Array 1 3794-169 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHZF010000058.1 Halomonas campaniensis strain 5AG Ga0075189_58, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 3793 33 100.0 35 ................................. ATATGGCCGTTGCCGGCGGAGCCTACGGCGGTCAG 3725 33 100.0 34 ................................. ATCGTTGCGGCGGTCATGCGATCACTCCGGTTTC 3658 33 100.0 35 ................................. TTGCGCCGCTGCTTGGGGCCGTCCTGGTAGAGCAG 3590 33 100.0 36 ................................. CTCCACGCGGTAGCCGAGGTCTTCCAGCGCGCAGGT 3521 33 100.0 34 ................................. AAGGCTTCGCTGCGCGAGATGGCCGAGGCCGGGG 3454 33 100.0 33 ................................. ATCTTCGTCGGCACCTCCAGCCGAGGCAACGAG 3388 33 100.0 35 ................................. ATCGCGAGCGACTACTGGTCGGCCACGGAGTCGGG 3320 33 100.0 36 ................................. CGGCTGTGCGTCTACCTCATCGACCCAGTGGCCGTG 3251 33 100.0 35 ................................. TCTGACGGCAGTGAGAGCTCCGGCAACAAGAACCT 3183 33 100.0 35 ................................. TCCACGTACCGCTGGGCGGCCGTGGCGTAGGTCTC 3115 33 100.0 38 ................................. GCCCATCACCCGGGCCACGTAGTCGATGCCCTGCATCA 3044 33 100.0 33 ................................. ACGCTGCACCTCCTGGGCTGAGTCTCTGGCCTG 2978 33 100.0 33 ................................. ACGTCCTTGAACAGCATCGCGCCAGCGCCAGGC 2912 33 100.0 35 ................................. GAGAGCCAGAACAACCTGCTCGCCGGGCTCGAGGC 2844 33 100.0 34 ................................. ATCTCTGACCCGCTGGTGCTCTGACAACTAGGTG 2777 33 100.0 34 ................................. ACGACCCGACCACCAACCCGCTGCTGAATAGCCC 2710 33 100.0 35 ................................. TTCTCCTCGGTGCTCAGTGAGCTGTCAGCGACCAG 2642 33 100.0 35 ................................. CTGAGCGGCACGCCGACGGCCACGCGCCGCGATGG 2574 33 100.0 35 ................................. GAGCTCGGCGGTCTGGTCGACGACCAGGGCGGCGC 2506 33 100.0 36 ................................. GCCGTCGGTGACGGCCATCGGCTCCGGGGGAGTCAT 2437 33 100.0 36 ................................. GACGCCCATGTCGGCGGCAACCGCAACAACGGCGGC 2368 33 100.0 36 ................................. GTCGCGCTGTGCGAGCCGCGCCCGGAGGACCTGGGG 2299 33 100.0 37 ................................. GCCATGGCCACCAGCCTCCTGCCCTCACGCCTGCCCA 2229 33 100.0 34 ................................. CATGCGATCGGCGAAGGCGCGCAGGGCCTCGCCG 2162 33 100.0 35 ................................. AGCCCGTCGATCACCTCGGTGAGGTTGCCGGTCTC 2094 33 100.0 34 ................................. GACATCGACAACAAGCTGAAGGCGCTGCTGGATG 2027 33 100.0 35 ................................. ACGCAAGACCAGTGGCACGCGCTGCGCCCGCTGCT 1959 33 100.0 34 ................................. TTCGCCAGTGCCTTGCTTGACAATGCCGTGTAGC 1892 33 100.0 35 ................................. AGTGACGTGACCGGAATACCGAAGAACACGCTGAT 1824 33 100.0 35 ................................. ACCTGATTTCTGGCGTACCAGGGGCGGGTAAAACC 1756 33 100.0 35 ................................. ATGTCTGCTCTCCCGGTGGTGTGCGTCTTGCGTAC 1688 33 100.0 35 ................................. AACTCGAGGCGGCACTTCGTAACTACATCGACATC 1620 33 100.0 36 ................................. CTCAGCGAGTTGGAGGAAGAGCTGCCCGAAGTGGAG 1551 33 100.0 35 ................................. GACAGCAGGGCGGACTATGACGCGACCCGCGATGG 1483 33 100.0 35 ................................. AAGGTGAAGGTCGGCAACCCTGCGCGGAAGCTGGT 1415 33 100.0 36 ................................. CTGTCCAGCACGATCTTGTAGGACGCGGCCTGGACT 1346 33 100.0 34 ................................. ACACCCTCCTATATCTCGGCAGCCCATCTCTCAC 1279 33 100.0 34 ................................. AGCTTGCCCAGCAGCTCGCTGGCCCCCTGGTCGC 1212 33 100.0 34 ................................. GAACCCGGCAAGAAGTGGGTGGGCTTCCGCGAGA 1145 33 100.0 34 ................................. ATTGGCCAGGACTTCAACGTAGGCGCGATGGCCA 1078 33 100.0 36 ................................. GACCAGCTCGATGAAGCGCAGCAGGCGCTCTAAGAC 1009 33 100.0 33 ................................. CTCGAGGACACCATGGATGCCTGGCAGCGGGAG 943 33 100.0 33 ................................. CACTCCTCCGGCGTCAGCGTCAGGCCATGCCAC 877 33 100.0 36 ................................. ACCATGCCCCTCTGCCGCTATCACCATGGCGAGGTG 808 33 100.0 33 ................................. GCCAGTAGCGGGCAGCAGTATGGGCAGCCGCAG 742 33 100.0 33 ................................. ACCCATGACGGCGGCGACACATCGAAATGGCGG 676 33 100.0 35 ................................. GCCAAGGGCACCGACCTGGAAGCCCGCATCAGCGC 608 33 100.0 35 ................................. CAGGCCGAAGGCATCACCACCACATCCGTCGTCAT 540 33 100.0 35 ................................. CATCAGGTGGTGAACCATCGTGCGTGCTGTCTGCT 472 33 100.0 34 ................................. TCGCCCTGGAAGCGCACATCCGGGCCGTTGTCGC 405 33 100.0 35 ................................. ATCGGCGGCATCCGCTGGAATCGCCTCTACATGAC 337 33 100.0 35 ................................. ATCTGCTGGCCGGCGTCGTCGGACCAGTCATCCAT 269 33 93.9 35 ...........TG.................... AAGTGGATTATAGGTATGATTTTCGGCAACTCCGA 201 33 81.8 0 .......T...TCT........T..G....... | ========== ====== ====== ====== ================================= ====================================== ================== 54 33 99.5 35 GTCGCGCCCCGCACGGGGCGCGCGGATAGAAAC # Left flank : TCGGAGTACCGACGTCGCGTCTTCTTGGTCATGAACACCTCCAATGCCTCCAGTATGAGGCTTACCGGGGTGTCCGCTCCAATTAGACCAGTTCAA # Right flank : CGGTGTTATTTGTGACAGAACCACGCCTTTACGAAATGCCGCCCAGGAGCCCTGCGGTCTCCATTCGCCGGGCAAAGCCCAGCTCCTGGTATGGATTGACCCGTCAAGGGGTCGGTTGTCTCTGTTGCATGTGGTCATCCTCAATGCCTTCGGATCAGGAAGCGAGGGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGCACGGGGCGCGCGGATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCGCTCGGGGCGTGCGGATAGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.60,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1189-130 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHZF010000061.1 Halomonas campaniensis strain 5AG Ga0075189_61, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 1188 33 100.0 36 ................................. CGCGTGGCGTTTCGCATCCTCAAGACCCTGACAACT 1119 33 100.0 36 ................................. ACTTGCAGGCTATTGGTCGTGCGCTGCGCCCGGCGC 1050 33 100.0 37 ................................. AGGTTGTTGATGGCGAGTTGCAGAAAATCGACGTGGA 980 33 100.0 35 ................................. TTGTCTCCTGAGAACAGGGGCGGCGGACCGCCCCG 912 33 100.0 35 ................................. TCGGATGGCGCACCCTATCCACCCCTCAAGCCCTG 844 33 100.0 35 ................................. ATCACCCGCATGGCTGACGACGCGGTGCAGGACAT 776 33 100.0 35 ................................. TCGCAAAAGGATATCGCCAGCGGCGCCATTGGCAC 708 33 100.0 37 ................................. CCCGAGATCGATGGCCTGCTAGACGAGTCTGGCACAC 638 33 100.0 36 ................................. TCAGGCAGCGGGGTGGAAAAAATGACCACACAAGAC 569 33 100.0 36 ................................. AAACGACTACGCCAACTTGCCGGCCACACGCAGAAA 500 33 100.0 35 ................................. ATCGCCACAAAATCCATATCAGCGCCCTCAGAACC 432 33 100.0 34 ................................. TGGGCGAGATAGTGGTGCCCTTCGGCTACTGCAC 365 33 100.0 35 ................................. ATCGGAAGCCAAGGGGTGCGCAAGGTGGCGTATCA 297 33 100.0 34 ................................. CAGATAACAAAAACAATCAGACAGATATTCCGAC 230 33 100.0 35 ................................. ACCGTCACCGCCCAAACCCGCATGGTCGGCAACAG 162 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ===================================== ================== 16 33 100.0 35 GTCGCGCCCCGCACGGGGCGCGCGGATAGAAAC # Left flank : TCGGTCAGGAGAGTACAGCGATGATGGTCTTGGTCAGCTACGATGTCAGCACCTCATCTGAAGGTGGCGAGGGTCGGCTGCGTCGCGTCGCGAAAGCCTGCCGTGATGTCGGGCAGCGTGTGCAGTTCTCGGTATTCGAGATTGAGGTCGATCCCGACCAATGGGTGCGCCTGCGGCAGCGGTTGATCGACCTAATCGACGAGGAGGTCGACAGCCTGCGCTTCTATTTTTTGGGTCGCAATTGGAAGAACCGCATTGAACATATCGGTGCCAAGCCATCACTCGATCTAAAAGGTCCTCTCGTTTTCTGATTCCACACTTTTTCGCGAACACCAAGTGTCCGGCTTTTCCCCGGCGGGTTCGCAGTTCTTTAAAATCATGATATTAAATACTTTTTGTCGATTTCGGCGCGCCAATCAGTGCTGCTCCAGAGAAAAAGCGGAGGTATCACTGGATGCCGCCCATTTTGATCGGCATTTTCAATGCGTTATAAAGGGGCA # Right flank : CCACCTCTACGAGCGCACCGCCGCCGGCCGGCAGGTGTTCTGGTCAAGTCGTAGCGGACACTTTTATTAAGCTGCTTCCGCGATTTTCTCGATCTCCCTCGGCGCGTGGTAGCCAAGGGTCGAGTGGAGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGCACGGGGCGCGCGGATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCGCTCGGGGCGTGCGGATAGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.60,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //