Array 1 182221-180059 **** Predicted by CRISPRDetect 2.4 *** >NZ_PHRJ01000005.1 Klebsiella pneumoniae strain K4 KP-K4_NODE_5_length_431196_cov_56.9595_ID_545, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 182220 29 100.0 32 ............................. GAGCAGGCACCCGCCGCAACGACGAAGAGCGC 182159 29 100.0 32 ............................. AAATCAGCCAGCACCACGATTCTGGGAAATTT 182098 29 100.0 32 ............................. ACAGGCTTACCCGTATTGAGACGGTTGCTGAA 182037 29 100.0 33 ............................. GAAACCCCATCAGATGACCCTCCCCATGTTGGC 181975 29 100.0 32 ............................. TTGCCTGGTCTGCTTGGTGATGATCCGTGGTA 181914 29 100.0 32 ............................. TACAGAACGACTGAGGCGGCGTGTATTGCATA 181853 29 100.0 32 ............................. GATCTTAACTCTATTGCCAATGGCGCAATTCA 181792 29 100.0 32 ............................. GGCGATGCGCGCTCTGCTGGCTATCGGTAAAA 181731 29 100.0 32 ............................. AATGCAGCAACCGGCAAATATATCGCCGGTAA 181670 29 100.0 32 ............................. GGGCTGCCGCACGCCTGGGACGAGTCGAGCCC 181609 29 100.0 32 ............................. TGACCCTGTTGATTTTGTTCCAGGTAATACGT 181548 29 100.0 32 ............................. TTAACCTCGTCGTTCTGGTTTCCGCCCAGGAT 181487 29 100.0 32 ............................. GAACCTGAATTCGAAGGGTGGGTCATCCTTCC 181426 29 100.0 32 ............................. GGACCCCGAGCGACCCGGTCACCCTCCGACCT 181365 29 100.0 32 ............................. CCGTCGAACGGCGGTTATATCCATCTTGAGTC 181304 29 100.0 32 ............................. ACCGATCCCACAATTGCGGCGGTTGAGATTGA 181243 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 181182 29 100.0 32 ............................. CCGATTGTCTGGCGGTCGAGCGCCATTTGCTC 181121 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 181060 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 180999 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 180938 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 180877 29 100.0 32 ............................. CCCTCCGCTTTCAGGGTGTGGCTGATATCACC 180816 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 180755 29 96.6 32 .............A............... TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 180694 29 100.0 32 ............................. ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 180633 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 180572 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 180511 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 180450 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 180389 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 180328 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 180267 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 180206 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 180145 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 180087 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================= ================== 36 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCCTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : GTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 173926-175046 **** Predicted by CRISPRDetect 2.4 *** >NZ_PHRJ01000008.1 Klebsiella pneumoniae strain K4 KP-K4_NODE_8_length_223134_cov_52.439_ID_1905, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 173926 29 93.1 32 ............TG............... TAACTTTACCCCGGATCCTGATGAACCTGTAC 173987 29 93.1 32 ............TG............... TCGTGTTGTCCACGGTTACCCGCTGGCTGGAA 174048 29 100.0 32 ............................. AGGTATTTGACCTCATCCAGAAAGGCACAGAC 174109 29 100.0 32 ............................. GCACCCTCACGGATACCTTTTGCACAGTGTTA 174170 29 93.1 32 ............TG............... TTACCAATGGGGAAAAATCTTCATTTGTAAAT 174231 29 96.6 25 .....T....................... AACATCAGTGGAAATCCACTGCGGC Deletion [174285] 174285 29 96.6 32 ......T...................... CGAAAACGGCAACCTTCATAAAAACGTCTTTT 174346 29 93.1 32 ............TG............... CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG 174407 29 100.0 32 ............................. AACAATTTGAAGTTTCTGCGCCAGGTCGTTTC 174468 29 100.0 32 ............................. AGCAGTTCGAGGAATAGTGACAGGCAGTGCAG 174529 29 93.1 32 ............TG............... TTAATGTTTTGTTAATTTATGAGTGTGGTGAT 174590 29 93.1 32 ............AC............... AGCAAATCGAAAATCCGGCTGTTTGAAAAATG C [174595] 174652 29 89.7 32 .............T.A............C CATGAGCCTGCGCACTCTGACGCGCACCTGCT C [174657] 174714 29 100.0 32 ............................. TGAGGCTGCTGACGGAGAATTGGGACCTGTTC C [174719] 174776 29 96.6 32 ..............C.............. CCGACCCGGTGCCCAGGAGAACTGGCTGAATA 174837 29 93.1 31 .............G.A............. TTCCCTGCACTAAGACGCTGGTGGTCGCCAC 174897 29 93.1 32 ...C......................T.. CCGGTTCGGATTTTGCGAAACAGGTGCAGGGC 174958 29 96.6 32 .............T............... GGCATGAGCGAGAACCACTGCGAGAGTGTGGT 175019 28 86.2 0 ..........A.....T.....-.....A | ========== ====== ====== ====== ============================= ================================ ================== 19 29 95.1 32 GTATTCCCCCCGCATGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : ACATAGAAACCGCAATGGTGGGGCTTTTGTCATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCCTGGATAACCCACTTTCTGCCATCTTTTGTCTCAAAGGGTACTCCCACCGTGGCAGGTGGGAGGGGAATTTGAATTGACGCGATAGCGTTAAAGGAACATTTAGCCGCGCTGGTGCTGAATGTAGCGCTTTACGACTTCCAGCGGTGCTCCACCACATGACCCAACAAAGTAGCTGCGTGACCAGAGAACAGGCTTACTGTACGCCTCCCGCAAATCCAGAAATTCATTCCGTAGCCGCCGACTTGTGACGGCTTTCAGGCTGTTAACCAGTTTTGACAGTTGCACAGTTGGTGGGTATTCGACCAGCATGTGAACAAACAGTTTTAAACAGAACCAAAGCAGACTGGCAAGGTTACAGCGCCAGCTTGCCCGTAAAGTGAAATTCAGTGCGAACTGGAAGAAGCAGAAAGCAAGAA # Questionable array : NO Score: 5.37 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.38, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Alternate repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //