Array 1 343972-341728 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR778300.1 Thermococcus sp. 2319x1 strain Essen chromosome 1 Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================================== ================== 343971 30 100.0 37 .............................. TGGATGAATAGAGAATTTATAGCCCAGCAATCTCTTG 343904 30 96.7 38 .................G............ TTCTTGAATACAACGTTTCCGAGACCGTCCTTAAGGGT 343836 30 96.7 38 .................G............ TGATTAGAGAAATATCCTCATCGCTGAGCTCTTCCACA 343768 30 100.0 37 .............................. CAGACTAAAAAGTTAATATCTCAACTCCTCATAAGAG 343701 30 96.7 38 .................G............ CATAGGTCTCAGCAAAGCAATAACTCATCATATACCCC 343633 30 96.7 44 .................G............ CCGAGCACTGGCGCGAGGGTTGGGGAACTGTCGATAAGACGGAA 343559 30 96.7 39 .................G............ TATAAGCGATTTATTTCGATGTCAGTGGTTTTAACGATG 343490 30 100.0 38 .............................. ATCGGGTTATATGGAGGTGGGGTGAGTTGAGGAAAAGT 343422 30 100.0 36 .............................. ATGCTAATGGCTATCCAGTAAAGATTGCCAACCAGG 343356 30 100.0 42 .............................. GTTACAAACCTCAAGCCCTCATAACCTTTCAATTCTTTTTGA 343284 30 100.0 38 .............................. AAAAGTATCAAGAAGTAATTGAACCTGAACCTAAAGAG 343216 30 96.7 38 .................G............ CGTTGAAGACTTCTAAGCCTTTTGCCGGTTCCCTAAGA 343148 30 96.7 41 .................G............ AATAGGGACGGCAAAACGGGATGTCTTGACACTCTGGAAAG 343077 30 96.7 40 .................G............ AAGTATACACGGATGAAGGGGATGAGTCCCCCTATCATGT 343007 30 96.7 45 .................G............ ATGAGATAACACTTCCGTCTCCGGGGTAAAGGAATAAATAGTCAA 342932 30 100.0 40 .............................. ATCTGAAACTGATCACTTCTTTGGCCATGCGACCGCCCCC 342862 30 100.0 39 .............................. AAATTCCCCCACTTGTCTCTCGTGAGGTCGATTTCTTTC 342793 30 100.0 39 .............................. TATCACTGGACCATCGGGTATAAGTGATGATCCGTCCAG 342724 30 100.0 38 .............................. TCACAGTCCCCAAATTCCCCACGTTCCGCATGCCAAAA 342656 30 100.0 38 .............................. TAGATGGTTCCATCACGCCCGTTGCCACTTTTGTCCCT 342588 30 100.0 37 .............................. TAACCTCCCTTGACGTTACTACGTTGCTCACCACGTA 342521 30 100.0 37 .............................. TTCTCACTCCCATCTCTACCTTGGAGCACACTGGGCG 342454 30 100.0 38 .............................. TGAACTCGAGCGTACCGTCTTCGTTCGTCGTGGTTTCA 342386 30 100.0 36 .............................. CTGGTGTGGTTAAAACATGGACCGACCCCCGGACCA 342320 30 100.0 50 .............................. AGGAACAAGTGGGGAGACATCGTCGACTACTCGAGGGAAGTTAATCTCCC 342240 30 100.0 38 .............................. TGTGCAACGTCATGACTCCATCTAGTGCTTCCGTCCCT 342172 30 100.0 37 .............................. CATCATCACCAGACCACCACCCTCGACCACCACCAGC 342105 30 100.0 39 .............................. ACAGCACGTATAGCACTTCCCTCGCATAGCTCTCGATTG 342036 30 100.0 41 .............................. TCGTTTTGAGAGATACGCTTGACACTTCCAGATACTTCCTC 341965 30 96.7 38 .................G............ CTGTGTATTGCTTGGTCGGGTATATAACGCAAAGTTTG 341897 30 96.7 41 .................G............ TCGGTGTTCTATCTGACAAAATCCGTGCGATTGGGGATCAA 341826 30 100.0 39 .............................. CGATTTTTGTTATATCTCCTTCGAGGACACGTGGAACAA 341757 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ================================================== ================== 33 30 98.9 39 GTTCCAATAAGACTTCAAAAGAATTGAAAG # Left flank : GAAAACTCAGAATACTTATCGAATAGTTCCGTATCACGTTTAGCTTTTCCTTTTTTGGGTTTTCTTTCTTTTTTTGTCCATATTTTGATTTTTAGCCTCTAAGGTTGCTCTGGATGTTTTTAGTAACTGAAGGTTATTATCGGACAAAGAGTTATGATATTTTGAGGTTTTTGTAACGAAATTTTTTCGGGTTTTTGAGCGAAGGCTTCTCAGGAATTCTTTAACGTTCTCTCCTCGCGGGAATTCGACCATTTTTAGTTTAAAGTGTTTTTATTAGCCTATTTTTGATTTTAGCCTTCGTTCTGTCTCTGGAAGTCTCATGAACAAGACTGGACATGGGAGAAAAAGAGTAAGTTCAGGCGAGCGAGTGTTTCGGAGTCTTTCTTAATGGCTCGAATTCGAGCCTTTTGAGGGGAGTTTTATTGGCCCTTTGACGAAAAGCTTATAAGATTCAAACCATCTAATTACTTTGCAAGGAATTTCAAGGAAAATTCACCCCT # Right flank : TAGTTTTACCGGGTCTTTTATGAATTCTTGAAATATTATGTTCCAATAAGACTTCAAAAAGCTCTTCTGCTGCAATCCCCTGCTCTGTGTCTTAAATGTTTGTCACATAGATTGGGAAAAATTTCTTGTTAATGCCCAATATAGACGGAAAATATTCCGTAAAATTTATATTCTATCGATGAATCTTCGTAATTGAGGTAGTCAAAATGTACGAGCTTATAAACTTGTCTACTGGCGAAATTATTAGGACGGGTGAAAATTTGGAGGAGCTGCTTCAAGACTTGCCAGAAGGCTTTTACGAGATAAAAGAACATGGAGAGTTTGTGAGGTTTTATAGCACAACTAAACCCGAGCACCAGTGCTGGATTTGAGACTTTTTAATTTTTTGAAAAATAACAAAAACTAAAGAACCCTTCTCAGAATTTCCCTCAGATCCTTTAGAAACTCCTCAAGGTGCTCTCTCTTTACATGGGGCATCATAACGATTCTTATGTATCCTC # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATAAGACTTCAAAAGAATTGAAAG # Alternate repeat : GTTCCAATAAGACTTCAGAAGAATTGAAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: R [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9 Confidence: HIGH] # Array family : III-B [Matched known repeat from this family], // Array 2 598739-596220 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR778300.1 Thermococcus sp. 2319x1 strain Essen chromosome 1 Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================================ ================== 598738 30 100.0 36 .............................. GCAGTCTTCAGAAACACAACAAAGGACGAACTCCTC 598672 30 96.7 37 .................G............ CTTGAGAATCTCTTCTGCAAGTGCCCTGATTTGAATT 598605 30 96.7 42 .................G............ GGGTTACACTACTGGCTCAATCAATACGCAATGTACGCTATG 598533 30 96.7 39 .................G............ AAACATTCCCATATTCAAGTTCTATATATCTTTTCGGGA 598464 30 96.7 39 .................G............ AATAGCATTGGCAACTCCAGTTAGGCCAGCTCTTATTCT 598395 30 96.7 44 .................G............ TTACTCCCGGCCCAGAACCTATCAAAATGATCTTCAATGAATGT 598321 30 96.7 35 .................G............ TCCCTTTGCAACTCCTCGCCGTTCTCTGCAAGAAC 598256 30 96.7 37 .................G............ TTAGGTCACGTATAGCTTCAGCTAGCTCACGGTCTTC 598189 30 96.7 36 .................G............ GATATTGTGTAGTAGAAAATATGGAGTTTCGCCGGT 598123 30 96.7 39 .................G............ ATTCGTCTCGGCTGGAATTGCACTTGAGTACATCATAGA 598054 30 96.7 38 .................G............ TAGTTTATGAAGAACTTGAAAAGGTTGCTTCTTTTGTG 597986 30 100.0 37 .............................. CTTTTAGATTTAGTGGGTCTTTTGTCACGTAAACTTT 597919 30 100.0 37 .............................. TTGGACAACTGAACGCACTATTTACAAAAAATGCAAA 597852 30 100.0 38 .............................. TCGACTGTGATCGGCTTTGGATTGTCTCCGAGGTACAC 597784 30 100.0 40 .............................. TGTTCTTTCAACGGCAAGAGATGATTGGAACATAGCAGAA 597714 30 100.0 40 .............................. CACGACTTCTCCCGCTACCTCATCCGCGTCGAAGTTCACG 597644 30 100.0 39 .............................. TCTTTATGGGGCCTTGTAGTGCGTGTGGCCCTTGTCCAG 597575 30 100.0 36 .............................. CAAACAAGAAGTGTGAAAGTAGCTCTGACCTACCGG 597509 30 100.0 37 .............................. TTTGTTCGATTGTTTGGTATGCATTCGCCAGAACCTG 597442 30 100.0 37 .............................. GGTCCCTTATTTTTTTGTCTAAATGCTCAAACTCCAT 597375 30 100.0 41 .............................. GCGAATCCGAGGGTTAGCATGAGAGGAAGGAGTGCTACCAT 597304 30 100.0 40 .............................. CGAGCGACCCGAACGGCTACGTGCCCGTGCCCGAGTCAGG 597234 30 100.0 41 .............................. AAACTCAACTTGAAGGGTGTGGTCCAAAAAATCGTAGACAA 597163 30 100.0 39 .............................. CTTCTGATCCAGTGTGTTGAAATCTCGCCAGGCTCGAGG 597094 30 100.0 40 .............................. TTTTCACCACCAAAGTTGTTGTAGTTTGCACCAACCCCGA 597024 30 100.0 42 .............................. CGTGAAGTTGACCGTCGTCCCGGCCGGTGCGGAAGCGTTTAG 596952 30 100.0 38 .............................. AACAGTACCAGGGGGTCAAAGGTGGCGGAGTAACCATA 596884 30 100.0 37 .............................. AAAGGTTAAGGTGGACAAAAGCGGGGATGTTTACGTT 596817 30 100.0 38 .............................. AAGTATTCGGCGAGTTCCATTGCTGCCCTTGCAACTGC 596749 30 100.0 39 .............................. ACGCTCTCTGCATACTGATTTAGCCGACCCCACACTTCA 596680 30 100.0 38 .............................. TCGTATCTCACATTATCAGCTTTATAGGAGTCTATCTT 596612 30 100.0 43 .............................. GCAGATCTGGAGATTGTCCTCAAAAAGACTTGGAGACTCCCGG 596539 30 96.7 48 .................G............ TTACCAATCTTGGGCCGGTTCTGTTGGTTCCTTTCCATCCTGCGTATC 596461 30 96.7 41 .................G............ AGCTTCATATCTCCCATAATTCGCAGCTCGCATCGTGTTCT 596390 30 100.0 41 .............................. TAAGCACTTTTTAGGGTTTCATAAGCCACCGTTTCCGGATC 596319 30 100.0 40 .............................. TCTTAAACCTCTTAACAACATTCACTATCCTAAGCACCCA 596249 30 96.7 0 .......................C...... | ========== ====== ====== ====== ============================== ================================================ ================== 37 30 98.8 39 GTTCCAATAAGACTTCAAAAGAATTGAAAG # Left flank : ACTACGTGAGTGAATAGCCGAAGATTCTTTGTATCACGTTTAGCTTTTCCTTTTTTGGGTTTTCTTTCTTTTTGTGTCCATATTTTGATTTTTAGCCTCTAAGGTTGCTCTGGATGTTTTTAGTAACTGAAGGTTATTATCGGACAAAGAGTTATGATATTTTGAGGTTTTTGTAACGAAATTTTTTCGGGTTTTTGAGCGAAGGCTTCTCAGGAATTCTTTAACGTTCTCTCCTCGCGGGAATTCGACCATTTTTAGTTTAAAGTGTTTTTATTAGCCTATTTTTGATTTTAGCCTTTGTTATGTCTCTGGAAGTCCCATGAACAAGACTGGACATGGGAGAAAAAGAGTAAGTTCAGACGAGCGAGTGTTTTAGAGTCTTTCTTAATGGCTCGAATTCGAGCTTTTTGAGGGGAGTTTTATTAACCCTTTGACGAAAAGCTTATAAGATTCAAGCCATTTAATTACTTTGTAAAGGATTTCAAGGAAAATTCGCCCCT # Right flank : CTTAAACCTCAGCACTTGAAAACGCTGGGTTTTTAAACTCCAACTCTTCTACTCTACCATATATCAAAGGAGGGTGAGAGAATGGACAAGGTCTATCTCACGTGGTGGCAGGTTGATAGGGCGATCTTCTCACTTGCTGATAGTTTAAGAGGATACAAGCCTGATGTTATCGTTGGAGTCTCGAGGGGTGGACTTATCCCGGCGGTAAGGCTCAGTCACATTTTAGGAGATGTTGAGTTCAAGGTAATCGACGTAAAGTTCTACAAGGGTATTGACGAAAGGGGAGAAAAGCCCACGATAACGATCCCGCTCCACGGGGACTTAAAAGGAAAGAAAGTCGTAGTAGTGGATGATGTCAGCGATACAGGAAAGACGCTGCAGGTTGTTATCGAGGAAGTAAAGAAGAAAGGTGCAAAAGATATCAAGGTGGCATGCTTGGCAATGAAGCCGTGGACTTCAGTTGTGCCTGATTTTTACGTTTTCAGAACAGACAAGTGGAT # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATAAGACTTCAAAAGAATTGAAAG # Alternate repeat : GTTCCAATAAGACTTCAGAAGAATTGAAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: R [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : III-B [Matched known repeat from this family], // Array 3 1145251-1146446 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR778300.1 Thermococcus sp. 2319x1 strain Essen chromosome 1 Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================ ================== 1145251 30 100.0 38 .............................. ACGTTTGCAACCGGTAGAATTATTAGGAACTCAGCCGG 1145319 30 100.0 37 .............................. ACCGTCGTGGTGTAGACGCCTTTTGGCAAGTGCATTA 1145386 30 100.0 38 .............................. CTGTATCGATGTCGTCAAGAGGAGCAAAGAGTGTTGCG 1145454 30 100.0 39 .............................. CAAAGCTCGTGACCGCTGCTGCTGCAAGGAGTGCAATTA 1145523 30 100.0 37 .............................. ATAGGGATTTCTCCGATCCCGGTTCCGTGGAAAAGTT 1145590 30 100.0 41 .............................. CCGTTTGGGTCGGTTGAGGTGTAGAATCGTCTCGTTTTTGC 1145661 30 100.0 38 .............................. ATGCAGCGAACCGCGCGGAAGCGAGTGCGAAGAGGAGG 1145729 30 100.0 38 .............................. ACGGGCTTGTGGAAGTCTACGACGACTTGATTATCTCC 1145797 30 100.0 39 .............................. GAACTTTCTATAATCTTCATACTCTGCACCTCCCTTCTT 1145866 30 100.0 36 .............................. GAACCGGTGCTCCGCTCTGCGGTCAAGGATTGGAAG 1145932 30 100.0 40 .............................. TGACATCGACGTTCAGGTTGAACTTATTAAGAATCTTCTC 1146002 30 96.7 37 .................A............ AAAGGTGAAAGTGGACAGAAACGGGGACGTTTTTGTA 1146069 30 96.7 38 .................A............ CCGAAACCGAAACCGCCGTTTCCACCACCGAGTCCAAA 1146137 30 96.7 39 .................A............ GGAGTCTTGCCGGCCTTGATTTTCCCGGTCTTGCACCAT 1146206 30 96.7 39 .................A............ GAGTTTTTCGTAAAAGATCCAGACAGTTCGAGGACGATG 1146275 30 96.7 44 .................A............ AGAGCTGCGCATACCAGAAAAGCTTTCTGAGTATCTCTTCATCA 1146349 30 96.7 38 .................A............ TCAAAATTTTATTCGCCATCTTCTCCTGAGTGTAGTGC 1146417 30 96.7 0 .................A............ | ========== ====== ====== ====== ============================== ============================================ ================== 18 30 98.7 39 GTTCCAATAAGACTTCAGAAGAATTGAAAG # Left flank : TAACAAGCTTTCTTTTATGTCTTTTGGAATGTTATCACGTTAGAATAGCCTTATTTTCAGTTCTCCCTTGTGTTGGGGAATTAAATTTGAAATCATTCTATAAGGTTGCTCTGGGTGTCTTTAGTAACTGAAGGTTATTATCGGACAAAGAGTTACAAGTTTTTGGGTTTTTGTAACGAAATTTTTTCGGGTTTTTGAGCGAAGGCTTCTCAGGAATTATTTAACGTTCCCTCCTCGCGGAAATTCGACCATTTTTAGTTTAAAGTGTTTTTATTAGTCTATTTTTGATTTTAGCCTTCGTTCTGTCTCTGGAAGTCCCATGAACAAGATTGAACATGGGAGAAAAAGAGTAAGTTCAGGCGAGCGAGTGTTCTGGAGTCTTTTCTGAGGGCCCGGATTCTAGCTTTTTGAGGGGAGTTTTATTGACCCTTTGACGAAAAGCTTATAAGATTCAAACCATTTAATTACTTTGCAAGGAATTTCAAGGAAAATTCACCCCT # Right flank : GATAAAGCAGAGATATTCCAACAAAAATTCAAAAATTGCACTACTTCTGAGCAACTTTGTTGATGAGCCTCAAGATGTAGGTGTTCTCTTCGACGGTTGTTGCTCCCCTGTTTCTCGGGATACCCAGCTCAAGCTCGGCCTTTATTCCATGTTCCTTAAGAAAATCGTGAGCCTTTGCTTTTATGCTCCCATACTCACCCCTTTTTATCAGCCCATAGACCGTTGGTCCCCAGGAGCTCTGGCCGTAGCCGTATGCGTTCTCACTCAGGAATTCCATGATGAGCTTAACATCCTCTCTGAACTCTCCACCCTGATACTCTTCAAAGTGCTTCCCAACCAGTTTTTGGATTTCACTCAAGTGCTTTCCAAAATCTTCGATGTTTCTCTCCTTCAACGCCGGCAGCAATCCCAGAAGAACTCTGTGGGAGATTTTCTCCGCTACGCTGCTTTCCCCTTTCGCGCTCTGCATTATTGGTTTTTCCTCCTCCTCGTCAAAGCCC # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATAAGACTTCAGAAGAATTGAAAG # Alternate repeat : GTTCCAATAAGACTTCAAAAGAATTGAAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 4 1582317-1579449 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR778300.1 Thermococcus sp. 2319x1 strain Essen chromosome 1 Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================= ================== 1582316 29 96.6 42 ...............G............. GGATTCTTCTCGCTATCATCTTCACGGGATCTGGAAGTCCCT 1582245 29 96.6 39 ...............G............. CGCTTAGGTTTAGCCACACCGCAACCCTTTCCACTTTCG 1582177 29 96.6 42 ...............G............. CTATTTGATATCAGTTGCCCAGGAATATTACGGTGATGAAGA 1582106 29 96.6 47 ...............G............. CCGCTCAACCCCGCCCAGAAATTCCCGTGGTTTACTACAAGCACTGG 1582030 29 100.0 42 ............................. TCAATCAACTCCAGCCAGGCCGGAACGTCTATTTTTCCCATG 1581959 29 100.0 37 ............................. ACTTGACTGCCCACAGGTTGCTTCCAGAACAACAGAG 1581893 29 100.0 36 ............................. GAAATTAGTTCTTGATTTTCGGACTCAGGGAATTCT 1581828 29 100.0 39 ............................. AGTCCTCCCACGTGGCTAGCCCAAAGCACAACACCCCGA 1581760 29 100.0 46 ............................. TTATTCATCGCCACCACGCTCCTTTCAACTTCCATAGAATCCTCAT 1581685 29 100.0 39 ............................. TAATATTATAATGAAAACCCTTATGGAGGTGTCGGAGAT 1581617 29 96.6 38 ...............G............. CTTATTGCACCTATATGCTAACTTTTTGACTTATTTCT 1581550 29 96.6 38 ...............G............. CTTATTGCACCTATATGCTAACTTTTTGACTTATTTCT 1581483 29 96.6 38 ...............G............. ACCTCGACACCATGTGGCACCCATATCCTTAATTGTCC 1581416 29 96.6 41 ..........G.................. AAAATTGCCATCTTTGTGTGCTCAATCCGTTCCAACAGCAC 1581346 29 96.6 44 ..........G.................. TAAAGTTCTTCCGCCTCGGTTGTTGCTGCTGAAGGATATGCCGA 1581273 29 96.6 39 ..........G.................. GAAACTAACTGGCCGTCATAGAATTGCTGGACCACGCTG 1581205 29 96.6 37 ..........G.................. CCCGATCCCATCCACGATGAAGTTTCGCCTAAACCTC 1581139 29 100.0 41 ............................. AAGATCTCGAAAGGAATACGCACTGACTTTCCGTTTTCGAG 1581069 29 96.6 39 ..........G.................. GTACTTCCAAGAATTCTTGGAGATTGTTTCTGATTATAC 1581001 29 96.6 42 ...............G............. TCGCTGAACACCTCCTTGATGTATTGCTCCACAACCCGCCTT 1580930 29 96.6 42 ...............G............. AGGATTACGTCGTCGTCCGGGTTCAGACCCCATTCCTCCAAT 1580859 29 100.0 42 ............................. ATTCTCTGGATGAATTTTGGTTTTATCTCGGGATAGTAGAGA 1580788 29 96.6 38 ..........G.................. CGGCGCAGCTCGGGAAGAGCATCCCGGGCGTTTCCACG 1580721 29 100.0 38 ............................. GTTATTCCCGCCAACACCCTCGAGACAATATTATTCCA 1580654 29 100.0 39 ............................. TCCCTCAAGCCCACCGCCGCCTTGTACACTTCCAGGACT 1580586 29 100.0 42 ............................. GACTCTGGAAACTCTGCAATGTATTCCCTCTTTAGGGCGCCC 1580515 29 100.0 38 ............................. TACATGTCTTTGATGATTTCGCAGAGTAAATCAATCGC 1580448 29 93.1 40 ..........G..........A....... TTGTAGTAGTCTAGGTAATCTATGTATCTGCTGTTTGCCC 1580379 29 96.6 40 ...............G............. CGGAGGTCTACAAGAGGTCTGATAACTCCTGCTCGACTTA 1580310 29 100.0 42 ............................. TCGTCCATGACCTCTACTGAATTTACTGCCTTATTCAACCAA 1580239 29 96.6 45 ..........G.................. TATACTCGTGGTCCCACCTGTCGCCGTTCTTGTCAACTATAACAA 1580165 29 96.6 42 ..........G.................. CCTATCCTCGAACCGTTCCTAAGCTGAGTGAGTAGGATAGTG 1580094 29 96.6 43 ..........G.................. ATCATAAATTCTTCTGTCAACCAGTCCTCTGTCTCAAAGCCAC 1580022 29 100.0 28 ............................. CCGCACATACACCGCATACCTATACCGT Deletion [1579966] 1579965 29 100.0 41 ............................. TGTAATTGCTGTCTAAAGCCGAAATAGGGCTTCTTATCTAA 1579895 29 96.6 40 ..........G.................. ACGGTAGTTCTTCATTAAGTTGGCTTAACTGTTCAATTAC 1579826 29 100.0 40 ............................. AACCCCAAAAACTCCAAAGTCCGTTCATTCATCTTATATA 1579757 29 96.6 49 ...............G............. TCGTCCCCTACCTCTCTCCATAGGTAAATCGTGTCGGTCTCTGTCTTTC 1579679 29 96.6 41 ..........G.................. ACTATTTGTTGCCTGAAACCAAAGTAAGGCCGTTTCTCCAA 1579609 29 96.6 37 ..........G.................. CGGCTATGAGCAGGAAGCTAATTGAGAAACACATAGA 1579543 29 100.0 37 ............................. AATATCTTCTCCCCCGCGTATGCCTGATAATAAGCAA 1579477 29 82.8 0 ......................C..TGGT | ========== ====== ====== ====== ============================= ================================================= ================== 42 29 97.6 40 GTTTCCGTAGAACGTAGTCGTGTGGAAAG # Left flank : GTGCTACCGGGGGAGGGGAAGGGCTTTACCGCTTTTCCCAACTGCCGGTACGAACCTGTTCGTCTTGGGATTCGATGGAGAATGCTTCTGGAGTAGTTTAACATGTAAAGCTTCCCGGAAAGCGATTTTTGATTTCTGTTTACCTGTCCGGTGGTAATCCCATACCAGATGTATCCATTTTAAATACAACGTCTGAAACAGCCCAAAACCGGTGGCGGTGGAATTTGAGAGGAGATTGAAAGGTTGAGATCCCGTAAAAATGCCATGATTAATTTTTTACTGGTTTTTGACAATTTAAATCGGTTTAAACGGTTTTCGATCGTTTGGAATAATATGTTGAGCTGTTTCAGTGCACCGATAGGATAGAGGAGACTTTCAACAGCTCCTTGCTTTTCGGGTTGGGTTTATAAATGGGCTGCAGTGCCACGGGTTTTCGGGGCAAGGTTTAAATAGGAGTTCTTATGTTATTCCATTTAGGCATCCGGGGAAAAAAGTCGAGG # Right flank : GATATGAAGAGGCCCGTCTACATAACCCAGATTGGCATGCTCGAGAGGAGGGGCAACACCCTCTTCTTCGAGAATGAAAATGGGAAGAAAGCCATCCCCGTTAATTCAACGAGTGAAGTACACTGCTTTAAACCCGTGACGCTGACGAGCGGCGCGATAAAGCTCCTCTCCGAGAAGAACGTTCCCGTCCACTTCTACAACAAGTACGGCTACTATCGGGGCTCCTACATGCCCGCTGAAGGGCAGGTCAGCGGGAGCGTGATAATAAGGCAGGCGGAGCACTACCTTGACGGAGAAAAGCGCCTCCACATCGCGAAACAGCTCGTTGAGGGCATAAAGGCCTCAATGCTGGCACTCCTTAAGTCCTACCGCGCTGATGCTTCTCCAATAGAATGCATCCCCGTTGACGGAGAAAGTCCAGCAGAGCTCATGGGCGTTGAAAGCACCCTCTGGAAGGAGTTCTACGGAATCTTCGGCTCCCTTCTGAAGAACTTCGAATT # Questionable array : NO Score: 5.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCGTAGAACGTAGTCGTGTGGAAAG # Alternate repeat : GTTTCCGTAGGACGTAGTCGTGTGGAAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.20,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 5 1703650-1704442 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR778300.1 Thermococcus sp. 2319x1 strain Essen chromosome 1 Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 1703650 30 100.0 41 .............................. CTCACCCCTCCCGAGGCACCACCTAGCCACACCCCCTGTAA 1703721 30 100.0 41 .............................. GGTGCTCTTTGGCCTCATCTAGGGGCATTCCTCCCCAGAAC 1703792 30 100.0 38 .............................. TGTGTGGCCACACCGGAGGAGGGCAGGAGATGGCTAGA 1703860 30 100.0 38 .............................. TATCCACCCCGGCCTTTTTCAGCATAAAAGATAAGAAC 1703928 30 100.0 41 .............................. GATGCATGTCCGAAGTGCGGTAACAAGAAAATGAAGCTCCA 1703999 30 100.0 38 .............................. CGTGTTTAATATCTCACTATACCTTGCGCCCTCTTCCC 1704067 30 100.0 39 .............................. AACATGTGGGAAAACTTGTTGAGATAAAGGGGCTAATTT 1704136 30 100.0 38 .............................. CTTAATCAATGCATAAAGCGTAACTATCGCTTTTTTAA 1704204 30 100.0 39 .............................. CAGATTAACAAACGACCAGGTCGAGACCGCACTGAAGAG 1704273 30 100.0 39 .............................. TCTCTTGGTTTAATAACTTCATAAAAGTGTAGAATTCTG 1704342 30 96.7 41 ....................A......... CATAAAACCTTGCATCTTCGTCACCCTCAAGATATTCGTAC 1704413 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================= ================== 12 30 99.7 39 GTTCCAATAAGACTTCAAAAGAATTGAAAG # Left flank : TATAAAACAGAATAATCTTCGAATATCATTCTATCACGATGTAAACTGATATTTTTGAATTTTTCAGCTTTTTCCGTTCGTATTTTGATTTTTAGCCTCTAAGGTTGCTCTGGATGTTTTTAGTAACTGAAGGTTATTATCGGACAAGGAGTTATGATATTTTGAGGTTTTTGTAACGAAATTTTTTCGGGTTTTTGAGCGAAGGCTTCTCAGGAATTCTTTAACGTTCTCTCCTCGCGGAAATTCGACCATTTTTAGTTTAAAGTGTTTTTATTAGCCTATTTTTGATTTTAGCCTTCGTTCTGTCTCTGGAAGTCTCGTGAACAAGACTGAACATGGGAGAAAAAGAGTAAGTTCAGGCGAGCGAGTGTTTTAGAGTCTTTTCTGAGGGCCTGGATTCGAGCCTTTTGAGGGGAGTTTTATTGACCCTTTGACGAAAAGCTTATAAGATTCAAGCCATCTAATTGCTTTGCAAGGAATTTCAAGGAAAATTCACCCCT # Right flank : GCTCTTTAATGAACAACACTTTTAAACCCTCTCCAAATATCTCTTTTGATGATAGCGTTAGGGATAGAGGGAACGGCACATACACTTGGCATAGGGATTGTGACGGAAGATAAAGTTCTCGCCAACGTATTTGACACTCTCACAACCGAAAAAGGTGGCATACACCCGAAGGAAGCCGCTGAACACCATGCAAAACTCTTAAGACCCCTTCTAAAAAAAGCCCTCAAAGAGGCTAAGATTAGCATAGGGGATGTAGATTTAATTGCTTTCTCCCAGGGGCCGGGTTTAGGGCCGGCTTTGAGGGTTGTGGCAACTGCCGCAAGGGCCTTAGCTATAGGATACAACAAACCAATTGTTGGAGTCAATCACTGCATCGCCCACGTGGAAATTACAAAGATGTTTGGAGTAAAAGACCCGGTTGGTCTTTACGTAAGCGGGGGCAACACTCAAGTGCTGGCTTTGGAGGGCGGGAGATACAGGGTTTTTGGAGAAACCCTCGA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATAAGACTTCAAAAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: F [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : III-B [Matched known repeat from this family], // Array 6 1920617-1920841 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR778300.1 Thermococcus sp. 2319x1 strain Essen chromosome 1 Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ============================================= ================== 1920617 25 100.0 36 ......................... GAAAGATTGTGGACTGTTGACTGTTGGGAATATAGG 1920678 25 100.0 45 ......................... GAAAGCCCTACAGTTTTTTCATTATTATATTAGCTTTTTGATTAT 1920748 25 100.0 44 ......................... GAAAGATTTGGGCAAAGTAGGAAGCCAAAAAGTAGGCCGTGGAG 1920817 25 100.0 0 ......................... | ========== ====== ====== ====== ========================= ============================================= ================== 4 25 100.0 42 GTTCCAATAAGACTTCAAAAGAATT # Left flank : TGGGGCTAAGGAGTGAAGCGAGGTTTTCCCGGCTCTCGTTGTGGATCCTGATTTTCCAATTTTTCTCATTTCAGTGGCCTTGTTTTCAAATCAAACTTCCCACAACGTTCTGGAAGTCTTTAGTAACTGAAGGTTATTATCGGACAAAGAGTTATGATATTTTGAGGTTTTTGTAACGAAATTTTTTCGGGTTTTTGAGCGAAGGCTTCTCAGGAATTCTTTAACGTTCTCTCCTCGCGGAAATTCGACCATTTTTAATTTAAAGTGTTTTTATTAGCCTATTTTTGATTTTAGCCTTTGTTCTGTCTCTGGAAGTCCCATGAAAAAGACTGGACATGGGAGAAAAAGAGTAAGTTCAGGCGAGTGAGTGTTTTAGAGTCTTTCTTAATGGCCCGGATTCGAGCCTTTTGAGGGGAGTTTTATCAACCCTTTGACGAAAAGCTTATAAGATTCAAGCCATCTAATTACTCTGTAAGGAATTTCAAGGAAAATTCGCCCCT # Right flank : TATAAAGAGCCAAAGCTAAGTTAGGATATCGCCAAGTCTATCTTCTTCGATTGCCTGCCTTATCTCTCTGGCAATTCTCCTTCCAGTGCTCATTGGCTCGTTGTATCTGAGCCATGTGTACGGGGAGCCGTTTATGAAGGGATTCGTTCCGGCAACGATTCTCGCTGAGATCTCAAAGACCACGAATTCCATGTCCTCCGTGATAACTCCCTCAAGGCAGAAAGGCCCCCAAAGTCCCCCCATAAGCTTTTCTGACGCTTTTACCACCCTCTCTCCAGCCTCGATTATATCCATGAGCAGGCTTTCTCTGAGCACTATTGGAATGTTCCCCACAACTGTGTAGCTCGTCTCCACCCCGATTTCAAGCTGCTGCTCTGCGCTTATCCTTCCTATCGCATCTGCGTTGCTTTCGTATCTCTTATCTATACTCATGAGCTCAAGCTCTTTGTTGAGCTTCGAGTAGAAGAAGTGCGGGTAAACGGGAACGCCTATGACGTATT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATAAGACTTCAAAAGAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //