Array 1 54954-54787 **** Predicted by CRISPRDetect 2.4 *** >NZ_SCES01000001.1 Fructilactobacillus sanfranciscensis strain TMW11304 Lactobacillus_sanfranciscensis_TMW_11304_contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =============================== ================== 54953 35 100.0 31 ................................... CGTGGTTCTGCAAGAGTCGGCTATGCCCTTT 54887 35 100.0 31 ................................... CAGTGGATTGGCCCACAATTTACTTTGACGA 54821 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== =============================== ================== 3 35 100.0 32 GTTTTAGAAGTACGTCATTCTAATGAGATTAAGAG # Left flank : TAGTGACTGATACTGAGCAAACCCTAAAATTTAAAACAAAAATTAAAAATGATGTATTAAATAATCTAAATGATGATAATCGAAAACGGTTATTTCAACTCGATGCAGAAATGAAAGAGATTTTTTTAGGTGCCGCTTATTTAGATGATTTCCCCATCCAAGTTGATGAAGATTGGGATATTAATAAACAATATGCATATACAGGTACTAAATTGTTGAATGTGAATCATGATAATCCATATGATATAATTAAAGAAGTTCTTAATTTATATGCGAAATTTGATTCAAAAAAGTTGTTAGTTCTTAAAAATCTATTTAATTATTTGTATTCCAATCAGATTGAAAGTCTGGTTCAAATGATTAAAACTTTAGAATTGAACGTACTTATTTTAGATTTTTCAAGTGAAGATTATTCCACTTTTCTAGAAGAATGCCGTTATTACTGCATTGACAGAGACTTTGTGAGATGGGATTCTGCTGATAGGTGAATATTACAGACG # Right flank : TAATAATGTTTAAATTTAATATTGATACATCTAAACACAAAAAAGAAATATACTTTAAAAATTTCTAATATTTTGATTTTAATAATAATTTTAGCAATAATTTGTTTTAAGTTAGCTATGCAATTATAATTGCATGATCAATAATAAGTTCACCATAATTAGGTGGACTTTTTTAATACTCAAAAATCACATCATATTAAAATCTTGGCATGCATCATAAATGTTACTTATGTAAACTATAGGAAAATTTAATAAATTTAGTAAAAACCATTTAAAAGAAGATTAAAATACAATATACTAAAACAATATAAGTGATTAATCACACAATGAAGGAGGAGTTTACATTTATGAATAATGAAAAACAAAACAGCTCAAGTTTAATTTCACGTTTAGAAAATTTTAAAATCGATGGTTTCGGTTTAGTTTTCTACGCTATTATTGGAATTATCTTTGTAGCTGCTGTTTTAATTCACGCTTTGCCTAATGATATTTTAGGAGCT # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGTACGTCATTCTAATGAGATTAAGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.40,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [86.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 1052-159 **** Predicted by CRISPRDetect 2.4 *** >NZ_SCES01000009.1 Fructilactobacillus sanfranciscensis strain TMW11304 Lactobacillus_sanfranciscensis_TMW_11304_contig_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1051 29 93.1 33 ......T.....................C ACGGCACACTCGTATTCTGGATAGGCTTTTTTG 989 29 100.0 33 ............................. GGAATTGACGGCTACCATGCTTCTGCCGACATG 927 29 96.6 32 ............................C GTCCCACGCAAGTCAGTCGCAAATTGTACACG 866 29 100.0 33 ............................. CAAGTCTTGCGAATCATTCAATCCTTCGCCTTG 804 29 96.6 32 ............T................ TTCTTCATGTTTCTGCTCGGCTGTGGCTCTAA 743 29 96.6 32 ...........A................. ATCATGGCGATGAATTTGAAACTCAAAAATTA 682 29 100.0 32 ............................. ATCTTTTTTTCGTGTTCAAAAAATTCCTTTCC 621 29 100.0 33 ............................. TAACAGTTCTCATGGTATTTTGAGATATACATA 559 29 100.0 33 ............................. ACTACTTGAAATGACGTACCTACAAAACCGATG 497 29 100.0 33 ............................. AAAATTGAAAAACTTGAAGAAGCACTTGTTAGA 435 29 100.0 32 ............................. ACTCATAAAACAAGCCTACAAGTTGAATTTGA 374 29 100.0 33 ............................. ATAAATGTAATGAAAAGTGAGAGGGGGCTTAAA 312 29 100.0 33 ............................. AAATTTTTCAGTTCACGCTTTTGGCTTTCATCA 250 29 100.0 33 ............................. AGCAAGTACAGCATTATCTTATATCGTTGGTTA 188 29 89.7 0 ..........................GTA | G [161] ========== ====== ====== ====== ============================= ================================= ================== 15 29 98.2 33 GTATTCCCCACGCATGTGGGGGTGATCCT # Left flank : TTTGTTCGTGTTGGAAAATTTAGCTGGAGTTACTTTTGAAAAAACTAATTCTAACAAGAATCAAACTAGAGAATTACATTCATGGGCTTTTTATGATTTACAAACCAAATTAGCTTACAAAGCACGGAAAAATCAAAGTCAGGTCTTGATTGTATCAGCTAAATATACTAGCCAAAGATGCCCTAAATGCGGTCAAATCAGAAAAGAAAATCGTAATCATAAAATACATCGATACGACTGTGTTTTCTGTGGCTTTAAAACTAATGACGACCGGGTTGGAGCTATGAACTTGTACGAATTAGGCAAACAATATATTTTCGGAATCGAAAATCCTAAATTTGAATTAACTAACGTTACCGACTGATATGTTGGTAATCTAGGGTGCTGTCAACCACCCAAATGTAGCCACGTATAGTGTGGGAGCAATAAAGTTGCGTTATGACCACTGACCGCAAGGTCGTGAGTTACAAGCCTCTCACTTTAGTGAGGGGTAGTTGACT # Right flank : AAGCTGATTCCTGAGACAACTTTTAAGAGAGCGTATAATGAATAAATCGTCTCTCAAAAGGAAGGAATTTTTACATGCCAACTCGTTACGACAAAGAATTCAAACAAAACATCATCAACCTATATAAACAAGGCGAATCAGCCGCCCAACTGGCCAGAG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGCATGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.87 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], //