Array 1 2116-2323 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFRE010000010.1 Gilliamella sp. W8123 NODE_10_length_54480_cov_243.117235, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2116 28 100.0 32 ............................ TATTGAGATATCAGTACTCAGACTGATATCTA 2176 28 100.0 33 ............................ CACGGGGCATTACTAATAATCGGTGCTGTCGCT 2237 28 96.4 32 ....................T....... TTATATCGTTGAACAACAGAACGGCAGAGTAA 2297 27 92.9 0 ....................-.A..... | ========== ====== ====== ====== ============================ ================================= ================== 4 28 97.3 33 GTTCACTACCGTGTAGGTAGCTTAGAAA # Left flank : CTTAGCTATTGAAGCTGAGGATAAGAAAAATAATGTTAGGACGATAAAAACGATTTTGTGTCGCGACATTCGCAATGTGCTGACAACTGAGCGAGGTTAGCATGGCAAACAGGGATGTTTGCCAAGGCTGTGATTTGTCAGGAACAAATCACAGCCGGTGCGTTAACAGCGAACGAAGGCGGAAGGCAGTCACATCGTGACCACTTGCGTGGTCGCCGCGGGAGATTGTAAAGAGGGTTCGCGCCAACCCTCTTAACTCGGACGTAATCACCGTATAGAAATAACCACAAAACAACAAACGTCCGAAACTAAAACAACTAAAAAATTTTGAGGAACGGGGTTTTTGAAACTTAAATTCCTACTTATTGCTAACCCTTTTTTTAACTTAAAATAAAATTATTAAAAATCAATATGTTGAAAATGGCTCAAAAAAAGGGTTTTTATTGGTAAAAATGGACTTTGCCTTTTTGCCAACAACATTTATAGTATATTGGATTCTA # Right flank : ATATATAAGTGGTGGCATGGGTAACATCAAGAAGTACACTGCTTATTGAGTAGGTTAAAAATGGTGATTTTTTAAAAGGGGATAAAGGGTATATTATTTCTAATAAACAGCAAATAATCGATGCTCTTTTCGAGCTATTAGTGTTCTTCTTTACAAAAGTTAACAATTAAACCATCAAAAAAAGTTGCATGGTTTTTTGCAATCACTATACTTTTATAGCATATTTATACGAATGGATAAATTTTATGCCGTTAGGCTTAAAATTTTAAATAAATCATAAAATTGGATTGACAAGGATATCTGATATGGATTATAATTTTCAACACGCAACACGCAACACGCAACCTGCCCAACCTATAATTTCACCTCTCTAAAGTTAAGCTCACACCGTTTATTATTTCACTGCAGTTTATTATTTCAGCAATTTCCCAAATTTCCGAAATTCTCGCAAAATTTTTCAAAATTTCTTAATTTAGTCTGTTTATCCCGGCAGATGGTTT # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGTGTAGGTAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: F [matched GTTCACTACCGTGTAGGTAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.60,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 570586-569581 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFRE010000001.1 Gilliamella sp. W8123 NODE_1_length_637858_cov_277.580184, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 570585 29 100.0 32 ............................. GTTTAAAATTTCATTTTTTGGGTTTTTTACCA 570524 29 100.0 32 ............................. CTGGTTGTGCAGCGATGTGTATTTCATCAAAA 570463 29 100.0 32 ............................. CTTGAAGAAATAAAACGACGATTTGGTTTTAG 570402 29 100.0 32 ............................. CGACATCTGCGGCAACTACTGCGACTCAAATC 570341 29 100.0 32 ............................. AAGTTTGTATAGGGAATTTAATTTAAGTTGTA 570280 29 100.0 32 ............................. ATAAAATAATTGTTGACTAATGACGCGCGCCA 570219 29 100.0 32 ............................. GTTAATAGCTCTAATTTTATTGAAATCTCATC 570158 29 100.0 32 ............................. ACCTTCAATCTCAGGTTAAGAGCCAAAAGGAT 570097 29 100.0 32 ............................. AAAATTGGGAATCATATGTTGGTACCGCTGTT 570036 29 100.0 32 ............................. TCAGTCAAAACAATTATCCCGACATTGTCAGG 569975 29 100.0 32 ............................. CCTTTTTTTAGATCGTCGATCTCGTTATCTGT 569914 29 100.0 32 ............................. AATTTAACAAATTCATTAATGAAAACATTTTT 569853 29 100.0 32 ............................. ATATTCGCCAGTGCAATATTTGGGCTCTGATT 569792 29 100.0 32 ............................. CAAGTGGTAATTCCCGCACGTCCTTGGCTTGG 569731 29 100.0 32 ............................. GCAAATTATAACGTCGATGTGTATAGCAATTA 569670 29 100.0 32 ............................. AAACAGACCTAACACCTGATTTTCTGAAACAA 569609 29 93.1 0 ..........................A.T | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.6 32 GAGTTCCCTGTAGGTACAGGGATATACCG # Left flank : CTTATCGAAGAAGTTTTGTCTGCTGGTGGTATTGAACCGCCCCCAGCTCCAGATGATGCCCAACCACCAGCTATCCCAGAACCTCAATCTCTTGCTGACAGTGGCTTTAGGAGTCGCTAAAAATGAGTATGTGTGTTGTAGTAACTGAAAATGTCCCTCCAAGGTTACGAGGTCGTTTAGCAATTTGGTTACTTGAAATTAGAGCCGGGGTTTACATCGGTGATATATCAAGACCAATAAGAGAAATGCTATGGCAACAAATCACTAAACTTGCTGAGGAAGGCAATGTTGTCCTTGCTTGGGCGACTAATACTGAGTCAGGATTTGACTTTCAAACTTATGGTGCAAATAGAAGGGTTCCGGTAGATTTAGATGGACTAAGGTTGGTCTCTTTTTTACCTATTGAAAATCAATAGGTTAATGTTCTTTAAAAATTAGAAAAATTTGGTAGATTTTAACTAACTAAAAAATATTATATAAAACAAATATCTATATTTAGA # Right flank : TTATTAGCTAATAAAATTACATCCAAATGGTTTTAAATTATCTACCTTTATGTGAGTAGATGGTATACACTCCTCAATATTTTTTACAAGGCTGTAATGATAGCGTTTTATAAAAATAAAAACTAATAATCATATGTATAGATAATATGAAATAGAGGTTTTTTAGTTAAACTAAAATAATTATTAAAAATAGCGTACAATACTCAACATTAATCATCAATTCATTATCAATCATTTAGGAATTTTGTATGACAGGTAAATTTATTGTCATCGAAGGTTTAGAAGGTGCAGGCAAAACAACAGCCATCAATACTGTTGCTCGTATTTTAAAACAACATCATATTTCTGATTTACAATTTACTCGCGAACCTGGCGGTACTCCAATTGCAGAAGCATTACGAAATATTATTAAAAATGGTTTAGATAATGAGCCGCTAACTGATAAAGCGGAATTGCTAATGCTTTATGCTGCTCGTATTCAATTGGTTGATAATGTAATT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCTGTAGGTACAGGGATATACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCTGTAGGTACAGGGATATACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [76.7-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 588621-588832 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFRE010000001.1 Gilliamella sp. W8123 NODE_1_length_637858_cov_277.580184, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 588621 29 100.0 32 ............................. TTTTGGAATTATTTTAAACTATTTTAATGTTT 588682 29 100.0 32 ............................. CAAAACACAAATTTAATCCCACATATTTTTTG 588743 29 100.0 32 ............................. GGTAGAGAGTGTCAGGTGCGGTTACCTTGTTG 588804 29 82.8 0 ...........GC.............TAT | ========== ====== ====== ====== ============================= ================================ ================== 4 29 95.7 32 GTGTTCCCTATATACATAGGGATAAACCG # Left flank : AGTTCACAAGCTAAAAGTATTATATTGAATTTTAATAAATGCTATAGCCGTGAACAGTTCAATGGTGAATGGGATAAGGAAATTGAAGTTTCAACCCGTTTATCAAAAGATAATATTGATCTTTATTTAGCATATCAACAAGATGGAAAAGTTATTCCTTACTGTAGTAGTAACGAATACGCATGGGAACAAAGCCATGTTACAATTAGTGCATCTAAATGGGCTAGAGTTAAAAAAGCCGTCCCACAACTTGACGAACAGCATCTAGAAAAATTGAGACAACAAATACATAGACCAAATGCCATTATTGTGTTAATTGAGACAGAAAAAGAACCTTCTTTTTATTCCAAGGAATTAGGCTTTTATCTAAATTAATTTAAATTTAAAGTTAAATATTAATAATTTTAACTTGCAATAAGTTGAGTGAATTTCATACAGAAAAAATCGGTAAAAAATTACTCCCTTATATTTCAATTATAAAACAAATGGTTATAATTAGG # Right flank : TAGATTTAGTAATTAGTTAGAATCAAATATTAATTAGCTTTGATTAACCAAAGCCAAAATATTTTGGATGGCTGTTTTAGCTTGATGGCTATTTTTCCAACATGATGATCCCGTTAGTAAAGCACCTTTATTTAATATTTCATCTAAATTGCTATTACGGAGTTTTTCGAAGGAATCTAATTCCATCTGTTGTAATCTTTCAATAATTTTATCGCCAACATATTTAAGTTGTAGCAATTGTTCTTTTTCTAATTCTGAAAAGGCCATTTTTTCTATCCATTTAAAAAATTGTTATGATGTTACTAATGTGAATTTAGTTTTTTCCATTTCCTGATTTTAGTTCTAAAAGATTTAAATGGCGCAACTGAATTAATATGAATAAATCGTGCCACAGGCCATGCTGAAGGATAAGGTTTTGTCCAATTGCGAGCATCTTTAGTAAAAAGCGTATTATCATCTAATGACTCAATCCAACTATTCCAAGTAGTCAGTTTCTGCTT # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTATATACATAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: F [matched GTGTTCCCTATACACATAGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.90,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 4673-4880 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFRE010000002.1 Gilliamella sp. W8123 NODE_2_length_334762_cov_238.113976, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4673 28 100.0 32 ............................ AATTTATTCTCGATAAGATGATGCCGAATCAT 4733 28 75.0 32 .................TA.C..AGAA. TGATGCGTTATCTAATAGTGATTCGTCGTTTT 4793 28 78.6 32 .................TA....AGAA. TCGAGTTACAACTCCTCAAATTGCAGAACACG 4853 28 96.4 0 .......G.................... | ========== ====== ====== ====== ============================ ================================ ================== 4 28 87.5 32 GTTCACTACCGTGTAGGCGGTTTTTTTA # Left flank : TATTTCTTAGTTTTTAGGTATTGAAGCTGAGGATAAGAAAAATAACGTTAGGGCGATAAAAAAACGATTTTGTGGTGCGACATTCGCAATGTGCTGACAACTGAGTGAGGTTAGCATGGCAAACAGGGATGTTTGCCAAGGAGCGTTAAAAGCGAACGAAGGCGGAAGGCAGTCACATCGTGACCACTTGTGTGGTCGCCGCGGGAGATTGTAAAGAGGGTTGGCGCCAACCCTCTTAACTCGGACGTAATCACCGTATAAAAATAACCGCAAAACAACAAACGTCCGAAACTCAAAGAATTAAAAAATAAAGAACTAAAAAATTTTGAGGAACGGGGTTTTTGAAAATTAAATTCCTACTTATTGCTACCCCTTTTTTTGGGCTTAAAATAAAATTTTTAAAAATCAATATGTTGAAAAACCGCTTAAAAAAAGGGTTTTTAATAGTAAAATTGCGCTTTGCCTTTTTACCAACTGCATTTATAGTATATTGGATTCTA # Right flank : ATGCCTGTCATTCGACCACTCAGCAGATGAAGTAACCAAACTCTTACAAAGAGCTAAAATTATCATTGATGTACAAAAAAGCAACGATAAGCTACGTAAAAATTGTAGGTAAGGATTATTTTAAAGATGATTATGAGAATGGAAATTTGTCTCAATATTGAGTGACCTTGTTTGTTGATTATGAAGCTAAAAATGATTTTGGTGTTGATTTAAAAAACACTTCAATATGTTATTTTTATTCTATTTTAATAAGAAATGATTATTTTATGTTCCCAGATTTTGATAAAATGGCGATCTCAAATAAAATATATAGTTATATTGATTTAATGACATCAATAGAACATTTTCATTCTTCTTTATTTGATATTGGAAAAATAAGTATTGTCGATAAAATATCGTACCAGATTGATAAAAATAATTTCCTCTATTATGAGAATGATTGAATTAATAACTTTTATTGCACTTGGCTAACAAATTTTATACTATCTATCAAAATTATT # Questionable array : NO Score: 3.43 # Score Detail : 1:0, 2:3, 3:0, 4:0.38, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGTGTAGGCGGTTTTTTTA # Alternate repeat : GTTCACTACCGTGTAGGT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTACCGTGTAGGTAGTTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 68909-68208 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFRE010000002.1 Gilliamella sp. W8123 NODE_2_length_334762_cov_238.113976, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 68908 29 100.0 32 ............................. CGGCGATAAAAGCCAATAAAGAAGGTAAGATA 68847 29 100.0 32 ............................. ATGCCGTGCTAGTAATAGACGGCTACGAAATT 68786 29 100.0 32 ............................. TAAAGGGGTTGGCAATTTCAGGAGCATGTTTA 68725 29 100.0 32 ............................. TCTTTTATAAATACAAAGATTATATAAATACC 68664 29 100.0 32 ............................. GGGCATTATCATGGACGGGATTATTTGATGAT 68603 29 100.0 32 ............................. AAAATGGTGCGTGCGAATTTAATAATTTTTTC 68542 29 100.0 32 ............................. TTCTGATGTTTTTCTTAACTGCTGTTTAACTG 68481 29 100.0 32 ............................. CTAATGGTTAAATCAGCTTTAACTTGGCGCTC 68420 29 100.0 33 ............................. GGGATCGAATTATATTGCACGCTATGGATGGAT 68358 29 100.0 32 ............................. GAAATAATATTATGGCATATTATAGCATAGAG 68297 29 100.0 32 ............................. ATATTTTGTCAGTTTCGTTTTTAACATTGTGC 68236 29 82.8 0 .....................C..TTGA. | ========== ====== ====== ====== ============================= ================================= ================== 12 29 98.6 32 GTGTTCCCTATACACATAGGGATAAACCG # Left flank : TTCAACGATGATGGTGAACCAACCAGCACAGCCGGCCGCCCTATTCTATCGGCCATTGAAGGTCAAGATTGTGATCAGGTGGTAGTGGTAGTTACCCGTTATTTTGGTGGTATCAAATTAGGTACAGGTGGACTCATTCGGGCTTACGGTGGTTCGGCTAGTCACTGCTTACAACAAGCAGAATTGATCGAACTTATTGCTAGAACATCATTACAATTTCACTGCTATTACAATGAATGGCCAATTATTGAAAACCGCTTAAAAGAACTAGATGCAGTCATTGAACAACAAGATTTTGATGCTGAAGGTGTAACTGTCATTATTGCTATAACACAAGATAATGTAGTCATACTTAAAAAAAATATTAGCGATATTACTCGCGGTAGAGTGATTATCAAGACTTAAAACACCTGTGTAAATATCCATCCAAATACAGCAAAAAAATTGGTAGAAATTGTAGACTGCGTATTTTAATTATAAAACAAACGGTTATAATTAGA # Right flank : TTCCCTGTGTGTACAGGAATTAACTTCAAATTCAAACAAACCACCTTCGGGTGGTTTTTTATTGCCCAAACCTTTTAAATAACATACCATTACCCTAAAAAGGAGATGGCATGAAAAGAATTACTTTATTTGGGATAGCTTGTTTTGCTTTGTATGGTTGCGGTAACGATAGTGATGGGCAAAAGGTCACTGAAGAGATGTTACTTGGTGAGTGGAACTGCAAAGTTAGCTCGCAAGAAGCAGAATCAAGGAATGGTAAGTTACAAGATTTTGGTGATCCAGAGTTCGAGGAAAATAAATACATTTTTACCAAAAAAGATGGAAAGCTTTTTGTAAGTTTATCTTTATATAAAGAAGATTTAATACCTTTTAATCTAGAGGATATTTACAAAAGACCTGAGTATACGGAATATGATAGACAAAGAACTCAAAAGATTAAATACCTATCAAAAGATAGTTTTAGTCTAAACGGTACATATACAATCATCGATAAAAACAAC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTATACACATAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: R [matched GTGTTCCCTATACACATAGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.30,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //