Array 1 4911-5365 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADCOG010000103.1 Klebsiella pneumoniae strain KCJ3K669 NODE_103_length_20529_cov_5.005735, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4911 28 100.0 33 ............................ CGATTTACCTCTTCCACCCGCTTGGCGGGAAAA 4972 28 100.0 33 ............................ TGGTCATCGCGCCCCTTGGCCTGCTCTGCGCTG 5033 28 100.0 33 ............................ TGCGCGATATCCGCGCCGCGTTAGCGATGTGGT 5094 28 100.0 33 ............................ TTGTCTGGGACAGCAAAGGACGCCGTAACGAGG 5155 28 100.0 33 ............................ TCCTTCATTAAGTGAGCAATTGCTTCCTTTTTT 5216 28 100.0 33 ............................ CCTGCAGCTGGTCGTCGAGCTGACGGATGCCGG 5277 28 96.4 33 ..............T............. TTCATCACGTGTGAGCGGATTTGGCTCTATCCT 5338 28 92.9 0 ...................A.......T | ========== ====== ====== ====== ============================ ================================= ================== 8 28 98.7 33 GTCTTCCCCACATGCGTGGGGGTGTTTC # Left flank : TTAGCGTTGGCGAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGACTCGACGGCGCAGCGCAGGATAACAGCCTCCAGCTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGCGGTAACTTCGCGAAGCCACGGAAGGCAAGCGCCAGGATGACGCGCTACGTTCTGGGGATGACAAAAGCGTTTTACCCCCGGCTGCGGGCCGGGCAGGCCAGTAGGGTAGACCGGTCCAGGTCAGCAGCAAATCGACGGTGGTGATATGGGGACATACTTTTTCGTTTGATGAATGTTGATGCTGATGCGGAAACCCTGCGGAGCGCAATTGTTGTAAATCTGGCGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : TCGCCTTTCAAGTGTCGACAAGTCACGTCTGTGCGCATTTCTCAGATGAAAGGGGATTCCTGACGTAGAGGCATCAATGCCGTGACATAGTTATCCTTAATGTACATCAATGTCTTCGAAATTTCGTTTGGCCAGCACAGTCTCATATGTTTTTTGTATGATTTTACTTATAAATATTCGTGAACTATGTTTGTCCTATACTTTCTTTAGGGGCATCTAAATCATTCGAGTTTATTACTCGTCTGGAGATATTGTTCTTCATATTAATTATTTATAGCTTTTTATATTATTATTTTTGGCTTTTATCTTTAATTCAGTGTGTTGTGGATGTTTTTGATTTTATAAAAAGTTATTTATAAGTTTCCCGGTTTTTAGTATTAATAAAGGGCACATGTTTTTTAAGGAAAAATTCCATGAGGCGCTTGATCAGGGTTTCGCTACAAAATCAACATGCCATCGCGGCGATAAGTTTTGAAAACTGTCCAGCGAAAACCCGGATG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACATGCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 14119-15488 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADCOG010000103.1 Klebsiella pneumoniae strain KCJ3K669 NODE_103_length_20529_cov_5.005735, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 14119 28 100.0 33 ............................ TACGTCGAAAACGAGCGTAAAACAGGTTTCATC 14180 28 100.0 33 ............................ TAGATGGATTCCTGGGTATCCCCCCAAAACAAA 14241 28 100.0 33 ............................ CTTTCTCGACGGACGATCCCGTTTACCTCGTTG 14302 28 100.0 33 ............................ TGACGCTATTTTTTGCCAGGACAACGGCTATGA 14363 28 100.0 33 ............................ TTACGTGATCGATAGCGGGCTGTCATATAGCGA 14424 28 100.0 33 ............................ TCTTTATGTCCGCTTGCGAGGCGATCAGGGTCA 14485 28 100.0 33 ............................ CTCCTGGTTCTGGAGATTTCGACACTTTCAGGC 14546 28 100.0 33 ............................ TGTTGTTTATGTGCGCCCCTTTACGGCGGAAAC 14607 28 100.0 33 ............................ TCGAGTTGCCAGCGCGCCACGCTGATCCGCAGG 14668 28 100.0 33 ............................ TCGTGGATCATTTTGACTCCTTAACTTCACGTA 14729 28 100.0 33 ............................ TGGCATCCGTGTAACGGGAAGCGGCCTTGCGGA 14790 28 100.0 33 ............................ CACCCTGCGTCGCTGGTACTGCCGCACGCAAAA 14851 28 100.0 33 ............................ CGGTACTATTTCGAAAGTTTCGACGCCGGATTT 14912 28 100.0 33 ............................ TAGCAGTGGGCTCCGTTGCTCTTCCCCGGTCGG 14973 28 100.0 33 ............................ TCGCGTTTTATGTGGTTGTCGCTGTACCAGCGC 15034 28 96.4 33 ...................A........ TACCGTGAGGTCTCCAGAGCGGGCGAAATCCTC 15095 28 100.0 33 ............................ CCCTGCTGAGCCCACTCGCACACCAACACCGAA 15156 28 100.0 33 ............................ CAAAAAGCGATTTTTTCGCAGCAGGGTCTTGCA 15217 28 100.0 33 ............................ TCGCCAGCGGCTGCACAAGTCTGACCAAAATCC 15278 28 100.0 33 ............................ CCCAAACCCGCAGCGCGCACAAAAGCTCGTTTA 15339 28 100.0 33 ............................ CAGCTCGCTGTTCGGGTTTGACTGACTGATCGC 15400 28 100.0 33 ............................ CAACAACACGGCATCCCGCGACCTGCTGAATTT 15461 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 23 28 99.8 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAAGAACGGCTCTGTATTGATTTGGCATTTTCACTCTCGAGGGAAATGGCGGGCCGCTACGATAAACACAAAGTCTCTGAGGCATTCAGAAAGCGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTCCGTGGACGAATGAAGCTGTGGTTTGTCGAACCACGGCCAAATTTTTTTGTCTCAGGCGTCAAAGATTCGGTCGCACAAACCGTTGTTGATTACCTGTTGCAGTACACGCCTGTGGAATCAGGCCTGTTGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGATATTAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAACTCTCGCTCTTTCACAATATGTTGGT # Right flank : CTTATGAGGGGTCTACCAGCATTGGCGTACTGGAGTCTTCCCTACACATGTGGGACTTAGCAATAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTTAAAATAATTTTTAGCTAATGAAACTGTCGTTTGGGAGAGGTAGGAATATTTTATTGCGAAAGAGAAGGGAACTGTTTAAAGCAATAACGGCGAATGATTCTTATAAAATGAAGGATAGGGAATTCATATGTTTCGACTTTACCAGTCACATGATTTAATACGCCAATTAAATCCTGAAGACTTTCAATATATTTTGACACCAGCAGGTTCGCTAAGAGAAGCGTGTATACATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCATTTGGCCTACCGAAGGAAATATACAACTCATCTCCACATAAAAGGCCCTATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTATGATGAGGTAGAGCACAGGCTACAAATTGGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //