTGGAGGGCGGTCTGAATCTCCCCCGAGAGCGCGAAGATGGAGTCGCCCAGGAACACGACGTTGTTGTTGTTCGCGTTGGTGATCCACGGGGCGCTCATGAGCTGACCGAGGCCGCAGCCGACGAGCAGCATGGGCGTCGTGATGACGAGGGCTTGTGCCCACCGGGGCAGACGCGCGCGACCAGAGACTTGGAACGCCTTCATAGGGTGCCTTCCCGCCAGCAGGGCTCGCCCGCCGACGTGCCGTTTGGGGATACGTCCGTGACTGCTCCGTCCTCCGGACTTTCCGGATGACGTCCGATTCGCGCACAGGATTGATTCGGAAGTCAAAGCTGAAAAATGCCAACAAGCCGCGAGAGCGGCCCTGTGGAAAATTTCCAGAACCGTTGGGTCGGACCTGTTCGCAGTGTGAAACATGTATCCGTGTGATAGGGCCGCGAGTGGAGCCACGGGTCC # Right flank : TGTCCGCGTTGGTGATGCGCGGGGCGCTCATGAGCGGACCGAGGCCACAGCCGACCAGCAGCATGGGCGTCGTGATGACGAGGGCTTGGCCCACCGGGGCAGACGCGCGCGACCAGAGACTTGGAACGCCTTCATATGGTTCCTTCCCGCCAGCAGGGCTCACCCGCCGACGTGCCGTTGAAGATACGTCCGTGATTGTTCCGCCCTCCGGACTTTCCGGACGACGTCCGTCCGATTCGTGCACAGGATTGATTCAGAAGTCAAAGCTGAAAATTACAAATAAGCCGCAAGGATGGCCCTGCAATAAAGCTCTAAACCAACGATCTCGATTCTCGCACGACGTCAGGAGGCGCGCCTGAGGTCGGCTCGCCGCAGGGATGGACAGGCAGAGCGCTGTGCATTCCGCGCGTCGAGGTAGGCATGTACCCGCACCATGAGCTGGGCCAT # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.75, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCAACGCCTTCCGGCATCACGGCGAGCAACGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [21-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 1 273700-273944 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIQDF010000004.1 Myxococcus sp. AS-1-15 NODE_4_length_685320_cov_187.693814, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================== ================== 273700 32 93.8 37 .......................A...G.... CTCGCCGTCGAGCAACCCGGTTGCGGCTCCGACCCCC 273769 32 100.0 40 ................................ GGGCGCATCCCCGGGCAGCTCCGTTGCATCCTCGAGCCCG 273841 32 100.0 40 ................................ GGGCTCGCCGCCGGCCAGCACCGTTGCATCGCCGAGTCCG 273913 31 87.5 0 .....T..C..T..............-..... | T [273942] ========== ====== ====== ====== ================================ ======================================== ================== 4 32 95.3 39 AGCGCCCGGGACATCGCCTCGGGCGCGAGCCG # Left flank : TCTCCCAGGCCCTGCCTCCGCCCGTGCCTCGCAAGCGAGGGCTGGGGCCGCTGGGCGTGGGGCTCGTCGCCGCGGGCGTGGGCTCCACCGTGGCCGCGCTGGTGACGGTGCTGGCCGTGGGGCTGAGCTCGAGTCGCGCGGTGAATCCCACCGAGGGCGCGACGACGAACGCGGGCGCGACGACGGCGAGCGGCGATACGAACGCCGAGCCGCCCCTGCTCGTGGACCCGGGCAATGCGCGCGCCGTGACGGGACGCGCGGTCGACGAGGGTCCTGGCGGAGAGCACGCTGGCACCGCGAAGGTCGAGCGGACCGCCTCGGACGAAGGCTCGGGCACGAAGCGCCCCTCGTCGCCGGCTGGACTCAGCGCCCGCGACATCGCCGGGAATGGCAACCGGGGCGCACAGCAGGACACCAGCTCGCGGGGTTCGCGGACCGATGAGGTTTCGGACGGACAGGGCGCCGCCGGCTCCGGCAACCCGGTCGCGGCCACCGGCATG # Right flank : GGCCGAGCAGTGCCAGCGCGGACGTGGAGGTGGCGGCCTTCCCCGAATCCACCGCCCCCAAGGCCGCGCCGTCGAAGCCCACGGGCCCCGTGACGGAGGCGGACGTCCTGCGCCTCTACGAAGCCAATGACCTGGCTGGCGCGATGGACCTGGCCAAGGGCGCCCGCCTCAACACGCTCCACGCCCAGCTCGTGCGCTTCGAGGCCACCAGCGCCGAGTCCCGCAAGGCGCTCGCGAAGGGCGACACGGCGCGCGCCATCTCCCAGCTCGCGCTGGCGACGCAGATCGACCAGGAGCTCTCCAAGGGCTGGAGCCTGCAGGGGCCGCAGCTGCGCAAGCAGCTCTCCATCCTGTACGTCCGCTCCGGCGTAGACCACATGAAGGCCCACGACTCGAGCGCCGCGCGGGCCGCCTTCCAGCAGGCCCTCAAGTACGACTCGGGCAACCGCAGCGCCATCGAGGGCCTCAGGCGTCTGGAGACCACCGCCGAGTCAGCCCCC # Questionable array : NO Score: 2.62 # Score Detail : 1:0, 2:0, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGCGCCCGGGACATCGCCTCGGGCGCGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.20,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [23.3-25.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 1 7969-6519 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIQDF010000006.1 Myxococcus sp. AS-1-15 NODE_6_length_535443_cov_205.555106, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 7968 37 100.0 35 ..................................... GGGGCGGCCTGCTGCGCCGACTGGGCCTGCGCGGT 7896 37 100.0 32 ..................................... CGTGGTCCTCGAGGAACGACCAGAAAACGCCA 7827 37 100.0 35 ..................................... AGAACCTGGGGCCGAACCCCATCTACTGCGTGGCC 7755 37 100.0 33 ..................................... GTCACGAGACCAACCGCACCACCCGCGAAGCGT 7685 37 100.0 34 ..................................... TTCACCTACGAGGTCTTCGGCCACAGCATCTTCG 7614 37 100.0 34 ..................................... TCGTTCGGCATGTTTCGTTGCTCCTTCTGCGGCG 7543 37 100.0 34 ..................................... AGCGCTACCCACCGCGCCGGGGGGCCAGCGGTGG 7472 37 100.0 31 ..................................... CCGTGCGCGGTTCCACACTCGCCTCAGACTG 7404 37 97.3 34 ...A................................. TGCCCACGTCAAGCAACTGGACCATGCTCTCGCC 7333 37 100.0 36 ..................................... TGGGTCAAGCAGCGGTGGGGCAACGAGCCGCTCCGC 7260 37 100.0 32 ..................................... TCCGGAGGCTGGCCCTCGCCCACCCAGTGGAC 7191 37 100.0 32 ..................................... CGGGGGATGGTGTATTGGGCGTCCGGCTCGGT 7122 37 100.0 33 ..................................... ATGCCGGTCAAGGTGAAGCTGAACGCGCGCGCG 7052 37 100.0 33 ..................................... TCCACCTTCGCCTTGACCACCGCGCGCATCTGC 6982 37 97.3 36 ..........A.......................... GCATTCAGGGAATGGTTGAGCTGGCCGAGAACGTCG 6909 37 91.9 35 ..........A............A.A........... TGTTCCTCGAACACGACCATCATGGTCTGACCCCA 6837 37 100.0 36 ..................................... TTGCTAAAGAGGGGCTTGCCCGTCTGCGCATGCACC 6764 37 100.0 32 ..................................... TCGCCCAAATGCTCGGCACCGAGAGAAGACCG 6695 37 97.3 34 ....T................................ TGTAGCTCGCCTCGTCACGGGCGTGGATTAGGCG 6624 37 100.0 32 ..................................... AGCTTCGTCACCGTGCCGACCTGCACGCGCTC 6555 37 91.9 0 ..T...............................TG. | ========== ====== ====== ====== ===================================== ==================================== ================== 21 37 98.8 34 GTCGCTCCTCGTGAACGCGAGGGGCGTGGGTTGAAAC # Left flank : CACCGCATGGGGCACGCGCGGCCGGTGCTCGCCGACCGCATCATCGCCACCACCTTCGCCGCCCGCGTGCCCCGGCCTTGAGGAGTGGGGCGCACGGGGGCGCAACCTCGATGATGGGTAGGCCATGGGTGGCGCGGGTCTGGAGTGCTTCCAGGTCGATGGCGTGGCTTTGTGGGGGATGCGCGGGGCGCGTCTGGGCTGTCACGCCAGCAGTGCTGGGCATGGCAGATTCGCGCAGGTGATGAGGGTGCGGACGTCAGGATGGCGGCGACAGAATGCGGGGTCGCGAGATCGGGAGGTGGCTTGCTGGCGGACGGCGAAAGCGCGAACCTGTCCCGGTGTGCGCTCCGTCGAGGGTTCGCGCTCTTTGAAAACTTCAATAGTTCTTGAAGGTTGCGTGGCCGCAGGACTGGCTGCTGTGTGCTGTGGACCTCTTCTGGGATGGGGTTCGCGCGAAGCGGCTGGATTCTCCTGGGATCCTGCTAGGTTGGACGAGCAGG # Right flank : TGGGGACTGCAAGTGCGTCGGCGGCTCCATCGTCCGTTGTCGTGTCTCTGCGGACTTGATGCTCGCGCTCCACCTAGCAGCCCGTCACGTCTCCCCTCAAGTCGAGTCAGGGCCTTGGCGCCGGTGCGCGAGCCTCAGGGGCCTGGAGCACCAGGTCTCCGGGTCGAGGCCCCGCATTGACCTGCCAGCCGGGAGCCAACTCCAACACCCATCCCTCGCCTTCCCAGCGAGCATCTCGGGGCTCCGTGCGCGGGGCGTTCACCGTGGCCGACTTCCAGTCCGAGGACAGGATCACCTCGGACGTCGCCGTGAGCGAACCCCACGCATCCACGATGCGCGCGCCGGGATACACCGTGCCGTGCTCGGCCAGCGGGATGAGCTCACCAGGGTTGAACTGGATGCGCATGCGGACCAGCGGAAGGCGCAACACCGGGCCCTCCACCAGTTTCTTGCGCAGCGCCTCGGCCCGCGCTTCGGCGAGGCGAGCCCGCTCCCGTTCG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCTCGTGAACGCGAGGGGCGTGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCTCGTGACCGCGAGGAGCGTGGGTTGAAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.40,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 337293-342701 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIQDF010000008.1 Myxococcus sp. AS-1-15 NODE_8_length_434065_cov_210.089611, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 337293 37 94.6 34 .................G...........A....... CCGCCAAATCCAGACACGCAGGCGCGTGTCTCTG 337364 37 94.6 33 .................G...........A....... TTCCCGTGCCCGCGCCCACTCATCGCCAACTGG 337434 37 94.6 35 .................G...........A....... AACACTGGCTCGTTCGTGAACATCGCCCAGGCCAC 337506 37 94.6 34 .................G...........A....... TTGTCGCCGGGCACCACCTTGCGAATGAAGACGA 337577 37 94.6 37 .................G...........A....... CCGCGCAGTAGGAAGCTGCCCTCAGGGGGAGGTGCTC 337651 37 94.6 37 .................G...........A....... CTCTACCCACAGATTCAGCATGCCGTTGCCCAGGAGC 337725 37 100.0 34 ..................................... TGGAGATGGAAGAGGAGGAAGCGTGAACTTCATG 337796 37 100.0 33 ..................................... GGGCCGAGGTCGTAGACGCCTCTGCCGGGGCTC 337866 37 100.0 34 ..................................... GCTGGGACGTAGCAGCGCGGAGTGAGCCCCGTCA 337937 37 100.0 32 ..................................... GGGTGTTGCTACGGCGGTGCTGCGACTACGTC 338006 37 100.0 35 ..................................... GCCCACGTCTCGGTGAAGTCGGCCGCGTCGGCCAG 338078 37 100.0 33 ..................................... GATGGGGTCTGGGCGCTCTCCGAGCACGCTGAG 338148 37 100.0 36 ..................................... TTGAGGTTGGCCAGCGTGCGCTCGCTGTCCACGAAG 338221 37 100.0 33 ..................................... ACCTTGACGGCCATGCCCACCGAGAAGGGGCGA 338291 37 100.0 33 ..................................... CCTTTGGCCTCCAGTGCATTTTTCTCAGCCCGG 338361 37 100.0 34 ..................................... CGCCAAATCCACATTGAGCGCTGCGCCCTAAATG 338432 37 100.0 33 ..................................... CTCGTGGTGGGCACTGCGGAGGGCCCGAGTCAG 338502 37 100.0 34 ..................................... GCCCTCGGCGTCCGTCAGCGGGCCGTCAGGCGGC 338573 37 100.0 33 ..................................... TGACGAGGACAGCACCGTCGTCATCAGCCTGCT 338643 37 100.0 34 ..................................... GTCTGCTGCTGCATCTGGGCATTCGCGAGGTTCG 338714 37 100.0 32 ..................................... GGCCTGCCGCACCAGGGCGCGCCTGACGGTGC 338783 37 100.0 32 ..................................... CTTCCCCGCAGTCTCCAGCCTGGCGCGGGGCC 338852 37 100.0 35 ..................................... GTTGTAGAAGTCCTGCGCCATGACGAAGTCCGGGC 338924 37 100.0 32 ..................................... GGCGTGAAACCGGCCTCACGCATGCCGGCCTT 338993 37 100.0 34 ..................................... TCACGCAACATGGGGCGGATGAGGTCCCACGTCC 339064 37 100.0 34 ..................................... CACTCCGGGCAGCGGCGGCGCGTCGCGGCCTTCT 339135 37 100.0 34 ..................................... ACCTCGACGCGGTACAGGGCGTACTTGTCCTTGA 339206 37 100.0 32 ..................................... ATCGCGGGGGACAGCGACTCCACCGCCCGGAA 339275 37 100.0 36 ..................................... TCTGCGGCGCGGGCGCGCGCGTCAGCGATTGAAGTC 339348 37 100.0 32 ..................................... TGGCTCGACACGCTCAGCATGAGCCGCGCTCT 339417 37 100.0 33 ..................................... AAGGCCGGCGACGCCTTCTCCTTCGCGACCACG 339487 37 100.0 34 ..................................... TGCGCCAGAGGTGGAGGAGTTGGTGGACGCGAAG 339558 37 100.0 33 ..................................... CAGACGACGTGCGTTTCGGACTCCGCGCCGTCA 339628 37 100.0 34 ..................................... TCCCCCACCTCGGACAGCGCCGCGCGCAGCGGCA 339699 37 100.0 32 ..................................... TGGAGCTCCGCCCGAGCCGGGCGCGGCACCAT 339768 37 100.0 34 ..................................... ATGAGGTAGCCGGTGAACACCTTCTCCCCGTCCA 339839 37 97.3 32 .............................A....... ACCCGTACATCCACTCGAGGCAGTGCCACGTG 339908 37 100.0 34 ..................................... TCGAGTCCCTCCGGTGACCGCATGGGCCCAGGAA 339979 37 100.0 33 ..................................... CATGCCGCTCGGTCGGGGTAGTCCGCCGCCATC 340049 37 100.0 34 ..................................... AATGATAGGCGCAGCCTCGCGCGTCGCTTGGGCC 340120 37 100.0 33 ..................................... GTCAGCTCGCGCTTGATGTTCATCGCCTCCTGG 340190 37 100.0 33 ..................................... TGTACCACGGGGATGCACAGGCGCGCGGCCTCC 340260 37 100.0 33 ..................................... AGCTGCGCCTCCTGCTTCGCCGCCAGCTTGGGG 340330 37 97.3 33 .G................................... ACCAGCAGAGGTAGAATTCAGGCGAAGTTGAAG 340400 37 100.0 34 ..................................... ATCGGCGGCGTCTACGGCAGCCTCAACCAGCAGG 340471 37 100.0 34 ..................................... AGGGCCTCAAGCTCATCGTCGGTCAGCATCGGAA 340542 37 100.0 33 ..................................... TCAGGCGGGAGGCGCGTCAGTTTCTCGTACAGC 340612 37 100.0 33 ..................................... ACGTGTCACCGGCCGATACGGCGTTGTCGAGAA 340682 37 100.0 34 ..................................... GCGCGCGCGGCCTTGTGCGCCGCGAGGTCCTTCG 340753 37 100.0 35 ..................................... ATGTTGTTCGCACCGGCCGAGGCGGGCGGACGCCT 340825 37 100.0 32 ..................................... GCACCGTCCTCCGCGCCGAGTGTCTCGGCGCG 340894 37 100.0 34 ..................................... CCCGGGCCCGCGTTGCACAAGCTGCGCTCAGGTG 340965 37 100.0 32 ..................................... CAGGAGGAGATTCGCAGCATGCGCCCGGGGCA 341034 37 100.0 33 ..................................... CACTGGTCACGGCCGCCACGCCCAGGTGTCGGC 341104 37 100.0 38 ..................................... CACTCGGCGGGGAAGCGGTCCACGCGCGAAGGTGCGAA 341179 37 100.0 33 ..................................... TTGACCACTTGGCGCGCCTCGACCGCGCCGGAG 341249 37 100.0 35 ..................................... TCCGTCTCCGCTACCACCTCCCCATGCACCATGGT 341321 37 100.0 33 ..................................... TGGTTCGCGGTGCCCACGTCCTTGGCGCCCCGC 341391 37 100.0 33 ..................................... TCAGCGGTCAATGCTCATATCCGGGCGCTGTCC 341461 37 97.3 34 ....................T................ CCATGTCGAATGCGACCAAGCAGTACACGTCCAC 341532 37 100.0 32 ..................................... TCCCCCTCGCCGCACCAGCGATGAAACGTGGT 341601 37 100.0 34 ..................................... ACGTGCTCGGGGCGGTCGAGGGCGCGGAACAGCA 341672 37 100.0 35 ..................................... CAGCGAGTCGGGGCACCTCATGGGCGGCCCCCGCA 341744 37 100.0 37 ..................................... AACGCCGGGGCGACCGAGGCCGACATTTGGCCCGTCA 341818 37 100.0 34 ..................................... TTCTACGTGGCCAAGGCCTCCCGCTCCGAGCGCG 341889 37 100.0 38 ..................................... GATGACGTCGAACGCGGCGTCGCCGGGATCCACCGACA 341964 37 100.0 33 ..................................... GTGACCCCAAGGTCATGGCCGAAATCATCGAGG 342034 37 100.0 32 ..................................... TCTTGCATGCGTCTCTCCCGGCTGACGGTGGC 342103 37 100.0 33 ..................................... GCAATGGCGTCAAGCAACTCGGACTCAATGGGC 342173 37 97.3 35 .......................A............. ACGGACCGCATCCTCGCGGAGAACGCCGGGCTGTC 342245 37 100.0 34 ..................................... CGGTTCCGGGGCCATCTGTCTTTGGCCCGCGTTT 342316 37 100.0 37 ..................................... CTCGATGTGGAGCCAGTCGTGCTGTTGCGTGCGTCGG 342390 37 97.3 32 ....................................T ATCACGGACGCGGGCAACGAAATCCTGGTGAA 342459 37 100.0 31 ..................................... TCCATGTCCAGCCAGAGCGTGAGCTGCACCT 342527 37 100.0 32 ..................................... CAGGCGTCATCGTTCGACACAATCGGCTCGTC 342596 37 100.0 32 ..................................... GGTGCGCCGGCCCGGTGGCACCACCACGAACT 342665 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 77 37 99.4 34 GTCGCTCCTCGTGACCGCGAGGAGCGTGGGTTGAAAC # Left flank : CGGAAGGTCACCGTGCTCGTCTGCTACGACGTCCAGGTGAGTGACCCGACGGGACCCAAGCGGCTCCGGCGGATGGCTCGGATGTGCAAGGACCATGGGGTCCGGGTGCAGTACTCGGTGTTCGAGTGTGTTCTGGAGCCGAAGGACTGGGTCGTGCTGCGCGCACGGCTGCTCTCGGAGATGGATGCGGAGAGCGACAGTCTGCGGTTCTACTTCTTGAGCGAGGATGTCGCTCGGAAGACGGAGCACCATGGCACGCGGATTCCATTGGATGTCGAGGGGCCGCTCATCCTGTGAGCGGCTTGCCTGCCCTGACTGGGGCGCGCGAACCTGTCCCGGTGCGTGCTTCGTCGGAGGTTCGCGCTCTTTGAAATCTCCAATAGTCGTAGGGAGTTATGTCGTGTGGACCGGGAATGTGGACTGGGTGGACTGTCCTGTGGACCCAGGTTCGCGCGGACCGGCCGGATTCCCGAGTGATTGTGGTAGTTTGGACGGGCAGG # Right flank : CCAGCACGCTGGTTAGAATGCCCTGCAGATGGGGTCGCTCTCCGTCACGGCAGAGAGCCTGAGGCGCATGCCTCAACCAGATGATCTAAGGTCCAATGTCGGAGAGGGGATGGCGCGATTCTTCTGGGTAGACGAAGACAACGCGGTCGTGCGCCGGCATGGCGGTGAGGTTCATGGCGGGCGCAAGTGGAAGCTCCCTGGGTTGCTGCGGTGCCCGACGTGTGATGCCACGTGGAGTGGCTCCGGACATTTCTTCCCTGGCGTGGACCTGTCCTCGCTGCCAGAGCGTCGTGAACTCGAGAGGGCGAGGCCCGAGCCTCTTCCCGAGCTCGACCGCTTGCGTGCGCTGGTTCGCCCCTTCACCCCCTCAGGTGCCGCACTGCCTCCCGGAACAGGCTTCGGACCGCTGGAGGGAACGGGATTCGGAAAGCTCCCGGCGTTTGCCTGGGTCGTCGAGGTGCTGCTCGTCCACCAGCAAGCCCTGGAGATGCTCCAGGCGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCTCGTGACCGCGAGGAGCGTGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCTCGTGACCGCGAGGAGCGTGGGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.10,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //