Array 1 10-404 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGYBJ010000128.1 Klebsiella pneumoniae strain MRSN752729 MRSN752729_contig00131, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 10 29 100.0 32 ............................. CAGGTTAAACATGTAAAAAATGACCGTCGCCG 71 29 100.0 32 ............................. CACATTGCCCGGTCTGAAAAGTATTTGAAAAT 132 29 100.0 32 ............................. TCCGCACAGTCAAACGCTCCAGACACCAACCC 193 29 100.0 32 ............................. CCGGAACACCACCAGTAACAGCTACTGTAGGC 254 29 100.0 32 ............................. TGACCCTGTTGATTTTGTTCCAGGTAATACGT 315 29 100.0 32 ............................. TTAACCTCGTCGTTCTGGTTTCCGCCCAGGAT 376 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTTTTTTCAG # Right flank : GAACCTGAATTCGAAGGGTGGGTCATCCTTCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [13.3-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1336-333 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGYBJ010000102.1 Klebsiella pneumoniae strain MRSN752729 MRSN752729_contig00104, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1335 29 100.0 32 ............................. CAACCTCAATTCCTAATGGCTGTCTAAGGAAA 1274 29 100.0 32 ............................. CAGGGTTTGCCCTTTTGCACCGCGCAGCGGTC 1213 29 96.6 32 ............A................ AGCAACGTTTCCGGATTATATGGCTGGAACGT 1152 29 100.0 32 ............................. TGGTGCTCTCAACCGTCACCCGCTGGCTGGAA 1091 29 100.0 32 ............................. TGGTGTTGTCCACGGTCACCCGCTGGCTGGAA 1030 29 93.1 32 ............CA............... AGGTATTTGACCTCATCCAGAAAGGCACAGAC 969 29 93.1 32 ............CA............... GCACCCTCACGGATACCTTTTGCACAGTGTTA 908 29 89.7 32 ............CA..............C CTTAGAGAAGCAAAAACCCCACCGAGGCAGGG 847 29 100.0 32 ............................. TTACTTTTTGGCAGTTGGTAAAACACTTTTGC 786 29 93.1 32 ............CA............... CGAAAACGGCAACCTTCATAAAAACGTCTTTT 725 29 100.0 32 ............................. CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG 664 29 93.1 32 ............CA............... CAGCGTCTGAACGGACGAAACATCCCTGTTGA 603 28 93.1 32 .....-.......C............... CGAGCGCTCTCCTGGTAAATCGGTAGCTCGGA 543 29 93.1 32 ............CA............... GCTGGATTTCCGTCAGTTGGTCAGCTGCTGCT 482 29 96.6 32 ..............A.............. TTCCGGACTCCTGTTTCCGGCAGTGGATTAAA 421 29 89.7 32 ............CA...........A... CACTACCAGATCCGAATGGACACCCGTAATGA 360 28 82.8 0 ............CAC........-....A | ========== ====== ====== ====== ============================= ================================ ================== 17 29 94.9 32 GTATTCCCCCCGTGTGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : ACATAAAAACCGCAATGGTGGGGCTTTTGTTATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCTTCAGGATAACCCACATTCTGTCAAATCTTGCAGGTTGCAATCAGCAAAGGCCTTACGTCGATAAATTCATGCCTTGAGCTGGTAAGGAAGTATGACGTTATAACTCTGCATTTCTGGTTGATTAAGGTAGGGCGGCATTCCTGCTTTAAAAACAATCAATAATTTTGAACGGTAGTCGTCTTGATCCCAACTGCTACCTGATGGACTAGGCACCTGCAAAGATCCAATTTATACTGGTTATATATGGGT # Questionable array : NO Score: 5.54 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.53, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Alternate repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [19-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1-1368 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGYBJ010000008.1 Klebsiella pneumoniae strain MRSN752729 MRSN752729_contig00008, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1 29 100.0 32 ............................. GGACCCCGAGCGACCCGGTCACCCTCCGACCT 62 29 100.0 32 ............................. CCGTCGAACGGCGGTTATATCCATCTTGAGTC 123 29 100.0 32 ............................. ACCGATCCCACAATTGCGGCGGTTGAGATTGA 184 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 245 29 100.0 32 ............................. CCGATTGTCTGGCGGTCGAGCGCCATTTGCTC 306 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 367 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 428 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 489 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 550 29 100.0 32 ............................. CCCTCCGCTTTCAGGGTGTGGCTGATATCACC 611 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 672 29 96.6 32 .............A............... TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 733 29 100.0 32 ............................. ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 794 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 855 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 916 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 977 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 1038 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 1099 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 1160 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 1221 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 1282 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 1340 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================ ================== 23 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : CGTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 70287-71109 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGYBJ010000007.1 Klebsiella pneumoniae strain MRSN752729 MRSN752729_contig00007, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 70287 29 100.0 32 ............................. GAGCAGGCACCCGCCGCAACGACGAAGAGCGC 70348 29 100.0 32 ............................. AAATCAGCCAGCACCACGATTCTGGGAAATTT 70409 29 100.0 32 ............................. ACAGGCTTACCCGTATTGAGACGGTTGCTGAA 70470 29 100.0 33 ............................. GAAACCCCATCAGATGACCCTCCCCATGTTGGC 70532 29 100.0 32 ............................. TTGCCTGGTCTGCTTGGTGATGATCCGTGGTA 70593 29 100.0 32 ............................. TACAGAACGACTGAGGCGGCGTGTATTGCATA 70654 29 100.0 32 ............................. GATCTTAACTCTATTGCCAATGGCGCAATTCA 70715 29 100.0 32 ............................. GGCGATGCGCGCTCTGCTGGCTATCGGTAAAA 70776 29 100.0 32 ............................. AATGCAGCAACCGGCAAATATATCGCCGGTAA 70837 29 100.0 32 ............................. GGGCTGCCGCACGCCTGGGACGAGTCGAGCCC 70898 29 100.0 32 ............................. CCGCAATAACAAAAATAAATGAGGGTTAAAGT 70959 29 100.0 32 ............................. GTAAATGGGAATGAGTAGAAGAGCGTCATTGG 71020 29 100.0 32 ............................. CCCCCGCGCACATGCTTAAACGCGCTATCACG 71081 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 14 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCCTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : GGCATCTGTTGTGTAATGTTGAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [76.7-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //