Array 1 22506-23334 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CABFLR010000004.1 Haemophilus haemolyticus isolate Haemophilus_haemolyticus_BgEED18, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                 	Spacer_Sequence                      	Insertion/Deletion
==========	======	======	======	================================	=====================================	==================
     22506	    32	 100.0	    33	................................	ATTGAAATGTTGTAAATTAAGTTCAATATCTTC    	
     22571	    32	 100.0	    34	................................	GCTTACTAATTTCTTCTGCGGTTTTTGGGTTTTT   	
     22637	    32	 100.0	    34	................................	TGAGGATAACGCCTATTTATCTAAGTTGTTTAAT   	
     22703	    32	 100.0	    36	................................	TGCAAATCTTCAAACAATTTAGGTAATTGCTCTGGG 	
     22771	    32	 100.0	    34	................................	TTGCACCAATTAATGCGTTATCGGTCTCAGATGG   	
     22837	    32	 100.0	    35	................................	CTGTATTATCTGCTACCCAAAACATTTTTAATTCT  	
     22904	    32	 100.0	    35	................................	TGTTTCGTCTTGTAGTTTCTCAAGCGATGCAAAAA  	
     22971	    32	 100.0	    33	................................	ATCATTCCAAACGTTTCATTGTGTTTTAAATGC    	
     23036	    32	 100.0	    34	................................	AATATTGAGAAGATTGCGAGAGCAACAGAAAAGA   	
     23102	    32	 100.0	    37	................................	ATTGGCATACTGCATATCCAAAGACGCAACATCACTC	
     23171	    32	 100.0	    34	................................	CTCTTCAAGACTTGGCACAATAATTTCACTTTCC   	
     23237	    32	  96.9	    34	...............................T	AATGAAAAAATCGCTTTATGATACCGCACAAGAA   	
     23303	    32	  87.5	     0	..........T..G....T.....A.......	|                                    	
==========	======	======	======	================================	=====================================	==================
        13	    32	  98.8	    34	GCAGCCGCCTCCGCGCGGCTGTGTGTTGAAAC	                                     	       

# Left flank :   TTGATGAGATAAACCATGTTAATGCTGATTACTTATGATATTTCTTTTGATGATCCAAACGGGCAAGCGCGATTGCGCCGCATTGCAAAACATTGTTTAGATTACGGCGTGCGAGCACAATATTCAGTATTTGAATGTGATGTCACGCCTGACCAATGGGTTATGTTGAAAAACAAACTGTTGGAAACCTACGACCCCACGTGCGACAGCCTGCGTTTTTACCATTTGGGCAGTAAGTGGCGTAATAAAGTGGAGCATCATGGGGCAAAACCAGCAGTAGATGTATTTAAAGACGTGCTTGTTATTTAGGTCGCTAACCTGTTGTTCTCATTAAAATCCTGATGGGATAGCGATCTTTATTTTCTTTAACAATTTGGATGAATTAATCTATTTGTATAACGGCGGTATGGCCGTTATACTTACCAAACTCCTTATCATAAAATCAGTTAGCGAAATACAGTGTTTAATTTGCTGATTTTTCTTACTTTTTTATGTAGGGA
# Right flank :  CAGCATTAAGTACCGAGCAGTACGACCGTACGCAAGTTGAAAAGCAAAGGGAAGATGAAATTAAAAAAATCAACTCTAACTTTAAATATCAAATCAAGTAGGTAAATTATGGAAAATTTAATTAGATTATCTTTATTGGCTTTATTCTCTATTACTCTCTTTGCTTGTAATAAGGAAAGTAAGGAAATGACAGTTTATGATTATCTTGTGAATAAACCTTTGCTAGATAGTGATATGCAGAATTGTATTAGTGGAAAAGAAAATAATGTGCATAAGTGCGATATAGTAAAATCTGCTTACAACAGATATAACTTCTTTGAAGAAGGTCTTTATTCAGAAAAAGACTTAAAAGAATTCGGCAAAAAATAACTAATAAAAAGGGGATTGTATGGGGTTTTTTACTTATGTAGATAATGCTGTGTCTACTGTATTAAGCAGCCGCCTTCGGGCGGCTGTGTGCTGAAACTAGCTGAAACCCAAACTCGCCTTATCGCCAACAT

# Questionable array : NO	 Score: 6.20
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GCAGCCGCCTCCGCGCGGCTGTGTGTTGAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [4,6] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GCAGCCGCCTCCGCGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-4.70,-4.40] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-5] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [71.7-56.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.55,0.37   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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