Array 1 198904-199297 **** Predicted by CRISPRDetect 2.4 *** >NZ_UJBD01000003.1 Klebsiella pneumoniae strain EuSCAPE_UK105, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 198904 28 100.0 33 ............................ CGCCTGCAGGATGCCTGCCGTCTCACCCCTTAT 198965 28 100.0 33 ............................ CGATATTTACCGGGATTTCAGCCAGCACGCTCG 199026 28 100.0 33 ............................ CGAGCTCATCGCCTCCCTGGAGACGGCGGGCGA 199087 28 100.0 33 ............................ CTGTTTCATTCGCTCCGATGGCTCGATCTCCGC 199148 28 100.0 33 ............................ TTTTCGAACGTCATCGACGGCTTTTAGCATTTA 199209 28 96.4 33 ..................A......... CATTGGCTGTGGCGCCTGGACAATCGGCAAAGG 199270 28 85.7 0 .C....T.............A......T | ========== ====== ====== ====== ============================ ================================= ================== 7 28 97.4 33 GTCTTCCCCACATGCGTGGGGGTGTTTC # Left flank : GTTAGCGTTGGCGAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGACTTGACGGCGCCGCGCAGGATAATAGCCTCCAGCTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGCAGTAACTTTGCGAAGCCACGGAAGGCAAGCGCCAGGATGACGCGCTACGTTCTGGGGATGACAAAAGCGTTTTACCCCCGGCTGCGGGCCGGGCAGGCCAGTAGGGTAGACCGGTCCAGGTCAGCAGCAAATCGACGGTGGTGATATGGGGACATACTTTTTCGTTTGATAATGTTGATGCTGATGCGGAAACCCTGCGGAGTGCAATTATCGTAAATCTGGCGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : TCGCCTTTCAAGTGACGACAAGTCACGTCTGTGCGCATTTCTCAGATGAAAGGGGATTCCTGACGTAGAGGCATCAATGCCGTGACATAGTTATCCTTAATGTACATCAATGTCTTCGAAATTTCGTTTGGCCAGCACAGTCTCATATGTTTTTTGTATGATTTTACTTATAAATATTCGTGAACTATGTTTGTCCTATACTTTCTTTAGGGGCATCTAAATCATTCGAGTTTATTACTCGTCTGGAGATATTGTTCTTCATATTAATTATTTATAGCTTTTTATATTATTATTTTTGGCTTTTATCTTTAATTCAGTGTGTTGTGGATATTTTTGATTTTATAAAAAGTTATTTATAAGTTTCCCGGTTTTTAGTATTAATAAAGGGCACATGTTTTTTAAGGAAAAATTCCATGAGGCGCTTGATCAGGGTTTCGCTACAAAATCAACATGCCATCGCGGCGATAAGTTTTGAAAACTGTCCAGCGAAAACCCGGATG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACATGCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 208051-209488 **** Predicted by CRISPRDetect 2.4 *** >NZ_UJBD01000003.1 Klebsiella pneumoniae strain EuSCAPE_UK105, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================= ================== 208051 28 100.0 33 ............................ TCAGGCTTAGGCTTTGAAAGTACCGATGAAGGT 208112 28 100.0 33 ............................ CTGATCGAGTGGGCTAAAACACTCGTGCGGATA 208173 28 100.0 33 ............................ TCCTTTTATTCGCCGTCAGTTTCGCCCCTCAGT 208234 28 100.0 33 ............................ TGGCGGGCCTTATGGGGCGGAAAGGCGGGTTAC 208295 28 100.0 33 ............................ CCTGGCGGCGGTAAACGCTGTTCCCGCGTACCG 208356 28 100.0 33 ............................ TGATCGCCGCCGGCTATGTCCAGAAGAAAGCCT 208417 28 100.0 33 ............................ CGTTGTCCAGATAACGCCGCAGATCAGCAGGCA 208478 28 100.0 33 ............................ TGTCAGCACCGGCAAAAGCCGCCGCGGCTGCGG 208539 28 100.0 33 ............................ CACTACTAAGCACTGGATATTCGTTGCCGCGCT 208600 28 100.0 33 ............................ TTAACGAGTCCTGTAAAGAGCATGGCGATATGC 208661 28 100.0 33 ............................ CAGCTACTCGCAGCTGGCATCCGCCGCGCGCGG 208722 28 100.0 33 ............................ TTGACGCAGATCCGCCCGTTCATGGGTGAGATT 208783 28 100.0 33 ............................ TCAGGTACTCCTCTTGTTTTTTCGGTTCCGCCT 208844 28 100.0 33 ............................ CTGGACGAGTCATTGAGAGGGAGATACGGCGGA 208905 28 100.0 33 ............................ TAGTTCGCGAGGAGACGCCCCAAGGTTCACCGC 208966 28 100.0 33 ............................ CAATAGTCCGCCCGGAGGCGGCTCATTGTGTCG 209027 28 100.0 33 ............................ CCTCATCTAGTAAAAGCGGTTTTGTTATGAATG 209088 28 100.0 33 ............................ TCTGGTGAAAACCACACCAGGCCAACCGGGCGG 209149 28 100.0 33 ............................ TAACGACACCAGGCGGCATGATCACCTATGACA 209210 28 100.0 33 ............................ CTTCACGCCGATGGAGCGGTCTTTCTGCGTCGG 209271 28 100.0 33 ............................ TATTTCGGAGTGGCCCAACGACGCCGCCGTGTG 209332 28 100.0 33 ............................ TCCGCCGTTTAATCGCGGTGATGATATCCGGCA 209393 28 100.0 41 ............................ TGGAATCCACGACGCGCCGTACCAGCGCGGGCATTCGTTCT 209462 27 85.7 0 ......A...T.T....-.......... | ========== ====== ====== ====== ============================ ========================================= ================== 24 28 99.4 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAAGAACGGCTCTGTATTGATTTGGCATTTTCACTCTCGAGGGAAATGGCGGGCCGCTACGATAAACACAAAGTCTCTGAGGCATTCAGAAAGCGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTCCGTGGACGAATGAAGCTGTGGTTTGTCGAACCACGGCCAAATGTTTTTGTCTCAGGCGTCAAAGATTCGGTCGCACAAACCGTTGTTGATTACCTGTTGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGATATTAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAACTCTCGCTCTTTCACAATATGTTGGT # Right flank : CTTGTGAGGGGTCTACCAGCATTGGCGTACTGGAGTCTTCCCTACACATGTGGGACTTAGCAATAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTTAAAATAATTTTTAGCTAATGAAACTGTCGTTTGGGAGAGGTAGGAATATTTTATTGCGAAAGAGAAGGGAACTGTTTAAAGCAATAACGGCGAATGATTCTTATAAAATGAAGGATAGGGAGTTCATATGTTTCGACTTTACCAGTCACATGATTTAATACGCCAATTAAATCCTGAAGACTTTCAATATATTTTGACACCAGCAGGTTCGCTAAGAGAAGCGTGTATACATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCATTTGGCCTACCGAAGGAAATATACAACTCATCTCCACATAAAAGGCCCTATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTATGATGAGGTAGAGCACAGGCTACAAATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 545589-547383 **** Predicted by CRISPRDetect 2.4 *** >NZ_UJBD01000001.1 Klebsiella pneumoniae strain EuSCAPE_UK105, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 545589 29 100.0 32 ............................. TTAAAAAACCAACCACATTGACGAACACGGCC 545650 29 100.0 32 ............................. CATCGCCTGGCGCGCCAGGTACTGTGTAAATA 545711 29 100.0 32 ............................. CGCGGAGAAGTGGCGGCGGCTACGGCATTTCG 545772 29 100.0 32 ............................. ATAATGCTCAACGTTAACGCGGGCGCCGTAGA 545833 29 100.0 32 ............................. GGGGAAGAGGTGATCCGGTTTAACCCGTATGC 545894 29 100.0 32 ............................. ATTATCGGGAACTGCGCGCCTGCGATTATGGC 545955 29 100.0 32 ............................. CGATTACATGTTTAGCGCGCTCCGTCGCATGG 546016 29 96.6 32 ............................A GCACCAGAACTGATTGCGACACGCCTGACTCC 546077 29 100.0 32 ............................. TATCTTCATCTTGTTCCAACACTATACCACAC 546138 29 100.0 32 ............................. GCCGATATTGATTCGGCGTTTGGTGGGGGCGT 546199 29 100.0 32 ............................. AATACGCTGGCTACGCTGGCGATTCGGACGGG 546260 29 100.0 32 ............................. GTTTTGCCCCCTTTCACTGGCCATGAGTGCGA 546321 29 100.0 32 ............................. ATAATACTGTATACATAAACAGTATTTGAGGG 546382 29 100.0 32 ............................. GTTCGAGCAGCAATTGCGTGATCACCCGGATC 546443 29 100.0 32 ............................. TGTTTGCCTGTAGTGTCGTGTTTATCGCCGCC 546504 29 96.6 32 ............................C TGAATTTTCACCAGCGAGCGGTATGCCGAAGG 546565 29 100.0 32 ............................. ATAACGACACTGGTTATTGCCTGACGTGCGGC 546626 29 100.0 32 ............................. GAAGAAGTGGGGCCAAAGGTGCCGCTCGTCAG 546687 29 100.0 32 ............................. CCCGCCGAATATTTCATAAACTGCTGCGTCCA 546748 29 100.0 32 ............................. CGTATTCCTGTGTCGTGGGCGCACGAGAAAAC 546809 29 100.0 32 ............................. ATGCGGGCATGAAAACGACATTTCACACTCAC 546870 29 100.0 32 ............................. GGATTGACGCGTACCTATTTCTCTACACCGTC 546931 29 100.0 32 ............................. GACGGCGAGAGCGTGTTCAACCTCAACACACT 546992 29 100.0 32 ............................. CCTGAATCTTCACTTCGTCGATCATTCTGCGC 547053 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 547114 29 100.0 32 ............................. GCGGCGTCAGGTGTGTGGCAGAAAATTATTGC 547175 29 100.0 32 ............................. TCGTCTGAGTTCCGGCTTACGCCGTGCCGACA 547236 29 96.6 32 ...........................T. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 547297 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 547355 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================ ================== 30 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : CGTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTGGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATATAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //