Array 1 32-1948 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVXM01000144.1 Klebsiella pneumoniae strain 1239_KPNE 539_6144_74088, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 32 29 100.0 32 ............................. GCGAGCTAATGCCATACCGCTGTTGTAACGAT 93 29 100.0 32 ............................. GACCAGAAAGCGTGGGCGCTTTTCCGCTCGTT 154 29 100.0 32 ............................. CCCGCCGGGATGGATTTAACCCCGCTCTTTTC 215 29 96.6 32 ............................A CACTGGCAACCCACACAGAGCGGGTGCCTCCC 276 29 100.0 32 ............................. GCTGATTTAATTGAGTCGTGGACGCCCCCTGA 337 29 100.0 32 ............................. TTGGCGGCCTGCCGGCGGTTTACGCGGCGGGC 398 29 100.0 32 ............................. GTGTATAGCGAAGTGAAGCAAAAAATGGTTAA 459 29 100.0 32 ............................. CAATCGTAATTTCCAGTCAAGGCGGCTTTACG 520 29 100.0 32 ............................. CGGGGATCGAGGATTTCCGTTTTCACGACCTC 581 29 100.0 32 ............................. GCTACGGTCAGCGCAGGTGATGGCTACCCAGT 642 29 100.0 32 ............................. TGGAGTCTGGTGCATTTGACGGCGCGGTATTA 703 29 100.0 32 ............................. ATCTTCGTCATTGCGATACATACTCACTGCCT 764 29 100.0 32 ............................. CCAGCGGATATGCTCCACGACATGATCAGCGC 825 29 100.0 32 ............................. TAAAATCGATACTTCATTCGCTGCCAATAAGC 886 29 100.0 32 ............................. CCATCAATTTCCGACGTTTTATAACGTCCCTG 947 29 100.0 32 ............................. ACCAGATAGAGATCCACATTGAGATTAACCCG 1008 29 96.6 32 ............................A CGCGGAACCGTAATTCATGCATAAAATTTTTC 1069 29 100.0 32 ............................. GGAATGGGAGACTGGCGTTTCATGATTAGTGA 1130 29 100.0 32 ............................. CGCCCACGCTTTCTGGTCCATCACAGCGATAT 1191 29 100.0 32 ............................. TTGCGCTCGGCGGCGCTGTTTCAACCGCCAGA 1252 29 100.0 32 ............................. GCGGCGGGTTTATGGGGAAAGACTGGGACAGT 1313 29 100.0 32 ............................. AACTCTGGCCCCTGGCGCGGCGCCAGGATATC 1374 29 100.0 32 ............................. CAGCCAGCCATCAGCCGTTGAGTCGATGCTGG 1435 29 100.0 32 ............................. GGCAGTCCAGTTATGGTTCGGGTCCGCTGTGG 1496 29 100.0 32 ............................. GGGCTCAAGGCCGTTATTTTCTACGTGTTGAA 1557 29 100.0 32 ............................. GATGCCAAAAAACTGTTTGCGTTTGCGTGGGC 1618 29 100.0 32 ............................. CCGCAAGCCGTATCAACGAATTACTGCTCGAA 1679 29 100.0 32 ............................. CCCCCCACTCGGTACGCATCATGATATTGAGC 1740 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 1801 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 1862 29 100.0 29 ............................. GGGGTCACTTGGGTGAAACTGAACTAACT 1920 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================ ================== 32 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTTACATCTCCCCCAGGAGACCTTGGGGGAAG # Right flank : CGTCCACTAACGTTATCGATCCTGAGGGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTGGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATATAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 346-12 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVXM01000008.1 Klebsiella pneumoniae strain 1239_KPNE 26_55395_644481, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 345 29 100.0 32 ............................. ACAGAAACCAGCAGCGCTATAACCTTGAGGGG 284 29 100.0 32 ............................. ACTGCGATTCGTTGACGATTATTCCTCCGCGA 223 29 100.0 32 ............................. ACCCAGCAGCGTCTGCAGGACTTCGCGGGGAT 162 29 100.0 32 ............................. GCTCGCAAGTTACATCGCTGCTGTGAGTGTCA 101 29 100.0 32 ............................. GTTTCGCACTCGCCGTTCTGACTGCTGCGCCA 40 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCTGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : GGATCTCGATGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [10.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 12-729 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVXM01000148.1 Klebsiella pneumoniae strain 1239_KPNE 558_740_9256, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================== ================== 12 29 100.0 32 ............................. TCATAGCCGCCGCCCATGCAACGCGCTATCAG 73 29 100.0 32 ............................. CTGGCGATCATTAACGAGCCGCTGGGTAAAGA 134 29 100.0 32 ............................. CCGCTAAAAGTACCTGTTGTCCCACCAATACC 195 29 100.0 32 ............................. CCCGCGGGGATCTGATGATCCTGGGCGGAAAC 256 29 100.0 32 ............................. GTGTGAGAGCAACCACAGCAATGACGAAGAGT 317 29 100.0 50 ............................. CTGAACGGGGATAAACCGTATCGCATCCGTGAACTGCCGGTGCTCCAGAA 396 29 100.0 32 ............................. AGCGCCGCTGGTGATTCTGGCGAAGAGGACTT 457 29 100.0 32 ............................. GGTTTAACCGACATTCTCTCGCCCGCAGTAAT 518 29 100.0 32 ............................. AAACGATAAGGCGTCGGTTACGTGAGTTTTGA 579 29 100.0 32 ............................. CGCCGATCGTGTTCAGTAGCAACGGGTATGCC 640 29 96.6 32 ............................T TCGCTGTATTCACTCACCAGCTGGCTGCGCGG 701 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================================== ================== 12 29 99.7 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ATTCAGTGTATG # Right flank : GATCTCGATGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [13.3-10.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //