Array 1 156253-164325 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPEY01000005.1 Halomonas boliviensis LC1 scaffold_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 156253 28 100.0 32 ............................ GCAGCCTACAAAAGGTGCTTCCACGCATCACC 156313 28 100.0 32 ............................ TTTGAAGACCAGCTCCCCTACATACCCCATCC 156373 28 100.0 32 ............................ AACGATGAAAAAGAGCAGCAACGCCACTACAG 156433 28 100.0 32 ............................ AGGAGCCAGACAACTCGCTGCGGCTTCAAGGT 156493 28 100.0 32 ............................ AAACAGAGCGCACTACTTCTGTTCCCCTGCTT 156553 28 100.0 33 ............................ CCTGACCAGCCGCTTCGATCACTACGGCCCGCT 156614 28 100.0 32 ............................ AACAACGGCAATAAGTATCAATAACCATACAA 156674 28 100.0 32 ............................ ATTAAACACGGTTACCCCTTGCTCACGCAGGC 156734 28 100.0 32 ............................ CAAGGCGATAGCGTGCCGATGCCGGTTACGGC 156794 28 100.0 32 ............................ AGTGATAGATCGGAGGCAGTTTCTAACGTGGT 156854 28 100.0 32 ............................ ACCTGAAAGAAGCGGAGGCCGATGTTTTCGAG 156914 28 100.0 32 ............................ TGACTCACCATAGTCATCACCTGTATTTTCTT 156974 28 100.0 32 ............................ ATTGTGCCCCATCGCGCCCCGCGCACCGCCCT 157034 28 100.0 32 ............................ ATTGGATAGCCTCCAGGGTTTCCAGGGTTTCA 157094 28 100.0 32 ............................ TAGACGCCCTGGTATTCGACGCCGTAAACGAA 157154 28 100.0 32 ............................ CCTTTTTTAATGATTTCTTCGCACAAGTTGGC 157214 28 100.0 32 ............................ CGGCTGCCACCGAGTACGATGGCGAGCAGTTA 157274 28 100.0 32 ............................ TAGCGCATTTATGCCGCCCTCAATAAGCTCTT 157334 28 100.0 32 ............................ ACGGGGAATTCGGACCATGTTTTGCGGCAAAT 157394 28 100.0 32 ............................ ATATCGGCAACGTCGGTTGGCATTTCAGCGTA 157454 28 100.0 32 ............................ ATTATGAGCGGCATAGAGCAGGTTGTTGGCGG 157514 28 100.0 32 ............................ AGTGGAGCCAATCGCTAGCTGCCAGAAGGCGT 157574 28 100.0 32 ............................ CGGCGCAGCTACCCTGGTACACCCCTATTTAG 157634 28 100.0 32 ............................ ATCCGGTAGCCGTCGGGTACTGACTGGGTCTG 157694 28 100.0 32 ............................ AGCCGCTGGGAGGGCTTAACCAGTTGGCTTTC 157754 28 100.0 32 ............................ TTGCTCGGCGTGGTGCCGTCGATTTCAGCGGT 157814 28 100.0 32 ............................ AGTCCGCACCCATGGCCGCAATGGCGGCATCT 157874 28 100.0 32 ............................ ACAGCGACACCGCGACGATCGGCAACGGTCGC 157934 28 100.0 32 ............................ TCTCATAAAGCTTGTCATTCACCGCATCGGAG 157994 28 100.0 32 ............................ AAACAGCGAATTCCACGCGCCACCGAGGATGT 158054 28 100.0 32 ............................ ATAAGGGTGGGCATTGGACGCAGAAAGACCAG 158114 28 100.0 32 ............................ ACCGGCTTCCTGTATTTTGTGTAAGAAACTGT 158174 28 100.0 32 ............................ AGTAGGGGCTTTCCTTTGTGACGGTGAATCCT 158234 28 100.0 32 ............................ AATGGTTGCCTTTTCAAGCGGTGTCGTTGTTC 158294 28 100.0 32 ............................ TTGGCCCCTGGCGGGCAGTACACACACCTCGC 158354 28 100.0 32 ............................ TTATTGTCAGCTTGTTACAGAGCGCGGGGTAA 158414 28 100.0 33 ............................ CGAGGCAGCCCAAGCAGCCAAAAAGCCCTCAAC 158475 28 100.0 33 ............................ CAAACTGAGCGCACTACCTCCGTTCCCCTGCTC 158536 28 100.0 32 ............................ AGTCACACGACCAGTGACCACGGGCACCACTT 158596 28 100.0 33 ............................ CTGACCTCGCTCAGCGCGGACATCCCTAACTTG 158657 28 100.0 33 ............................ CTGGTCAACCTTTACCGCGTAGTGCAGAACCAC 158718 28 100.0 32 ............................ AAAGCGGTCGCGGTCGTTAAAGCGGCCACGGG 158778 28 100.0 32 ............................ AGAAATAACGTTATCTGCACTCAATGCTCCGC 158838 28 100.0 32 ............................ AAAATATCCAGCCCGTTAACGGCATTGCACCC 158898 28 100.0 32 ............................ TCACGGTAAGCAGATATAAAAAAGCCCCAGCG 158958 28 100.0 32 ............................ TCAACGCGCTCGTCACCGTTGGCGAAGAACAC 159018 28 100.0 32 ............................ AGCCCACGGAGCCACGCTGACCGAGTGGATCA 159078 28 100.0 32 ............................ TTCCTAGAGCTGTGCCAACGGCTACGCCAAGA 159138 28 100.0 32 ............................ ACAGGGATGGACGTTACTGCGCAGTTTAACGC 159198 28 100.0 32 ............................ GTTTATCGTAACAAAGGCCCGTCTTCTACTCA 159258 28 100.0 32 ............................ ATAATTAAAACCATCAATATTTTTAGCGTAAT 159318 28 100.0 32 ............................ AACAGCAACTAAGCCAGACTCCACACCACTAA 159378 28 100.0 32 ............................ TTATTAGAAGATGAATCAAAAGCAGCAATACC 159438 28 100.0 32 ............................ ATTAAATCGGAAGCACGAACATTAGAAAAAGA 159498 28 100.0 32 ............................ TCTCGCCGCCCCTGATAAGCACCCAAGTAGAT 159558 28 100.0 32 ............................ AAAGTATACCGCTAGTTGGATGAGCAAGCCAG 159618 28 100.0 32 ............................ AATACAGGGTGCGGGCAGTCATGCGCGGGGAG 159678 28 100.0 32 ............................ GGTACCGCCGCTAGAAAACCTCATGTTCCAGC 159738 28 100.0 32 ............................ TAGCCGAACGCTTCGACGCCGTGGCCACCGTC 159798 28 100.0 32 ............................ TGCAGTTACTACAAGCTGACGGTAGACGGCGA 159858 28 100.0 32 ............................ GCGATCAACGTCACCGTCGAAGAAAAGCGCAT 159918 28 100.0 32 ............................ AATACAATCACCGCTTTCATGGCTGATAAGGT 159978 28 100.0 32 ............................ ATATCAAGAGCGCGAAAGCGAAGTGCAGGGTT 160038 28 100.0 32 ............................ ATTTTGACAGCTAGCGCGTTCGGTCTAACACA 160098 28 100.0 32 ............................ GCTCGATGATAGCGCTGAGCATGTGCGCGTTC 160158 28 100.0 32 ............................ AAGGCGGCGAGCGATGCGGTTCCGGCGGCTGC 160218 28 100.0 32 ............................ GATAACGGCGGTGTTGATAATGCGAATGGGGC 160278 28 100.0 32 ............................ TGGCAGCGTCATCGAATGGCGCTCCGAGACCC 160338 28 100.0 32 ............................ CGCAACGCAGGAGGTGGCATTGGAGGCTTCCG 160398 28 100.0 33 ............................ ATCATCACGTTCATAATTACTCTCTCATAAAGG 160459 28 100.0 32 ............................ CGAAAAAGCTGCAAGTCCTAGCGATGCGATTG 160519 28 100.0 32 ............................ AGCCCGCCGTAAGTGTCGGCAAGCTTCTTCAA 160579 28 100.0 32 ............................ CCCATGTCTTCCAGATATGGCGCAGCGCCGCT 160639 28 100.0 32 ............................ TCGTCAGTCCAGTAAACGTGCCCACGATAGTC 160699 28 100.0 32 ............................ AAATCGACTCGCTAACCCACCTTTCTATGACT 160759 28 100.0 32 ............................ GCGCAACAACGCCGCCCACTGGCTAACCAAAA 160819 28 100.0 32 ............................ AGCAGGTGTGCCAGCAGATTTAAGATGATTTC 160879 28 100.0 32 ............................ GATGAAGCGGTGCCCAAAGATACCGATGGGAA 160939 28 100.0 32 ............................ TAAGCCTTTCCACGACCACTTGCCATTGGGAC 160999 28 100.0 32 ............................ TCTGTGGCATGGCATGTGGCATCCATTCCAGC 161059 28 100.0 32 ............................ ACTGCATCATGGCGCGCCGTTTTTCAATGTAC 161119 28 100.0 32 ............................ ATGAAAGGCGTACCGATGCCAGCAATTAAAGA 161179 28 100.0 32 ............................ TAGTCGTACAATTATCAATAGCAACATCAACA 161239 28 100.0 32 ............................ TTAACAAGCCGCTGTCGCCGCCCGGTCAGCCG 161299 28 100.0 32 ............................ GTATGCGTCGAGGTCGATGGGCGGCTGGGTGT 161359 28 100.0 32 ............................ GCTTGAGTGCATAGCCCTCATATCCCTTACCT 161419 28 100.0 32 ............................ AGATATGAAATCAGAGATATTGTCTATCCTAA 161479 28 100.0 32 ............................ GTGCTGGCCATGACACTTACAGGCTCTGACAC 161539 28 100.0 32 ............................ CATTCCATTGGCTCCGATACCAGCAGCACGAC 161599 28 100.0 32 ............................ TGGGTGGTTGGCTGTGTGCACGGCAATAGCGG 161659 28 100.0 32 ............................ GGCAACCACTGACTTTAGGGTTCGACTCCCTT 161719 28 96.4 32 ......................C..... CGTGACCTGTCAGTGATGGGCAGGCTAAAGGC 161779 28 96.4 32 ......................C..... TGTTCGACCTTGATCAATTGCGCTTGGAGTAC 161839 28 96.4 32 ......................C..... GCAAAGACAGGCTTGAATTCGACGCGGGTTGG 161899 28 96.4 32 ......................C..... GCTCGCACGATTACAGCATCACGGTGCGCGGA 161959 28 96.4 32 ......................C..... CGGGGCTTTTTGCTTTCCGATATATGCCCGCC 162019 28 96.4 32 ......................C..... TGCTCAATTGGCAAAACATCGCATTGAGCGAT 162079 28 96.4 32 ......................C..... TGCTCAATTGGCAAAACATCGCATTGAGCGAT 162139 28 96.4 32 ......................C..... AGTGATGGCCGTTTTATGCGTTTTGTAGCGCC 162199 28 96.4 32 ......................C..... AACCAGGCGGGAAGGATCGAAGCGATGCAAGC 162259 28 96.4 32 ......................C..... TACGTCATCGTTGATATCTGCCTGCGCATGCT 162319 28 96.4 32 ......................C..... TTTGCCGACGTACAGCGGCGTCTTAGTGGTGT 162379 28 96.4 32 ......................C..... TTCACTTTCTTGTTGAATTGTTTGTTGGTCAT 162439 28 96.4 32 ......................C..... GGATGGAGCTTCGCCTGATTGCTGCTTATGGC 162499 28 96.4 32 ......................C..... ATTGCTCGGTTTGCATTTCCAAGAACCGAAGG 162559 28 96.4 32 ......................C..... ACAAAGGCTTCCGTACCGGATGCAGCCCGCTC 162619 28 92.9 32 ........T.............C..... ATTATCAACACCCCGTAAGCGCTCTACGATCA 162679 28 96.4 32 ......................C..... TGCGCGTCCCATGCTTCCACGGTTAACCAGAA 162739 28 96.4 32 ......................C..... TTGGCGAGCAAGCAAAAGGCACGCTTGCAGGA 162799 28 96.4 32 ......................C..... AGGCTGAGCTTCGTCCGCCTCTATGCGCACGA 162859 28 96.4 32 ......................C..... ATGCGGCGCATCCAGTAGCTGCTCCAGGTGAC 162919 28 100.0 32 ............................ AATAGCCCGCTTGAAATGTACTCCATGATGGC 162979 28 96.4 32 ..T......................... TAAGGGCGCATTTGCTCGCCAGTGTTCCCGAA 163039 28 100.0 32 ............................ TTCCGGTCGTGTTGGTCGGCGTGGCCAAGGAC 163099 28 96.4 32 ......................C..... TCAGTTTTAGCGGCACTAATTGTCTTCCGTTT 163159 28 96.4 32 ......................C..... GTGTGGAGCCAGTGCCATTTCTCTAGCGACAA 163219 28 96.4 32 ......................C..... TGCCCCAAACGCACACAGTTTTCGACGATGGC 163279 28 96.4 32 ......................C..... CAATTTTCAGCCAAGTAAACGGGTACTCCTTC 163339 28 96.4 32 ......................C..... GGAAACGAATAGCGGTGATTCAGGGTCAAGCC 163399 28 96.4 32 ......................C..... TGGCGAGGGAGATAAAAGGGAGATGGCAGGCC 163459 27 92.9 32 .....-................C..... CCAAAGCGATTTAGTCGCGCGGCTTGAGCTGA 163518 28 96.4 32 ......................C..... TGCTTGATTAGACGCCTGCTGCGGATGCCATC 163578 28 96.4 32 ......................C..... AACGTACCCGCCAACGCCTAGCGTCATTAGAT 163638 28 96.4 32 ......................C..... GCCGCGGCCATCACGGTATTAGCGCCCCAGTA 163698 28 96.4 32 ......................C..... CACTCGCCGTAGCGCGTGATATTGTCGTAGAG 163758 28 100.0 32 ............................ TGAAAGGGCCGATGAGTGAGACGTGATTGATC 163818 28 92.9 32 ...........A..........C..... AGATATGCGGGCGGTTCGCGGCGTTGGTGGGG 163878 28 96.4 32 ......................C..... ATGCGGGTGAAGCACGGCGGGCGGATCTACAA 163938 28 96.4 32 ......................C..... TGAAGAAGACGCAGAGTGGGCGCTAAAGGATC 163998 28 96.4 32 ......................C..... TCAATGAACAAGGCAAGGCCGGTGCCTTCACG 164058 28 96.4 32 ......................C..... TCGCCAAAAATAACGTTGTAGAAATTCATTAA 164118 28 96.4 32 ......................C..... ACGTGCCGCCGGCGGGAAATTGACCCTTAAAA 164178 28 96.4 32 ......................C..... ACCGGGCGCTGTGGGCATTTGACCAGGGCCAC 164238 28 100.0 32 ............................ AAGCGATGCCCGGCATCGCCGTTGTGACCGGA 164298 28 92.9 0 ......................C....T | ========== ====== ====== ====== ============================ ================================= ================== 135 28 98.8 32 GTGCGCTGCCGCCCAGGCAGCTTAGAAA # Left flank : CACGCTTGCAGCAGCTAATGAGTGCGGACTGGCTAACGGGCATGCGCGATCACACCCAGGTGAGCGAGGTGCTTGCGGTGCCTGCGGGTGCTCAGCATATCAACGTGGCGCGCAAGCAGTTCAATACGGGAAACCCAAGCCGTGCCAAGCGCTACGCCAAGCGGCATGACATTTCGGAAGACGAAGCGCAGCAGATTTATGCAAAGCTAGCGGCGCGGCGCATTGAGCTACCCTTCGTGCAAATAAATAGCCGCTCCACCCAGCAGCGCTTTAGCCTGTTTATTGAACATGGCAAACCGACCGCTTCTGCCACGGAGGGCACGTTTAGCCATTACGGCCTAAGCCCCAACGCAACGGTGCCCTGGTTTTGACCCTTTTTTTCAGCGATAAAATAGGCCACTAATAATCAACCACTTAGCGGTATCGCTCAAAAAAGGGTGATACCGCTTTTTTCGGCTAAAGCTCTTTAACAATCAGCACATTAATTTTGATAAGCTCTA # Right flank : TAGGTTGGGGAGTTCGAGTCTCCCCACCCGGACTGTGTAAGGGATGTGCCTTGGCATTAATGCGCTTGTGCCGATTGGCACTTCAACCTCACAAAAAAGCCACCGCGTCGGTGGCTGTGACTGCTGAATTTCGATCAATGCTAGGCGTTAATCTTCTTGCGGCGGTGCTTCTAGGGCGCGTTTGTCGTCGGGTACTCGGACGATATGGCCGACTTCCAGCTTGTTATGGCTTTGGTGGCGGCCGCCTTTGGTGTCAATGATCGCGGCGACTTCGCCAATGCTGACCGCGTCGTCTTCTCGGTAGGCTTCTACTTTGACGCGCACCATGACGCCTTGGTAGCGGGCGGAAATAATGTCGCCTGGGTCGGGTTGGCCGCTTTGATCCGGGTGTTTTTTAAAGTACTGCATAACACTGGTGTTGCCGGGTTCGTCCCATTCGATATGCTGATGCATCGTTGTCTTCCTTGTTTAAATAAGAGTGCCATGATGAGTATGGCTTA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCGCTGCCGCCCAGGCAGCTTAGAAA # Alternate repeat : GTGCGCTGCCGCCCAGGCAGCTCAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCGCTGCCGCCCAGGCAGCTCAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //