Array 1 143965-143393 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOSE01000002.1 Paenibacillus montaniterrae strain J40TS1 sequence02, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 143964 32 100.0 36 ................................ AGAGTGGTACTTGGCAGCTGACTCCAACATTGCTGA 143896 32 100.0 35 ................................ ACTTAGTTAATCAATTGTTATTGAGTAATGTAAAT 143829 32 100.0 33 ................................ AGCAGGATGGACAGATCATGATGCTAGCCCATG 143764 32 100.0 36 ................................ CAAACAGAGGGCAACTGGTTATATGTGGTCTTTGGT 143696 32 100.0 33 ................................ TAACAACATCTCAACTTGCTGAAAGTTATGGAA 143631 32 96.9 37 ...............................T GGGAGCTAGGGTTTTTTGCACAGGATCCGGATATTGG 143562 31 84.4 38 ......A......T.....-........T..T TTCGATTGGGAGACGTGTTATCAAGACACCATTCAATT 143493 32 93.8 37 ..................A............T TCAATTGCCATGATGTTCCGTTTACAGAGGACATAAC 143424 32 93.8 0 ...........AA................... | ========== ====== ====== ====== ================================ ====================================== ================== 9 32 96.5 36 GTCGCATCCTACGCGGATGCGTGGATTGAAAG # Left flank : AGGAGCTATATTTGGAAGCAGTATCCAAAAACATTGATAGTGATTTTATCCAGCTTATTGTTCTTGAGCTACAACGACGAGGGTTAGTATCTCACTTACCTAAATCGGAATTAACGGAGCGCCAATATACGGCATAAGCAGATGTACTCTAGAAGAAGCAGAAAGATTTCCAACTTATATTGGTAAGGTTAGAATGTCGATATAGATAAAAAACAATCGAATGAGGCTGTTCCTTTGTCGTAAGACTAGGGGACAGCCTCAATTTCTATGTTTTAGCAATAGTATAGCAGAATCTAATATGGAAGTAGAGTACTTATTAAATCGTAATATTGGTGCGGATCGGAAGCTCACATAAAAACCCCGGGAGATCCGCACCACGCGTAAAATAAGGGTTTGCGGCAAATTCAGGGTGAAAATATCTCAAAAATATGGTACATTTAAAGCGATCCGCACTAAAGCGTTTGCAAAGCCTTGCTATGCAAGGGCGAAAAGTGTGGGCT # Right flank : TTACATCATGCCAACTACTGAAAAACAGCAGCGATGGAACAAAGCGATTCCGCAAAACGAACGCGGATCGCCTTTAAATCCAAATGCGTCTTTAGTAGCTATTCAAATAAGAGCATTTGGATTTAAAAAGCGACTGGAGCAATGCTTCGTTCCGAAGCGATGTGCCACACAAAGAGGGGCTGCCCAGGTCAGTTTGCACTGACTTTGGACAGCCCCTTACTTGCATGCTCGTTGATATTACAGCTTCATATTGCTGCTATGGCCTGGAGACAGCTTGGCGGTTGGATCAACGTATACTTTCGCATTGTTAATCGCGGTTGGTGCTTCGCCAAAGCCTACTGCAATCAGCTTTAATTTGCCAGGGTAGGTTGTAATGTCGCCAGCAGCGAAAATACCAGGAATGTTGGTTTCCATGCGCGTATCTACGACGATGGAGCCGCCCTGGATTTCAATGCCCCATTCGGAGATCGGTCCAAGCGAGGAGACAAAGCCGAAGTTGA # Questionable array : NO Score: 9.08 # Score Detail : 1:0, 2:3, 3:3, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.00,-9.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 525-217 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOSE01000015.1 Paenibacillus montaniterrae strain J40TS1 sequence15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 524 32 100.0 35 ................................ AGCCATCGCTTCGCTGGCGTCCAACGTTGCAGATA 457 32 100.0 38 ................................ AGAATGTCGGCGCCGGTACCTTGAATTACTGCGTTAAA 387 32 100.0 37 ................................ AGGCAACGGAATGTGAGGAATTCAGAATTACCTCATT 318 31 90.6 38 .........TA-.................... TGCTCCTAGTGGGGAATGCAGTTGATAGGGTGAAAAGC C [305] 248 31 87.5 0 ............CG..-......A........ | T [238] ========== ====== ====== ====== ================================ ====================================== ================== 5 32 95.6 37 GTCGCACTCACGTAGAGTGCGTGGATTGAAAG # Left flank : CATCCTACACGGATGCGTGGATTGAAAGAACATTCTCAAGACCTAGCAACCTTTTCAGATTATCGGTCGCATCCTACACGGATGCGTGGATTGAAAGCAGCCATTGCAGCCATGCCCCTACCGCTCCCTGCAGTCGCATCCTGCGCGGATGGAAAGCGCTCTGGCAAAGACGAATCCGGCAGTACGCGAACTGAATACTAAGCGCGTGCAAAGGTTGAAAGTCCACTAGTCTTTGCAACAGAGCCAGCTCATCAATAAAGGATTAAATAAGCAGATAATACTTTCGGTCGCTAATCAAATGGAAACTGAAAGCTTTTTCGCATTGTGGTCTGGTGCGGAGCGGAAGCTCACATAAAATCCCTGGGAGATCCGCACCTCGCATAAAATAAGGTTTTTCAGCAATTTTAGGGTGAAATCACCCCTGAGATATGGTACATTTAAACCGATCCGCACTAAAGCGCTTGCAAATGCTTGCTGTACAAGGGCTAAATATGCGGGCT # Right flank : GCATTAGCCGTCCAGCCAGCTGGTGCGACTCGAGTGCGTGTCCCATCCTACGCGGATGTGAAACAATTGCTGAGTGTATGCCGTATATAACATATACAGGACTTATGCAGTTCGCCCCAACAATTGTAAGAGCAAGACTTTAATAGATGAACAGTTATCATTCAAAAAAATACTTGACAAATAAAAATCGCCTAAATAATTGTGAAGGATACCTTTT # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:0, 3:3, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCACGTAGAGTGCGTGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.30,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : NA // Array 2 1614-1315 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOSE01000015.1 Paenibacillus montaniterrae strain J40TS1 sequence15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 1613 32 100.0 35 ................................ ATCGAATGTTGCATTGATGTTAGCCAATTACTTCA 1546 32 100.0 35 ................................ AGTAATTTGTGCCGATTCCAAGCGTTTCATATTTG 1479 32 100.0 36 ................................ AGAGTTGTATATCGCGCCCGCTGTCGTCGAGATGTA 1411 32 90.6 33 ...........TA..........A........ TGCTATGGTAAAGACGAAACTTGCAGTTTGTGA 1346 32 71.9 0 ACT...TA...A...CA...C........... | ========== ====== ====== ====== ================================ ==================================== ================== 5 32 92.5 35 GTCGCACTCTACGCGAGTGCGTGGATTGAAAG # Left flank : CGCCCGTTGCCTTGTTGCAACTGCGGCGGTGTCGCATCCTACGCGGATGCGTGGATTGAAAGCTCCTAGCGCCCGTTGCCTTGTTGCAACTGCGGCGGTGTCGCATCCTACGCGGATGCGTGGATTGAAAGCTCCACAAAGACAAATACTGCCGAGCCTAACACGTCGCATCCTACGCGGATGCGTGGATTGAAAGCAGAACTTACTGCGCAACATGCCGCGACCTCTGATGTCGCATCCCCATGATATAGATTCAACTAGTCAATAAGAGAGAGAAAGTAGGCTTTCGGTCGCTAATCAAATGGGACTGAAAGCCTTTTGTATTGCAGACTGGTGCGGATCGGAAGCTCACATAAAAAACCTGGGAGATCCGCACCCCGCATAAAATAAGGCTTTTCGGAAATTTTAGGGTGAAAACTCCCCTAAAATATGGTACATTTAAACCGATCCGCACTAAAGCGTTTGCAAATGCTTGCTGTGCAAGGGCTAAATATGCGGGC # Right flank : TCCATCAGTCCTTGTCTTTGCAACAGAGTCAGTTCGTCAATAAAAGATTAAATGAGCAGATAATGCTTTTTTTGGTTGCTAACCAATGGAGACTGAAAGCCTTTTTACATTTCGGACTGGTGCGGATCGGAAGCTCACATAAAATCCCCGGGAGATCCGCACCTCGCATAAATAAGGCTTTTCGGCAATTTCGGGGTGAAATTCCCCCTGAAATATGGTACATTTAAACCGATCCGCACTAAAGCGCTTGCAAATGCTTACTGCGCAAGGGCTAAATGTGTGGGCTGTCGCATCCTACACGGATGCGTGGATTGAAAGAACATTCTCAAGACCTAGCAACCTTTTCAGATTATCGGTCGCATCCTACACGGATGCGTGGATTGAAAGCAGCCATTGCAGCCATGCCCCTACCGCTCCCTGCAGTCGCATCCTGCGCGGATGGAAAGCGCTCTGGCAAAGACGAATCCGGCAGTACGCGAACTGAATACTAAGCGCGTGCA # Questionable array : NO Score: 8.68 # Score Detail : 1:0, 2:3, 3:3, 4:0.62, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACGCGAGTGCGTGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.40,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,10.15 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 2153-1918 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOSE01000015.1 Paenibacillus montaniterrae strain J40TS1 sequence15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 2152 32 90.6 37 ...........T..T...A............. CTCCTAGCGCCCGTTGCCTTGTTGCAACTGCGGCGGT 2083 32 100.0 37 ................................ CTCCTAGCGCCCGTTGCCTTGTTGCAACTGCGGCGGT 2014 32 100.0 33 ................................ CTCCACAAAGACAAATACTGCCGAGCCTAACAC 1949 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 4 32 97.7 36 GTCGCATCCTACGCGGATGCGTGGATTGAAAG # Left flank : CGTTCCAGTGGAGCCAACGAACGGCAGGTTTTCTGGTACATCACGCTTCCTTTGACCTATCGCTCATTAGTTTCCGCCTATATTCTCGGCTTTGCCCGCAGCCTTGGCGAATTCGGCGCCACATTAATGATAGCAGGAAATATTCCAGGCAAGACACAGACCATACCTACCGCTATATTTGTAGCAGTTGATGCCGGCAACACAACGATGGCATGGGCCTGGACGGGGGCGATCATTGCGATTTCATTTATACTGCTGCTTCTGACGAGACAGAAAAACTAACAAGCAGCAATTGATTGCTGAATAGATTCATAATAAAATGCGCACTGGCTTGGTGCGGATCGGAAGCTCACATAAAATCCCCGGGAGATCCGCACCTCGCATAAAATAAGGGTTTTCGGCAATTTCAGGGTGAAATTCCCCCTAAAATGTGGTACATTTAAATCGATCCGCACTAAAGCGCTTGCAAATGCTTGCTGTGTAAGAGAAATGTGTAGGCT # Right flank : CAGAACTTACTGCGCAACATGCCGCGACCTCTGATGTCGCATCCCCATGATATAGATTCAACTAGTCAATAAGAGAGAGAAAGTAGGCTTTCGGTCGCTAATCAAATGGGACTGAAAGCCTTTTGTATTGCAGACTGGTGCGGATCGGAAGCTCACATAAAAAACCTGGGAGATCCGCACCCCGCATAAAATAAGGCTTTTCGGAAATTTTAGGGTGAAAACTCCCCTAAAATATGGTACATTTAAACCGATCCGCACTAAAGCGTTTGCAAATGCTTGCTGTGCAAGGGCTAAATATGCGGGCGTCGCACTCTACGCGAGTGCGTGGATTGAAAGATCGAATGTTGCATTGATGTTAGCCAATTACTTCAGTCGCACTCTACGCGAGTGCGTGGATTGAAAGAGTAATTTGTGCCGATTCCAAGCGTTTCATATTTGGTCGCACTCTACGCGAGTGCGTGGATTGAAAGAGAGTTGTATATCGCGCCCGCTGTCGTCGA # Questionable array : NO Score: 8.55 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.20,-9.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 458-150 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOSE01000018.1 Paenibacillus montaniterrae strain J40TS1 sequence18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 457 32 100.0 35 ................................ CTCAACCTCGAACACAGTTCCTAAAATATAGTCCG 390 32 100.0 39 ................................ CGCACGATTCGTCTACTTTCAGTCGTTTGGTACGAAAGT 319 32 100.0 38 ................................ TGCATATTTGGAACTTTTAAATGACATCTATGGCCAAG 249 32 100.0 36 ................................ CTTCCCCTTCTTGAAGGAACAAGTACACTTGATAAG 181 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ======================================= ================== 5 32 100.0 37 GTCGCATCCTACGCGGATGCGTGGATTGAAAG # Left flank : GATCGAGGGAGATGGAAAAACACGACTGCGTCGAGTATCAAAGCTATGTCAAAACTATGGTCAGCGTGTACAGAACTCAGTGTTTGAATGTCATATAGACGCTGCGCAGCTAGCGAGTTTGAAGCATCAGCTCATTGACATCATTGATCCTGAGAAAGACAGCTTGCGTTTTTACCAGATTGGTAATCAATATAAAAATAAAGTCGAGCATATAGGGGTTAAGAAATCATTAGATTTGGATTCACCGTTGATTTTTTAGCTTCTTTGTAGGACGCCAGGCTTTCAGTCGCCAATTGAGATGGTGGCTGAAAGCCTGTTTGCCTTGCAGGTTGGTGCGGATCGGAAGCTCACATAAAAACCCTGGGAGATCCGCACCCCGCATAAAATAAGGGTTTTCGGCAATTTTAGGGTGAAATTGTCTCTGAAATATGGTACATTTAAACCGATCCGCACTAAAGCGCTTGCAAATGCTTGCTATATAAAGGCGAAATGTGTGGGCT # Right flank : GTACGTCTGAACGAGATAGCCGATTGGAGTGCTACGATAAAAATGCAGTCGCAAAACCCCCTCATATGAAATAGAATGAAAGCTGACGAGGGAGTTGAGCACGAATGAAAAGATATGACAAAGCATTTAAAGAAGAAGCCGTAAGATTAA # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.20,-9.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 11389-11018 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOSE01000018.1 Paenibacillus montaniterrae strain J40TS1 sequence18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 11388 32 100.0 37 ................................ AATCCCTCCATATTGCACATTTGGAGTGCCATCAATC 11319 32 100.0 36 ................................ ATAAGCTGCGTTGCACTTATCCACGGGCATATGAGC 11251 32 100.0 35 ................................ TAAGCTCCTTTGGTGATGCTCCTGCAGAAATTGCA 11184 32 100.0 36 ................................ ATCGCGAAGCACCATGCGCTCCACGAATGAAATGGT 11116 32 96.9 35 ...........T.................... TGTCGTAGCGGTTAAACCTTCAACCTTGTAAGTGC 11049 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 6 32 99.5 36 GTCGCATCCTACGCGGATGCGTGGATTGAAAG # Left flank : ACTGGCAATACCGCATTGTATCGATAATTACTTGCCATCCTTACTGCTAGAGTCCGAGCAGCCAGAACTGGCAAGCCTTATTGCGCCGCGCGGACTGTTTATTGAAGCAGGTGAGCTCGACAGGATTTTTCCGATTGCTTCAAGCAAGCAGGCAATTGCATATTTGCAGCAAGCTTATGAGGCGGGGGGATATGCTGAACAGTTTGCTTATCATATCCATGAAGGTGGACACGAAATCTGTGGGGCACGGTCGTTCCAGTGGATGTATGAGAACCTTGCGCAGCATCTTGGTTGAAGAAGGAGTGCAGTTGCTCAAGCTGCTGCATACTCTGGTGCGAACCCCAAGTGCACATAAAATTCCTGGGAGGTTCGCAACACGCATAAAATAAGGATTTTCAGCAATTTTAGGGTGAAATTGCTCCTGAAATATGGTACATTTAAACCGATCCGCACTAAAACGCTTGCAAATGCTTGCTGCGCAAGGACGAAATGTGTGGGCT # Right flank : ATTTCCAGTACTGTCATCTATATTCCCTTGATCGTTACATTGCACTCTATATGAGTGCATGGATTGAATGGAGAACCGTAACTTGCTGCGCCCTAATGTCGCATCCCCGTGATATAGATTCAACTTGTCAATAAGAGAAAGAAAGTCGGCTTTCGGTCGCTAACTAAATTGGCGGCTGAAAGCCTTTTGTATTGCAAGGTGGTGCGGGTCGGAAGCTCACATAAAAACCCCGGGAGATCCGCACCCCGCATAAAATAAGGGATTTCGGAAATTTCAGGGTGAAAAAGCCTCTGAAATATGGTATAGTTAAACCGATCCGCACTAAAGCGTTTGCAAAGCCTTGCTGCGCGAGGGGAAAATGCGGGAGCGTCGCATCTTACGTAGATGCGTGGATTGAAAGTATCAAAATTTGGCATAGTACCTGCTTCCTCCCCGTCGCATCTTACGTAGATGCGTGGATTGAAAGTCTTGCCATTGACGCTGCAAGTGGGTCTGGACCA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.20,-9.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 15-450 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOSE01000027.1 Paenibacillus montaniterrae strain J40TS1 sequence27, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 15 32 100.0 35 ................................ TTAGATGCAGTATGTCGGCTTCGTCTAGGCGAATA 82 32 100.0 36 ................................ GTTGACGCTTTAATTTGCTCAGCTAACGACAGTACG 150 32 100.0 35 ................................ TGAGCAAACCTACCATTGTTTTTTAATTGAATAGT 217 32 100.0 36 ................................ AAGCCAATCGGCAAGGCCTTTACTTGGATCGGCAAA 285 32 100.0 36 ................................ ATCGGTAGTGATTCCGAAGTTTTTCATCATGGTGTC 353 32 93.8 34 .......................A...A.... GTTCCGATTAGGAACAGACAAGGAACTGGGTCAG 419 32 78.1 0 A....T.......A.A..A..CA......... | ========== ====== ====== ====== ================================ ==================================== ================== 7 32 96.0 36 GTCGCATCCTACGCGGATGCGTGGATTGAAAG # Left flank : ATCTTTGTCCACCTG # Right flank : GTCCATCAGTCTGCGCTACAGAACTAACTCGTCAATAAAAGATTAAGTAAGGCAAGGCTTTCAGTCGCCAATCGAGATGGTGGCTGTAAGCCTGTTTGCCTTGCAGGATGGTGCGGATCGGAAGCTCACATAAAAACCCAGGGAGATCCGCACCTCGCATAAAATAAGGGTTTTCGGCAATTTTAGGGTGAAATTGTCTCTGAAATATGGTACATTTAAACTGATCCGCACTAAAGCGTTTGCAAATGCATGCTATGTAAGGGCAAAATGTGTTGGCTGTCGCACTCCATGCGAGTGCGTGGATTGAAAGTTGATTGATAATAAGGTGTTTTTAACGTTCAAAGTCGCACTCCATGCGAGTGCGTGGATTGAAAGTTAAGGGCCTACATCCCAACTATGCGGGAATATGGTCGCACTCCATGCGAGTGCGTGGATTGAAAGTTAAGGGCCTACATCCCAACTATGCGGGAATATGGTCGCACTCCATGCGAGTGCGTGGA # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.00,-9.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [13.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 729-1217 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOSE01000027.1 Paenibacillus montaniterrae strain J40TS1 sequence27, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 729 31 100.0 34 ............................... TTGATTGATAATAAGGTGTTTTTAACGTTCAAAG 794 31 100.0 35 ............................... TTAAGGGCCTACATCCCAACTATGCGGGAATATGG 860 31 100.0 35 ............................... TTAAGGGCCTACATCCCAACTATGCGGGAATATGG 926 31 100.0 33 ............................... TCCCAACGAATACTCCGAAGTTACCTTGATACG 990 31 100.0 35 ............................... TACGTAACAGAGGTATAATATAATATTAGCCAAAG 1056 31 100.0 34 ............................... GTCAAATGTATAGGCTCCGATTTCTCGGCTTAGG 1121 31 96.8 35 .............................G. TCGGTAATGCCGCTGCGCTGCAGCATATGCTCTTG 1187 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== =================================== ================== 8 31 99.6 35 TCGCACTCCATGCGAGTGCGTGGATTGAAAG # Left flank : GCGGATGCGTGGATTGAAAGAAGCCAATCGGCAAGGCCTTTACTTGGATCGGCAAAGTCGCATCCTACGCGGATGCGTGGATTGAAAGATCGGTAGTGATTCCGAAGTTTTTCATCATGGTGTCGTCGCATCCTACGCGGATGCGTGAATTAAAAGGTTCCGATTAGGAACAGACAAGGAACTGGGTCAGATCGCTTCCTACGAGAATACGCAGATTGAAAGTCCATCAGTCTGCGCTACAGAACTAACTCGTCAATAAAAGATTAAGTAAGGCAAGGCTTTCAGTCGCCAATCGAGATGGTGGCTGTAAGCCTGTTTGCCTTGCAGGATGGTGCGGATCGGAAGCTCACATAAAAACCCAGGGAGATCCGCACCTCGCATAAAATAAGGGTTTTCGGCAATTTTAGGGTGAAATTGTCTCTGAAATATGGTACATTTAAACTGATCCGCACTAAAGCGTTTGCAAATGCATGCTATGTAAGGGCAAAATGTGTTGGCTG # Right flank : AACCCGCGATGATGCGCATATACGTA # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCACTCCATGCGAGTGCGTGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCGCACCCCATGCGGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.20,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 481-976 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOSE01000020.1 Paenibacillus montaniterrae strain J40TS1 sequence20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 481 32 100.0 35 ................................ CGATAAAGAGTTATATCGCTTCCAGCCATTATGCA 548 32 100.0 35 ................................ TTTTTTCTGCTTGATTCAAATTTAAACAGAAAAAC 615 32 100.0 36 ................................ ACACGTCTGTTACCGACGAGTCCTACGATATCCTTG 683 32 100.0 37 ................................ GCTATCTCGCGCCCTCGCCCAAGCAGTTGTTGTTAAC 752 32 100.0 34 ................................ TCATGAGCCATAAAAGCCAGTTGTTTTAGCTCAT 818 32 100.0 37 ................................ ATCAATTTCATATTTGCGTGTGACAGGATTGACTTTT 887 32 87.5 23 .......T..................C.C.T. TTATTAAAGGCGCTCGGCGCAAA ATC [913] Deletion [942] 945 31 75.0 0 .........-.T...CCC..A.....CA.... | C [951] ========== ====== ====== ====== ================================ ===================================== ================== 8 32 95.3 34 GTCGCATCCTACGCGGATGCGTGGATTGAAAG # Left flank : TTAATCTTACGGCTTCTTCTTTAAATGCTTTGTCATATCTTTTCATTCGTGCTCAACTCCCTCGTCAGCTTTCATTCTATTTCATATGAGGGGGTTTTGCGACTGCATTTTTATCGTAGCACTCCATACAGCCTTGCGTAGCACTCCATGTGAGTGCGCGGATTGAATACAGAACTTTACTTCACAACTTGCCGCGCCCCTGATGTCGCATCCCCGTGATATAGATCCAACTAGTTAATACGAGAGAGAAAGATGGAAGACTTTCGGTCGTTAATCAAATGGTGGTTGAGAGCCTGTTTGCTGTGCAGGCTGGTGCGGATCGCAAGCTAACATAAAATCCCCGGGAGATCCGCACCACGCGTAAAATAAGGATTTTTTCCAATTTTGAGATGAAATTGTCTCTAAAATATGTTACATTTAACCCGATCCGCACTAAGGCGCTTGCAAATGCTTGCTGCGCAAGGGCGAAATGTGCGGGCTG # Right flank : GTACGTCGGTCTTCCTGCCTCAGCGGTAAACGCCCGTCACACTCCACGCACTTGCACGGAGTGAAATTACCACCAATCAGAGGTCCAAAAAATGAGAGACAAAATTAACGAACTCCTTGATCAACTGCCAGAAACTGATCTGGAGCAGGTATATGCTGTTGTGCGGCACATCTACTCTAACCATCAATACCGCAGCAATTTAACAAGCAAAGGTGTTGTGATAACGCCACTGTATTATGAGGCTGATCATATTAAAAGCAAGTGGGATTTATATTTTGCGCATGATGTTACAGTAGAAACGATGCGGAGAATCTACTACGACCAATTTCGCTGGCATATTTACAGCTACAAGATCAAGCCTTGCCTGGAGAATGAGGAGGCAAGAGCAGCATTTGATGCAATAACGGATAAGCATGAGCTGTATGTCATGTACCAAAATCGATCTGAGCTGTTTAAGTTCAGCAATGCGCTGAAAGTGACAGCAAGCGATTTTGACAGGC # Questionable array : NO Score: 8.94 # Score Detail : 1:0, 2:3, 3:3, 4:0.76, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.00,-9.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 5905-6753 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOSE01000020.1 Paenibacillus montaniterrae strain J40TS1 sequence20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ========================================= ================== 5905 32 100.0 34 ................................ ATCGGTGAACCATTGGCGGTCAAAGTCGGCCAGT 5971 32 100.0 34 ................................ TAGGCTAATGTCGGGTTCGATGTCAAATCCCCAA 6037 32 100.0 36 ................................ AGCTTCAGTTGCCACAAATGTTCACTCCAATCGAAA 6105 32 100.0 35 ................................ CTATGGGTAGTGAAAGTCCATTTACTGATATTTTG 6172 32 96.9 37 .......................A........ CTTGCACCTCGGCGTCAGGTACTTGCTCCACTTCTGG 6241 32 100.0 34 ................................ CTCCTATCGGCACTTTAGCTTTTGTAGATCCTCT 6307 32 100.0 36 ................................ CATTAAAGCGGCATTGCGATTTAAGAATGTAGAAGA 6375 31 93.8 37 .......-..................A..... TTGAAGCTTTAAACAAGAAGGAAGATGAGAAGAACGG 6443 32 100.0 39 ................................ CTCCAACTGGTTCCATCGTTCAAGACGGGGTACGCAAGG 6514 32 100.0 34 ................................ AACAGCATTAGGTAGCGATTGGAATACTGCTGGC 6580 32 100.0 37 ................................ CTGCAGGCGGTGGCAGCTCAATTGTCGAAAAGCAAGT 6649 31 87.5 41 .........-.T...AG............... GCCCAATACTCCGTTAGGCCGCGGCACTCGAACATATTATA C [6655] 6722 31 87.5 0 .........-.T...AG............... | C [6728] ========== ====== ====== ====== ================================ ========================================= ================== 13 32 97.4 36 GTCGCATCCTACGCGGATGCGTGGATTGAAAG # Left flank : TAAGCAAGCTAGCTCGACTAGTAGAAGCCGTTTCCCGCCGTTTGCAGGTACAGGAGCGCATTACGTCACAAATCGCAAATGTACTGGAAGAAGAGCTTTCCCCACAAGGCGTTATCGTCGTCGTAGAAGGCGAGCATCTCTGCATGTGCGCACGCGGTGTGAAAAAGCCAGGCAGCAAAACAATTACAACTGCAACGAGAGGCATATACAAGGAAGACGCGGCTTTAAGAGCTGAGTTTATGCAGTTGATTAAATAAGAATAAGCAATTAAGAAAAAGGCTTTCGGTCGCTAACCACAATGGCGGCTGAAAGCCTTTTTGCTGTGCAGACTGGTGCGGACCGTAAGCTCACATAAAATCCCTGGGAGATCCGCACCTCGCGTAAAATAAGGGTTTTCGGCAATTTCAGGGTGAAAATGGACTTGAAATATGGTATAGTTATACCGATCCGCACTAAAGCGTTTGCAAATGCTTGCTGTGTAAGGGCAAAATGTGCGGGCT # Right flank : GTAGCGATGACCATTATTGGAAGCAAGATAATAGAAGTTAACCCAGATAATTGATAAAGAAAAAGACAGCTTGCGATTTTATCGATTGGGCAGTAACTACAAAACCAAAGTAGAGTATATTGGAGCCAAGCCATCGTTAGATTTAGAAGGGCCTCTTATTTTCTAGTGGTGCGAACCCCAAGCGCACATAAAATCCTTAGGAGGTTCGCACCCCGCATAAAATAAGGGTTTTCGGTAATTTTAAGGTGAAAATGTCTCTGAAATATGGTATAGTTAAACTGGTTCGCACTAAAGCGTTTGCAAAGCCTTGCAGCATAAGGGCAAAATGTGCGGGCGTCGCATCCTACGCGGATGCGTGGATTGAAAGGTTTATCGAATACGAACCGTCGTCGTGCGCAATTGTCGCATCCTACGCGGATGCGTGGATTGAAAGCTGAACGACATCGTGCGCTACGAGAACCCGGTCAATGTCGCATCCTACGCGGATGCGTGGATTGAAA # Questionable array : NO Score: 9.13 # Score Detail : 1:0, 2:3, 3:3, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.00,-9.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 7088-7590 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOSE01000020.1 Paenibacillus montaniterrae strain J40TS1 sequence20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 7088 32 100.0 34 ................................ GTTTATCGAATACGAACCGTCGTCGTGCGCAATT 7154 32 100.0 36 ................................ CTGAACGACATCGTGCGCTACGAGAACCCGGTCAAT 7222 32 100.0 37 ................................ GGAAGTTGGTATAAGTATAGCTTGTCCCGTAATGCGA 7291 32 100.0 35 ................................ GGGTTAGACGGGATGCCGCTAATTTCAAAAGCAGA 7358 32 96.9 33 .............T.................. ATCGACAACCAGACTAAGTTGCCTGACTTGGAA 7423 32 100.0 35 ................................ CCGAATGATCGTGCATTTATGCTGCAGATGCTGAC 7490 32 100.0 37 ................................ TGCATTTTGCGGCGCGCTCTCTCACCGTTTGTGCTGG 7559 32 84.4 0 .........C.TT.........A....A.... | ========== ====== ====== ====== ================================ ===================================== ================== 8 32 97.7 35 GTCGCATCCTACGCGGATGCGTGGATTGAAAG # Left flank : CTACGCGGATGCGTGGATTGAAAGCTGCAGGCGGTGGCAGCTCAATTGTCGAAAAGCAAGTGTCGCACTCCATGCGAGTGCGTGGATTGAAAGGCCCAATACTCCGTTAGGCCGCGGCACTCGAACATATTATAGTCGCACTCCATGCGAGTGCGTGGATTGAAAGTAGCGATGACCATTATTGGAAGCAAGATAATAGAAGTTAACCCAGATAATTGATAAAGAAAAAGACAGCTTGCGATTTTATCGATTGGGCAGTAACTACAAAACCAAAGTAGAGTATATTGGAGCCAAGCCATCGTTAGATTTAGAAGGGCCTCTTATTTTCTAGTGGTGCGAACCCCAAGCGCACATAAAATCCTTAGGAGGTTCGCACCCCGCATAAAATAAGGGTTTTCGGTAATTTTAAGGTGAAAATGTCTCTGAAATATGGTATAGTTAAACTGGTTCGCACTAAAGCGTTTGCAAAGCCTTGCAGCATAAGGGCAAAATGTGCGGGC # Right flank : GACACAAGCACATCCCAATAGACACCTACTCTCGTTGCCATCTCACTCTTGTAGTTGGCGGAAGAGTCAGGTGTCATTTTTTATACAACGAGCATAAAAGGATTGACAATCCAACTAGGAATGATTTATATTATTATTCGTAAACGTTACGAATATATGTTGTGAAGCTGATACATATTGAACGATAAAAGGAGCGGACGCTCTTTTTTTTATCGTAATTTAATCGTAATCATTACGTAATTTGATTGTGTCTAGTAATTAGAAAGGAAGCAGCCATGACGCATCGACAGTATATAAAGCTCGCTATTCCTCTTATTTTATCCGGCATTTCGGTGCCGCTGCTGGGTGCAGTCGATACTGCGGTTGCAGGTCGGTTGGAGCATCCTGCTTATATTGGAGGAATTGCTGTAGGCAGTCTTATTTTCAATATTCTTTACTGGCTGTTTGGTTTTCTAAGGGTAAGCACGACTGGTTTTACCGCGCAAGCGGCAGGCGCACAG # Questionable array : NO Score: 9.15 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.00,-9.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 21018-21254 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOSE01000020.1 Paenibacillus montaniterrae strain J40TS1 sequence20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 21018 32 100.0 35 ................................ TATAGATTCGATGTCATCGGTTTGAAACCAATCGT 21085 32 100.0 38 ................................ CGTGAACGACTGTACCCAGTTGAAAAACAAAGGATGTA 21155 32 100.0 36 ................................ TTAGTGCCAATCTCGACGCTCAAATTGTCGCAGCAT 21223 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ====================================== ================== 4 32 100.0 37 GTCGCATCCTACGCGGATGCGTGGATTGAAAG # Left flank : AGTTCGATAGACACGTAGACTCTGTTTTGAATCTTCAGTTGAATGAAGATTCAAAACAAGAGTTGATTGATGTACAGAAAAACTTGGCTACATGGATAGAAGCAGCGAAAAAAAAGGACGGTAAAAGCTGTCTTCTACTACTTGGTGGGTTTAAGGGACTAATGCTATCGAGAGTATTTGGGGCAGAAGTATTTGAACAAAGTGCGGAAAAAAGCGCAATTTATGTTGATCGAGAAAATTCACTTCCATATGGACTTGTTCAGATTACATTGAATGATTAAGCTGTCCCGAGTTAACAGCAGGTGTGGTTTAAAAGGATGTTATTAAAAATGGTGCGGATCGGAAGCTCACATAAAATTCCTGAGGGATCCGCACCATGCATAAAATAAGGGCTTTCGGCGATTTTAGGGTGAAAATTGCTTCGTTTTATGGTAGATTTAAACCGATCCGCACTAAAGCGTTTGCAAATGCTTGCTGTGTAAGGGCGAAATGTGTGGGCT # Right flank : GATCATATTGGAGGATAACCTGAAATGAACTCAAACTCTGCTCCGTTTAAATTTGAATATTTGCCATTACTAATTCAGTTGGAATGTTGTGAGACAACTCACCTGCCCGCCTATCTTGGCTCTACCCTTCACGGAGTAGTAGGGTGGGCATTAACCTCAAACAGTAAGGCATATTCCTTTCTATTTGAAAATCGCAAATTTGGCGGGGCGAAACAGGATATTGTAAATCCGTATATTATAGAGCCGCCTAGATATCGTCCAGTCTACAAGCCCGGAGATGTCCTGAGCTTTCAACTGATCCTTTTAGGAACGGCAACTAGCTATGTGAAAGATGTTGTTGAGGCGCTTGCTAGTGTTAAACAGTTTGGGATGGGTGCGAATCGAAAGCCATTTAAATTAATCAATGTGTTGCATGGTGAGCGTTATGTGCCAATTTGGCAGGCTGGCGAGTTTTATACCAGTGCAGCCGCCAGTGTGGTACTCAGCGAAACCGTTCAAGA # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.10,-9.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,1.01 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 5 22340-22838 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOSE01000020.1 Paenibacillus montaniterrae strain J40TS1 sequence20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 22340 32 100.0 34 ................................ AATTACGAAATTGGTTCTACATCCACTACCACAG 22406 32 100.0 33 ................................ AGAATAATTAGGGAAACTTCACAAGACCGTATC 22471 32 100.0 38 ................................ AATTTGTCCAGTGGAGTGTATTCATGAATTGAAAATGG 22541 32 100.0 35 ................................ ATCCCAAATTAGGCACACGTAAATTGCATAAAGGC 22608 32 100.0 38 ................................ CACCGCTGTAAACCATGACAGCAATCGGAAGCTCGAGC 22678 32 100.0 33 ................................ ATGTGGAATAGCATCGGTAGCAAGCGGGCTAAA 22743 32 96.9 33 .G.............................. ACATTAAAAGCTGCTGCGCCAGCGTAATTGGGG 22808 31 84.4 0 .....................AA..-.A...C | ========== ====== ====== ====== ================================ ====================================== ================== 8 32 97.7 35 GTCGCATCCTACGCGGATGCGTGGATTGAAAG # Left flank : CGATCATTCGTAACACCACGAAAAGAATAGAAATGCTGACTGAGCGCTACGGGGGCTATTGCGATTCCAGTAGCATTCCCTCATTAATGGATCAATCGGCAAATGTAATTGAACGTACTTTAGACGTATATGTAACTCAAATTCATCGCTATTCGAATCGCAGGGAAGAAAAGATGGATATGAGCGGTCTGCTAGGCGTGATGACGTTTGAAGGAGAGCTCTCTGCATTTACTCCTTGGCTAAAAGCTGCTCGAAAACTGCATATCGGGAGAAATACAACCTTTGGTTACGGTCAGCTAGATGTCATCTTTGGATGAAGATTTTTCATGCAGGTGCGGATCGGAAGCGCACATAAAATCCCTAGGAGATCCACACCTCGCATAAAATAAGGGTTTTCGGCAATTTTAGGGTGAAAATTGCCACGATTTATGGTACATTTAAATCGATCCGCACTAAAGCGTTTGCAAATGCTTGCTGCTTAAGGGCAAAATGTGTGGGCT # Right flank : CAATGACGATAGTGGGAACATCCCAAGCATACGGCAGTATTCCATATGAGTACTTGGGTTGTGGTCAATAAAAGATTAAATGAGAATCAGGCTTTTAGTCGCTAACTGAAAATGTGAGGCGATTGAAAGCCTATTTTCATTGTAATCTGGTGCGGATCGGAAGCTCACATAAAATCCCTAGGAGATCCGCACCCCGCATAAAATAAGGGTTTTTGGAAATTTTGGGGTGAAAATATCCTCGGTTTATGGTACATTTAAATCGATCCGCACTAAAGCGTTTGCAAATGCTTGCTACGCAAGAGCAAAATATGTGGGCTGTCGCACTCCATGCGAGTGCGTGGATTGAAAGGAGTCTTTCGAGATTAATTCACTTATCAACTCTTAGGTCGCACTCCATGCGAGTGCGTGGATTGAAAGTTGGGCGCAATCCAATCAATCGAAATGGAGTTGTCAAGAAAAGTGCAGTTCGAAAACACACTCATGCAGAAACCCTCATTGTC # Questionable array : NO Score: 9.15 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.00,-9.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //